Wall clock time and date at job start Tue Mar 31 2020 16:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00546 * 2 1 4 4 H 1.48501 * 109.47177 * 240.00047 * 3 2 1 5 5 H 1.48502 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47676 * 120.00062 * 3 2 1 7 7 C 1.37887 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.46981 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.46928 * 124.37602 * 270.00030 * 11 10 9 13 13 C 1.54807 * 105.54165 * 196.72038 * 12 11 10 14 14 C 1.53208 * 101.38851 * 335.83154 * 13 12 11 15 15 C 1.53706 * 111.54674 * 145.81295 * 14 13 12 16 16 C 1.54603 * 102.86616 * 153.75357 * 15 14 13 17 17 N 1.47132 * 107.32187 * 339.50680 * 16 15 14 18 18 C 1.34777 * 125.60605 * 178.91091 * 17 16 15 19 19 O 1.21613 * 119.99966 * 179.69292 * 18 17 16 20 20 C 1.47411 * 120.00082 * 359.96696 * 18 17 16 21 21 N 1.31615 * 125.86209 * 359.74953 * 20 18 17 22 22 C 1.33103 * 109.09412 * 179.97438 * 21 20 18 23 23 C 1.35564 * 108.34958 * 0.02562 * 22 21 20 24 24 N 1.35401 * 107.16125 * 359.77432 * 23 22 21 25 25 H 0.96999 * 126.44087 * 180.22597 * 24 23 22 26 26 C 1.47709 * 108.78854 * 358.64527 * 17 16 15 27 27 C 1.34891 * 124.38204 * 89.96930 * 11 10 9 28 28 O 1.21280 * 125.21758 * 358.76337 * 27 11 10 29 29 H 0.97008 * 119.99127 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47285 * 59.99783 * 9 7 2 31 31 H 1.08997 * 109.46924 * 300.00100 * 9 7 2 32 32 H 1.08998 * 109.47367 * 59.99737 * 10 9 7 33 33 H 1.09001 * 109.47067 * 299.99342 * 10 9 7 34 34 H 1.08999 * 110.23159 * 315.73536 * 12 11 10 35 35 H 1.08993 * 110.23494 * 77.61387 * 12 11 10 36 36 H 1.09002 * 111.03606 * 217.80646 * 13 12 11 37 37 H 1.08999 * 111.04020 * 93.86326 * 13 12 11 38 38 H 1.08992 * 110.75252 * 272.30245 * 15 14 13 39 39 H 1.08999 * 110.74961 * 35.47850 * 15 14 13 40 40 H 1.08997 * 109.99385 * 220.00450 * 16 15 14 41 41 H 1.08996 * 109.75113 * 98.87398 * 16 15 14 42 42 H 1.07993 * 125.82527 * 180.02562 * 22 21 20 43 43 H 1.07999 * 126.41846 * 180.02562 * 23 22 21 44 44 H 1.08990 * 110.39346 * 141.68415 * 26 17 16 45 45 H 1.09008 * 110.38942 * 263.95761 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0018 11 7 1.5125 -4.9309 0.0012 12 6 1.0963 -5.6491 1.2135 13 6 0.7618 -7.0875 0.7492 14 6 0.4341 -6.8594 -0.7299 15 6 0.8753 -8.0501 -1.5960 16 6 -0.0861 -7.9719 -2.8042 17 7 -1.2525 -7.1790 -2.3853 18 6 -2.3079 -6.8649 -3.1625 19 8 -3.2230 -6.2055 -2.7078 20 6 -2.3557 -7.3256 -4.5620 21 7 -1.4341 -8.0422 -5.1698 22 6 -1.8165 -8.2697 -6.4242 23 6 -3.0202 -7.6769 -6.6176 24 7 -3.3667 -7.0859 -5.4498 25 1 -4.1791 -6.5850 -5.2763 26 6 -1.0798 -6.7893 -0.9711 27 6 1.1323 -5.5904 -1.1124 28 8 1.3258 -5.2136 -2.2488 29 1 -0.4849 0.8402 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8710 -3.6041 0.8922 33 1 2.8723 -3.6049 -0.8878 34 1 1.9095 -5.6667 1.9391 35 1 0.2149 -5.1771 1.6475 36 1 -0.1019 -7.4808 1.2853 37 1 1.6234 -7.7455 0.8623 38 1 1.9109 -7.9330 -1.9149 39 1 0.7421 -8.9890 -1.0585 40 1 -0.4035 -8.9738 -3.0934 41 1 0.4130 -7.4834 -3.6410 42 1 -1.2624 -8.8308 -7.1620 43 1 -3.5968 -7.6795 -7.5308 44 1 -1.4435 -5.7746 -0.8096 45 1 -1.6029 -7.4879 -0.3180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271287484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:33 Heat of formation + Delta-G solvation = -27.195027 kcal Electronic energy + Delta-G solvation = -28921.105937 eV Core-core repulsion = 24938.503079 eV Total energy + Delta-G solvation = -3982.602858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.25784 -42.24628 -40.31756 -38.25194 -37.48301 -35.75340 -34.31935 -33.63110 -32.10105 -30.90972 -30.44412 -29.09436 -27.16938 -26.29500 -24.23204 -23.66760 -23.28804 -22.47188 -21.83398 -21.19092 -20.07192 -19.13136 -18.71820 -17.86548 -17.42498 -17.20261 -17.06831 -16.66473 -16.37178 -16.05236 -15.90554 -15.18583 -14.99397 -14.87789 -14.65468 -14.55579 -14.50481 -14.36263 -14.04002 -13.87685 -13.82893 -13.60412 -13.14048 -12.98212 -12.85827 -12.59478 -12.41548 -12.08915 -12.00818 -11.86300 -11.68459 -11.54615 -11.46195 -11.35741 -11.20152 -10.66323 -10.59867 -9.94078 -9.57522 -9.51632 -8.27322 -6.41516 0.25403 1.35246 1.36595 1.40550 1.48030 1.53103 1.60768 2.12779 2.27622 2.36476 2.39000 3.05799 3.08647 3.23481 3.31138 3.47127 3.83791 3.96336 4.00135 4.25047 4.29651 4.32657 4.35297 4.42251 4.44259 4.55004 4.60371 4.61328 4.75752 4.81600 4.86706 4.88741 4.97272 5.03495 5.11459 5.23128 5.25550 5.29973 5.41209 5.56937 5.60900 5.79036 6.10613 6.10757 6.21004 6.28814 6.63442 6.74503 6.93032 7.20920 7.29033 8.84751 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003212 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.872987 B = 8715.769698 C =10024.164556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.621 5.621 12 C 0.087 3.913 13 C -0.094 4.094 14 C -0.106 4.106 15 C -0.096 4.096 16 C 0.119 3.881 17 N -0.594 5.594 18 C 0.606 3.394 19 O -0.586 6.586 20 C 0.105 3.895 21 N -0.449 5.449 22 C -0.052 4.052 23 C 0.006 3.994 24 N -0.522 5.522 25 H 0.436 0.564 26 C 0.131 3.869 27 C 0.509 3.491 28 O -0.578 6.578 29 H 0.264 0.736 30 H -0.037 1.037 31 H -0.002 1.002 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.208 0.792 43 H 0.236 0.764 44 H 0.041 0.959 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -25.459 -4.656 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.353 5.353 12 C -0.035 4.035 13 C -0.132 4.132 14 C -0.110 4.110 15 C -0.134 4.134 16 C -0.003 4.003 17 N -0.325 5.325 18 C 0.394 3.606 19 O -0.467 6.467 20 C -0.153 4.153 21 N -0.173 5.173 22 C -0.205 4.205 23 C -0.134 4.134 24 N -0.125 5.125 25 H 0.277 0.723 26 C 0.009 3.991 27 C 0.297 3.703 28 O -0.457 6.457 29 H 0.073 0.927 30 H -0.019 1.019 31 H 0.017 0.983 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.225 0.775 43 H 0.252 0.748 44 H 0.060 0.940 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.562 -24.975 -4.570 25.519 hybrid contribution -1.135 2.387 -0.760 2.750 sum -3.697 -22.588 -5.330 23.501 Atomic orbital electron populations 1.70143 1.08202 1.28006 1.51136 1.26108 0.95783 1.03899 0.94289 0.85373 0.78152 0.77267 0.79490 1.19463 1.20866 1.17996 1.21540 0.93832 0.91720 1.51396 0.91218 1.19201 0.94585 0.93627 0.93961 1.21338 0.93684 0.81011 1.01771 1.48825 1.55661 1.22492 1.08302 1.22546 1.01566 0.92632 0.86756 1.22623 1.06110 0.95165 0.89287 1.21582 0.94588 0.94115 1.00738 1.22571 0.99433 0.97328 0.94073 1.22226 0.84590 0.95760 0.97723 1.48174 1.19789 1.52180 1.12348 1.16473 0.81758 0.79175 0.83178 1.90811 1.38645 1.42218 1.74992 1.22111 0.90470 1.08927 0.93793 1.70274 1.25522 1.12993 1.08478 1.23218 0.96732 1.06477 0.94059 1.23851 0.99702 0.98752 0.91067 1.43082 1.18820 1.40203 1.10353 0.72303 1.22154 0.94002 1.01088 0.81857 1.21020 0.78298 0.86773 0.84191 1.90665 1.58610 1.73373 1.23067 0.92735 1.01879 0.98321 0.88584 0.93079 0.87546 0.91868 0.85181 0.85703 0.89628 0.84498 0.88476 0.92901 0.77532 0.74805 0.93996 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.29 21.45 0.28 -60.09 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 8 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.39 5.30 29.85 0.16 1.55 16 10 C 0.14 6.37 5.88 86.38 0.51 6.88 16 11 N -0.62 -22.87 2.95 -818.21 -2.41 -25.29 16 12 C 0.09 2.06 7.37 86.91 0.64 2.70 16 13 C -0.09 -1.38 6.26 31.28 0.20 -1.18 16 14 C -0.11 -2.61 0.68 -52.75 -0.04 -2.65 16 15 C -0.10 -1.81 5.79 31.38 0.18 -1.62 16 16 C 0.12 3.01 5.30 86.80 0.46 3.47 16 17 N -0.59 -18.47 3.34 -816.98 -2.73 -21.20 16 18 C 0.61 21.30 7.85 86.66 0.68 21.98 16 19 O -0.59 -23.97 17.37 -4.07 -0.07 -24.04 16 20 C 0.11 3.08 7.81 136.28 1.06 4.15 16 21 N -0.45 -11.93 8.67 -189.53 -1.64 -13.57 16 22 C -0.05 -0.94 11.85 83.88 0.99 0.05 16 23 C 0.01 0.09 12.00 83.52 1.00 1.09 16 24 N -0.52 -11.04 6.14 -188.02 -1.16 -12.20 16 25 H 0.44 7.79 8.96 -92.71 -0.83 6.96 16 26 C 0.13 3.66 5.89 86.30 0.51 4.17 16 27 C 0.51 19.62 6.77 87.36 0.59 20.21 16 28 O -0.58 -28.56 17.29 -3.03 -0.05 -28.62 16 29 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 30 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 31 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.05 2.43 7.96 -2.39 -0.02 2.41 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.13 1.05 7.63 -2.39 -0.02 1.04 16 37 H 0.12 1.05 7.96 -2.39 -0.02 1.03 16 38 H 0.09 1.71 8.00 -2.39 -0.02 1.69 16 39 H 0.14 1.25 8.04 -2.39 -0.02 1.23 16 40 H 0.10 2.05 7.75 -2.39 -0.02 2.04 16 41 H 0.05 1.69 7.63 -2.39 -0.02 1.68 16 42 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.24 0.78 8.06 -2.91 -0.02 0.76 16 44 H 0.04 1.54 7.94 -2.39 -0.02 1.52 16 45 H 0.13 2.45 7.75 -2.38 -0.02 2.43 16 Total: -1.00 -96.28 375.72 2.08 -94.20 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.18 Total: 14.15 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 7.65 Total: 28.73 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -7.65 Total: -132.34 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.12 Total: -52.66 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -96.28 2.08 -94.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271287484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.004 kcal (2) G-P(sol) polarization free energy of solvation -96.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds