Wall clock time and date at job start Tue Mar 31 2020 16:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 120.00337 * 2 1 4 4 H 1.48506 * 109.47536 * 239.99993 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47165 * 119.99723 * 3 2 1 7 7 C 1.38805 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00110 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00445 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00064 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99851 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.46587 * 175.11207 * 14 13 11 16 16 N 1.46895 * 109.54151 * 54.94931 * 15 14 13 17 17 C 1.46898 * 111.00150 * 58.04855 * 16 15 14 18 18 C 1.52998 * 109.47095 * 182.60871 * 17 16 15 19 19 C 1.53003 * 109.47376 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47192 * 180.02562 * 19 18 17 21 21 C 1.53182 * 109.53852 * 175.12096 * 15 14 13 22 22 C 1.53282 * 109.06155 * 176.85158 * 21 15 14 23 23 O 1.42896 * 109.46235 * 302.44976 * 22 21 15 24 24 C 1.42903 * 114.10163 * 61.15503 * 23 22 21 25 25 C 1.53086 * 109.41682 * 298.84435 * 24 23 22 26 26 H 0.97003 * 120.00036 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47304 * 59.99414 * 10 9 7 28 28 H 1.09007 * 109.47118 * 299.99653 * 10 9 7 29 29 H 0.96998 * 119.99885 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47018 * 55.12041 * 14 13 11 31 31 H 1.08994 * 109.47766 * 295.11516 * 14 13 11 32 32 H 1.00897 * 110.99638 * 182.00604 * 16 15 14 33 33 H 1.09001 * 109.47333 * 302.60771 * 17 16 15 34 34 H 1.09006 * 109.47038 * 62.61497 * 17 16 15 35 35 H 1.09002 * 109.47576 * 300.00556 * 18 17 16 36 36 H 1.09005 * 109.47367 * 60.00142 * 18 17 16 37 37 H 1.09002 * 109.46811 * 300.00379 * 19 18 17 38 38 H 1.08993 * 109.46954 * 60.00167 * 19 18 17 39 39 H 0.96697 * 113.99883 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.52798 * 296.84725 * 21 15 14 41 41 H 1.09004 * 109.52084 * 57.03916 * 21 15 14 42 42 H 1.09001 * 109.46054 * 182.44562 * 22 21 15 43 43 H 1.09006 * 109.46360 * 62.44974 * 22 21 15 44 44 H 1.08999 * 109.48426 * 178.85871 * 24 23 22 45 45 H 1.09010 * 109.48799 * 58.83159 * 24 23 22 46 46 H 1.09006 * 109.51971 * 297.69986 * 25 24 23 47 47 H 1.08997 * 109.57905 * 177.54536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3432 0.0022 14 6 2.3301 -7.7151 0.0024 15 6 3.4974 -8.6968 -0.1200 16 7 4.4724 -8.4363 0.9474 17 6 3.8473 -8.5531 2.2716 18 6 4.8749 -8.2121 3.3525 19 6 4.2240 -8.3344 4.7318 20 8 5.1837 -8.0153 5.7414 21 6 2.9750 -10.1316 0.0022 22 6 4.1397 -11.1073 -0.2003 23 8 4.7421 -10.8717 -1.4745 24 6 5.2889 -9.5604 -1.6279 25 6 4.1722 -8.5232 -1.4841 26 1 -0.4850 0.8401 -0.0004 27 1 3.1237 -3.7310 0.8924 28 1 3.1250 -3.7319 -0.8875 29 1 3.8007 -6.1836 0.0025 30 1 1.6526 -7.8494 -0.8409 31 1 1.7939 -7.9023 0.9327 32 1 5.2685 -9.0511 0.8678 33 1 3.0066 -7.8626 2.3387 34 1 3.4921 -9.5734 2.4169 35 1 5.7157 -8.9026 3.2854 36 1 5.2302 -7.1919 3.2073 37 1 3.3831 -7.6442 4.7992 38 1 3.8691 -9.3547 4.8769 39 1 4.8396 -8.0725 6.6433 40 1 2.5417 -10.2786 0.9915 41 1 2.2154 -10.3088 -0.7592 42 1 3.7675 -12.1310 -0.1579 43 1 4.8803 -10.9570 0.5853 44 1 5.7446 -9.4696 -2.6139 45 1 6.0447 -9.3895 -0.8611 46 1 3.4366 -8.6680 -2.2754 47 1 4.5933 -7.5206 -1.5572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271023131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:26 Heat of formation + Delta-G solvation = -169.066400 kcal Electronic energy + Delta-G solvation = -27044.069385 eV Core-core repulsion = 23158.465722 eV Total energy + Delta-G solvation = -3885.603663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59007 -40.24413 -38.27228 -37.49831 -35.34058 -34.58095 -33.89931 -32.12401 -31.18444 -30.67049 -28.08478 -27.52881 -25.71684 -24.57419 -23.64150 -22.27159 -21.63446 -20.21201 -19.69195 -18.41331 -17.93467 -17.43309 -17.36916 -16.99722 -16.87468 -16.82272 -16.55236 -16.14635 -16.01805 -15.66621 -15.48956 -15.11254 -14.69129 -14.57565 -14.41635 -14.22121 -13.89970 -13.44683 -13.25891 -13.18510 -13.16232 -13.00841 -12.86055 -12.63728 -12.57443 -12.24387 -12.07813 -12.05236 -11.75370 -11.68725 -11.29569 -11.12593 -10.95634 -10.89913 -10.48028 -10.27595 -10.05122 -9.47912 -8.65924 -8.34210 -6.12134 1.27626 1.44088 1.47108 1.57334 1.64532 2.26676 2.31539 2.84236 2.95484 2.99738 3.33424 3.46958 3.58103 3.62302 3.78195 3.96013 3.98134 4.06438 4.19391 4.23092 4.28530 4.30942 4.39524 4.43375 4.51689 4.52734 4.54870 4.60439 4.64583 4.67570 4.76935 4.80998 4.85829 5.03568 5.08694 5.14838 5.23043 5.26730 5.41876 5.45563 5.92655 6.20006 6.24183 6.34339 6.57804 6.86168 7.06941 7.28829 8.74781 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002777 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.002283 B =10081.061790 C =11495.202336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.128 4.128 11 C 0.532 3.468 12 O -0.570 6.570 13 N -0.697 5.697 14 C 0.136 3.864 15 C 0.117 3.883 16 N -0.675 5.675 17 C 0.060 3.940 18 C -0.111 4.111 19 C 0.074 3.926 20 O -0.596 6.596 21 C -0.181 4.181 22 C 0.062 3.938 23 O -0.399 6.399 24 C 0.059 3.941 25 C -0.141 4.141 26 H 0.271 0.729 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.418 0.582 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.351 0.649 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.332 -24.913 4.136 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.279 4.279 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.351 5.351 14 C 0.011 3.989 15 C 0.025 3.975 16 N -0.309 5.309 17 C -0.069 4.069 18 C -0.149 4.149 19 C -0.004 4.004 20 O -0.405 6.405 21 C -0.221 4.221 22 C -0.014 4.014 23 O -0.319 6.319 24 C -0.017 4.017 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.256 0.744 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.534 -24.546 3.443 27.776 hybrid contribution 1.090 0.650 0.776 1.487 sum 13.624 -23.897 4.219 27.829 Atomic orbital electron populations 1.70176 1.07957 1.28668 1.47965 1.26120 0.95962 1.03282 0.93707 0.85014 0.77825 0.75718 0.79509 1.18638 1.20339 1.18692 1.23183 0.95340 0.92120 1.58974 0.90023 1.85523 1.10500 0.99093 1.97037 1.23345 1.03467 0.94618 1.06489 1.20031 0.86200 0.86668 0.75298 1.90683 1.17410 1.86126 1.50645 1.45566 1.10365 1.04434 1.74718 1.21391 0.95588 0.80403 1.01472 1.21025 0.91293 0.92636 0.92534 1.60486 1.09395 1.59690 1.01310 1.21859 0.96857 1.00373 0.87774 1.21362 0.98659 1.02806 0.92104 1.22152 0.90712 0.99560 0.87988 1.86413 1.41360 1.93006 1.19711 1.22846 1.00134 0.95004 1.04087 1.22662 0.93617 0.99788 0.85359 1.87950 1.76280 1.32264 1.35362 1.22700 0.94380 0.81215 1.03407 1.22227 0.99386 1.01219 0.95122 0.91983 0.87661 0.87472 0.74438 0.92181 0.92311 0.82737 0.91847 0.93017 0.90923 0.92095 0.93956 0.92040 0.75311 0.89369 0.90570 0.87570 0.92230 0.87789 0.91524 0.91060 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.67 9.50 67.96 0.65 -31.03 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 11 C 0.53 19.84 7.85 87.65 0.69 20.53 16 12 O -0.57 -26.53 15.86 -3.02 -0.05 -26.58 16 13 N -0.70 -17.82 5.12 -463.05 -2.37 -20.19 16 14 C 0.14 2.97 3.99 86.38 0.34 3.31 16 15 C 0.12 1.66 0.35 3.65 0.00 1.66 16 16 N -0.67 -8.38 5.39 -469.57 -2.53 -10.91 16 17 C 0.06 0.80 4.91 86.30 0.42 1.23 16 18 C -0.11 -1.63 5.87 30.59 0.18 -1.45 16 19 C 0.07 1.06 7.05 71.98 0.51 1.57 16 20 O -0.60 -9.94 13.66 -148.98 -2.04 -11.97 16 21 C -0.18 -2.17 4.71 30.75 0.14 -2.03 16 22 C 0.06 0.66 6.58 72.08 0.47 1.13 16 23 O -0.40 -5.98 10.77 -148.98 -1.60 -7.58 16 24 C 0.06 0.70 6.58 72.01 0.47 1.17 16 25 C -0.14 -1.97 4.96 30.68 0.15 -1.82 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.42 8.79 7.44 -92.71 -0.69 8.10 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.38 6.61 -2.39 -0.02 1.36 16 32 H 0.35 3.47 5.46 -89.70 -0.49 2.98 16 33 H 0.06 1.15 6.24 -2.39 -0.01 1.13 16 34 H 0.05 0.53 6.43 -2.38 -0.02 0.52 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.40 3.12 9.12 -74.06 -0.68 2.45 16 40 H 0.09 0.93 6.37 -2.39 -0.02 0.91 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.48 6.87 -2.38 -0.02 0.47 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 45 H 0.07 0.62 6.77 -2.38 -0.02 0.61 16 46 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.09 1.22 7.40 -2.39 -0.02 1.20 16 Total: -1.00 -78.75 383.83 -3.35 -82.10 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.85 Total: 23.97 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 4.94 Total: -9.18 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.61 Total: -87.18 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -3.69 Total: -46.14 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -78.75 -3.35 -82.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271023131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.966 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds