Wall clock time and date at job start Tue Mar 31 2020 16:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00546 * 2 1 4 4 H 1.48501 * 109.47177 * 240.00047 * 3 2 1 5 5 H 1.48502 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47676 * 120.00062 * 3 2 1 7 7 C 1.37887 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.46981 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.46928 * 124.37602 * 270.00030 * 11 10 9 13 13 C 1.54807 * 105.54165 * 196.72038 * 12 11 10 14 14 C 1.53208 * 101.38851 * 335.83154 * 13 12 11 15 15 C 1.53706 * 111.54674 * 145.81295 * 14 13 12 16 16 C 1.54603 * 102.86616 * 153.75357 * 15 14 13 17 17 N 1.47132 * 107.32187 * 339.50680 * 16 15 14 18 18 C 1.34777 * 125.60605 * 178.91091 * 17 16 15 19 19 O 1.21613 * 119.99966 * 179.69292 * 18 17 16 20 20 C 1.47411 * 120.00082 * 359.96696 * 18 17 16 21 21 N 1.31615 * 125.86209 * 359.74953 * 20 18 17 22 22 C 1.33103 * 109.09412 * 179.97438 * 21 20 18 23 23 C 1.35564 * 108.34958 * 0.02562 * 22 21 20 24 24 N 1.35401 * 107.16125 * 359.77432 * 23 22 21 25 25 H 0.96999 * 126.44087 * 180.22597 * 24 23 22 26 26 C 1.47709 * 108.78854 * 358.64527 * 17 16 15 27 27 C 1.34891 * 124.38204 * 89.96930 * 11 10 9 28 28 O 1.21280 * 125.21758 * 358.76337 * 27 11 10 29 29 H 0.97008 * 119.99127 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47285 * 59.99783 * 9 7 2 31 31 H 1.08997 * 109.46924 * 300.00100 * 9 7 2 32 32 H 1.08998 * 109.47367 * 59.99737 * 10 9 7 33 33 H 1.09001 * 109.47067 * 299.99342 * 10 9 7 34 34 H 1.08999 * 110.23159 * 315.73536 * 12 11 10 35 35 H 1.08993 * 110.23494 * 77.61387 * 12 11 10 36 36 H 1.09002 * 111.03606 * 217.80646 * 13 12 11 37 37 H 1.08999 * 111.04020 * 93.86326 * 13 12 11 38 38 H 1.08992 * 110.75252 * 272.30245 * 15 14 13 39 39 H 1.08999 * 110.74961 * 35.47850 * 15 14 13 40 40 H 1.08997 * 109.99385 * 220.00450 * 16 15 14 41 41 H 1.08996 * 109.75113 * 98.87398 * 16 15 14 42 42 H 1.07993 * 125.82527 * 180.02562 * 22 21 20 43 43 H 1.07999 * 126.41846 * 180.02562 * 23 22 21 44 44 H 1.08990 * 110.39346 * 141.68415 * 26 17 16 45 45 H 1.09008 * 110.38942 * 263.95761 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0018 11 7 1.5125 -4.9309 0.0012 12 6 1.0963 -5.6491 1.2135 13 6 0.7618 -7.0875 0.7492 14 6 0.4341 -6.8594 -0.7299 15 6 0.8753 -8.0501 -1.5960 16 6 -0.0861 -7.9719 -2.8042 17 7 -1.2525 -7.1790 -2.3853 18 6 -2.3079 -6.8649 -3.1625 19 8 -3.2230 -6.2055 -2.7078 20 6 -2.3557 -7.3256 -4.5620 21 7 -1.4341 -8.0422 -5.1698 22 6 -1.8165 -8.2697 -6.4242 23 6 -3.0202 -7.6769 -6.6176 24 7 -3.3667 -7.0859 -5.4498 25 1 -4.1791 -6.5850 -5.2763 26 6 -1.0798 -6.7893 -0.9711 27 6 1.1323 -5.5904 -1.1124 28 8 1.3258 -5.2136 -2.2488 29 1 -0.4849 0.8402 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8710 -3.6041 0.8922 33 1 2.8723 -3.6049 -0.8878 34 1 1.9095 -5.6667 1.9391 35 1 0.2149 -5.1771 1.6475 36 1 -0.1019 -7.4808 1.2853 37 1 1.6234 -7.7455 0.8623 38 1 1.9109 -7.9330 -1.9149 39 1 0.7421 -8.9890 -1.0585 40 1 -0.4035 -8.9738 -3.0934 41 1 0.4130 -7.4834 -3.6410 42 1 -1.2624 -8.8308 -7.1620 43 1 -3.5968 -7.6795 -7.5308 44 1 -1.4435 -5.7746 -0.8096 45 1 -1.6029 -7.4879 -0.3180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271287484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:34 Heat of formation + Delta-G solvation = 1.697831 kcal Electronic energy + Delta-G solvation = -28919.853049 eV Core-core repulsion = 24938.503079 eV Total energy + Delta-G solvation = -3981.349970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.39709 -41.05769 -39.07860 -36.98179 -36.00216 -33.94209 -32.97957 -32.36940 -30.66358 -30.00179 -29.00980 -27.97945 -25.58511 -24.83043 -23.08052 -22.44832 -21.90106 -21.67618 -20.41136 -20.22637 -18.74464 -18.09868 -16.79275 -16.58033 -16.32678 -15.94651 -15.54958 -15.31157 -15.03878 -14.75518 -14.40125 -14.21245 -13.99069 -13.92859 -13.68747 -13.17060 -13.10712 -12.81834 -12.67254 -12.64724 -12.33602 -12.24190 -11.87701 -11.42860 -11.31008 -11.04399 -10.90233 -10.88393 -10.68186 -10.46924 -10.37023 -10.29784 -9.97549 -9.83811 -9.33765 -9.08151 -8.90467 -8.61075 -8.35160 -8.00620 -5.99890 -4.03861 1.21768 2.32320 2.45584 2.94297 3.23772 3.31858 3.34065 3.38328 3.40169 3.53441 4.05060 4.22565 4.36712 4.45904 4.47370 4.70725 4.80545 4.95742 5.00137 5.14555 5.19358 5.27358 5.35880 5.41036 5.50150 5.62183 5.67060 5.69620 5.76470 5.81073 5.88525 5.98980 6.05919 6.11741 6.21574 6.39085 6.46301 6.82152 6.89585 7.00637 7.32352 7.50802 7.56501 7.68082 7.86015 7.99503 8.00695 8.35270 8.67285 9.02738 9.60026 11.11358 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003212 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.872987 B = 8715.769698 C =10024.164556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.012 3.988 10 C 0.129 3.871 11 N -0.612 5.612 12 C 0.100 3.900 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.116 3.884 17 N -0.588 5.588 18 C 0.620 3.380 19 O -0.542 6.542 20 C 0.154 3.846 21 N -0.437 5.437 22 C -0.031 4.031 23 C -0.026 4.026 24 N -0.525 5.525 25 H 0.430 0.570 26 C 0.135 3.865 27 C 0.527 3.473 28 O -0.517 6.517 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.087 0.913 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 -22.969 -5.260 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.154 4.154 14 C -0.119 4.119 15 C -0.147 4.147 16 C -0.006 4.006 17 N -0.320 5.320 18 C 0.406 3.594 19 O -0.419 6.419 20 C -0.107 4.107 21 N -0.159 5.159 22 C -0.184 4.184 23 C -0.165 4.165 24 N -0.127 5.127 25 H 0.270 0.730 26 C 0.013 3.987 27 C 0.313 3.687 28 O -0.393 6.393 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.195 0.805 43 H 0.203 0.797 44 H 0.106 0.894 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.731 -22.442 -5.241 23.346 hybrid contribution -0.726 1.602 -0.424 1.809 sum -4.457 -20.840 -5.666 22.052 Atomic orbital electron populations 1.69974 1.06106 1.26796 1.50141 1.25011 0.94848 0.99308 0.95109 0.86611 0.79539 0.82937 0.78636 1.20157 1.21260 1.20180 1.21043 0.92968 0.90710 1.51548 0.92539 1.19397 0.94424 0.91066 0.97709 1.21800 0.94973 0.80955 1.01340 1.48682 1.56288 1.23562 1.06027 1.22132 1.00932 0.91005 0.88321 1.22475 1.03117 0.97137 0.92703 1.21606 0.96224 0.96495 0.97592 1.22463 1.00427 0.96471 0.95330 1.22180 0.85071 0.95826 0.97540 1.47961 1.19704 1.52441 1.11927 1.15977 0.81879 0.79596 0.81953 1.90868 1.37040 1.40118 1.73843 1.22497 0.88389 1.05772 0.94029 1.70352 1.25443 1.13245 1.06897 1.22540 0.95573 1.05637 0.94614 1.22985 1.00410 1.02236 0.90917 1.42948 1.19206 1.40469 1.10080 0.73025 1.21970 0.92939 1.02506 0.81288 1.19880 0.78935 0.84898 0.85006 1.90715 1.56438 1.71468 1.20647 0.92874 0.96180 0.96474 0.91571 0.91195 0.90381 0.90904 0.88920 0.89339 0.89379 0.89639 0.90383 0.89524 0.80457 0.79701 0.89430 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 10 C 0.13 2.76 5.88 -4.05 -0.02 2.73 16 11 N -0.61 -11.01 2.95 -172.57 -0.51 -11.52 16 12 C 0.10 1.27 7.37 -2.86 -0.02 1.25 16 13 C -0.12 -1.09 6.26 -25.67 -0.16 -1.25 16 14 C -0.11 -1.48 0.68 -155.38 -0.10 -1.58 16 15 C -0.11 -1.15 5.79 -25.52 -0.15 -1.30 16 16 C 0.12 1.47 5.30 -2.85 -0.02 1.45 16 17 N -0.59 -8.75 3.34 -172.20 -0.57 -9.33 16 18 C 0.62 10.12 7.85 -12.53 -0.10 10.02 16 19 O -0.54 -10.16 17.37 5.27 0.09 -10.07 16 20 C 0.15 2.16 7.81 -154.52 -1.21 0.95 16 21 N -0.44 -5.74 8.67 -11.26 -0.10 -5.84 16 22 C -0.03 -0.30 11.85 -17.96 -0.21 -0.51 16 23 C -0.03 -0.21 12.00 -16.93 -0.20 -0.42 16 24 N -0.53 -5.56 6.14 -10.78 -0.07 -5.62 16 25 H 0.43 3.74 8.96 -40.82 -0.37 3.37 16 26 C 0.14 1.87 5.89 -3.14 -0.02 1.85 16 27 C 0.53 9.73 6.77 -11.36 -0.08 9.65 16 28 O -0.52 -11.82 17.29 5.56 0.10 -11.72 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.57 7.96 -51.93 -0.41 1.16 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.64 7.63 -51.93 -0.40 0.25 16 37 H 0.09 0.66 7.96 -51.93 -0.41 0.24 16 38 H 0.09 0.96 8.00 -51.93 -0.42 0.55 16 39 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 40 H 0.08 0.87 7.75 -51.93 -0.40 0.46 16 41 H 0.09 1.31 7.63 -51.93 -0.40 0.91 16 42 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.09 1.48 7.94 -51.93 -0.41 1.06 16 45 H 0.08 0.91 7.75 -51.92 -0.40 0.50 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -38.78 375.72 -9.07 -47.85 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.54 Total: 1.18 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -2.85 Total: 9.24 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.51 Total: -59.19 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.19 Total: -21.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.78 -9.07 -47.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271287484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -38.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds