Wall clock time and date at job start Tue Mar 31 2020 17:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34765 * 125.64356 * 2 1 4 4 C 1.40878 * 107.05529 * 180.02562 * 3 2 1 5 5 C 1.36150 * 106.73076 * 0.02562 * 4 3 2 6 6 C 1.47333 * 125.95004 * 179.97438 * 5 4 3 7 7 C 1.36998 * 126.63429 * 179.97438 * 6 5 4 8 8 C 1.41111 * 105.41930 * 179.97438 * 7 6 5 9 9 C 1.47749 * 126.29896 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00551 * 353.72661 * 9 8 7 11 11 N 1.34778 * 120.00042 * 173.72789 * 9 8 7 12 12 C 1.46500 * 119.99772 * 3.20892 * 11 9 8 13 13 C 1.46501 * 120.00244 * 183.21233 * 11 9 8 14 14 C 1.53000 * 109.46948 * 89.99975 * 13 11 9 15 15 N 1.46501 * 109.46948 * 180.02562 * 14 13 11 16 16 C 1.46500 * 119.99983 * 89.99684 * 15 14 13 17 17 C 1.36938 * 120.00036 * 270.00025 * 15 14 13 18 18 H 1.08002 * 120.00091 * 31.55894 * 17 15 14 19 19 C 1.38816 * 120.00156 * 211.55538 * 17 15 14 20 20 N 1.31617 * 119.99508 * 6.69454 * 19 17 15 21 21 Si 1.86800 * 120.00131 * 186.69555 * 19 17 15 22 22 H 1.48495 * 109.47231 * 89.99901 * 21 19 17 23 23 H 1.48495 * 109.46995 * 210.00247 * 21 19 17 24 24 H 1.48499 * 109.46889 * 329.99882 * 21 19 17 25 25 N 1.31852 * 107.39781 * 359.74048 * 8 7 6 26 26 N 1.28446 * 110.50352 * 0.43673 * 25 8 7 27 27 H 0.97007 * 125.02691 * 179.82060 * 26 25 8 28 28 O 1.34323 * 125.65099 * 180.30249 * 2 1 3 29 29 H 1.08996 * 109.47074 * 90.00352 * 1 2 3 30 30 H 1.09001 * 109.46990 * 210.00495 * 1 2 3 31 31 H 1.08997 * 109.47639 * 330.00236 * 1 2 3 32 32 H 1.07995 * 126.47272 * 0.02562 * 3 2 1 33 33 H 1.08006 * 126.63482 * 179.97438 * 4 3 2 34 34 H 1.08000 * 127.28828 * 359.95166 * 7 6 5 35 35 H 1.09007 * 109.46937 * 83.99881 * 12 11 9 36 36 H 1.09003 * 109.47187 * 203.99388 * 12 11 9 37 37 H 1.09004 * 109.47324 * 323.99951 * 12 11 9 38 38 H 1.08998 * 109.46769 * 210.00062 * 13 11 9 39 39 H 1.08994 * 109.46775 * 329.99725 * 13 11 9 40 40 H 1.08998 * 109.47456 * 299.99666 * 14 13 11 41 41 H 1.09002 * 109.47383 * 60.00029 * 14 13 11 42 42 H 1.08997 * 109.47064 * 85.27800 * 16 15 14 43 43 H 1.09003 * 109.47404 * 205.27466 * 16 15 14 44 44 H 1.09000 * 109.47470 * 325.27580 * 16 15 14 45 45 H 0.97007 * 119.99720 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2923 1.0952 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5835 -0.7147 -0.0015 6 6 4.7475 -1.6178 -0.0029 7 6 4.7194 -2.9875 -0.0034 8 6 6.0718 -3.3905 -0.0054 9 6 6.5700 -4.7815 -0.0071 10 8 5.7900 -5.7067 0.1082 11 7 7.8893 -5.0246 -0.1365 12 6 8.8364 -3.9090 -0.2047 13 6 8.3763 -6.4044 -0.2090 14 6 8.4101 -6.8571 -1.6700 15 7 8.8965 -8.2371 -1.7425 16 6 7.9490 -9.3523 -1.6744 17 6 10.2370 -8.4847 -1.8737 18 1 10.9564 -7.8079 -1.4369 19 6 10.6711 -9.6054 -2.5683 20 7 9.8037 -10.3576 -3.2118 21 14 12.4863 -10.0460 -2.5895 22 1 12.7913 -10.9430 -1.4461 23 1 12.8128 -10.7379 -3.8622 24 1 13.2976 -8.8074 -2.4771 25 7 6.8089 -2.2973 -0.0117 26 7 6.0629 -1.2516 -0.0047 27 1 6.3863 -0.3370 -0.0049 28 8 2.2899 -1.0915 -0.0058 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.9607 2.1229 0.0004 33 1 4.5147 1.2622 -0.0012 34 1 3.8470 -3.6241 -0.0021 35 1 9.0862 -3.5821 0.8048 36 1 9.7429 -4.2326 -0.7164 37 1 8.3851 -3.0821 -0.7531 38 1 9.3806 -6.4577 0.2113 39 1 7.7103 -7.0549 0.3578 40 1 7.4058 -6.8038 -2.0903 41 1 9.0762 -6.2065 -2.2368 42 1 7.5537 -9.5545 -2.6698 43 1 8.4585 -10.2397 -1.2987 44 1 7.1297 -9.0927 -1.0039 45 1 10.1071 -11.1406 -3.6975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272171641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:23 Heat of formation + Delta-G solvation = 92.601712 kcal Electronic energy + Delta-G solvation = -27370.492907 eV Core-core repulsion = 23393.084826 eV Total energy + Delta-G solvation = -3977.408082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.22203 -42.59156 -39.27861 -35.99484 -34.82057 -33.75348 -33.28219 -32.17725 -31.38540 -30.76856 -28.54463 -26.65225 -26.46676 -25.71831 -24.54068 -22.90006 -22.25747 -21.96196 -20.72787 -20.39887 -19.19564 -18.52368 -17.20554 -16.81678 -16.57057 -16.09172 -15.93670 -15.70039 -14.86971 -14.79180 -14.54409 -14.11845 -13.68366 -13.64553 -13.51853 -13.48590 -13.36681 -13.05148 -12.83607 -12.75789 -12.49237 -12.30598 -12.28367 -11.95124 -11.20825 -10.94208 -10.82213 -10.76493 -10.61512 -10.43783 -10.15462 -10.04423 -9.95911 -9.79452 -9.69991 -9.62948 -8.57459 -8.31782 -8.28284 -6.53794 -5.69336 -3.22667 0.59450 1.52186 1.84849 1.86476 2.47857 2.77474 3.25580 3.40502 3.46388 3.47902 3.49788 3.97105 4.20744 4.33015 4.44517 4.54086 4.73838 4.91915 4.97424 5.03386 5.18691 5.28598 5.33762 5.46034 5.47845 5.52927 5.60498 5.70265 5.81607 5.83173 5.96996 5.99265 6.12130 6.25672 6.39818 6.48627 6.64159 6.70894 6.77476 7.00565 7.08224 7.46180 7.49003 7.69242 7.79565 7.85346 8.39298 8.52237 9.30476 9.91318 10.46543 11.36681 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.001991 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.869880 B =14062.931955 C =14673.475344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.001 3.999 3 C -0.208 4.208 4 C -0.190 4.190 5 C 0.055 3.945 6 C 0.074 3.926 7 C -0.141 4.141 8 C 0.003 3.997 9 C 0.592 3.408 10 O -0.529 6.529 11 N -0.595 5.595 12 C 0.075 3.925 13 C 0.092 3.908 14 C 0.142 3.858 15 N -0.597 5.597 16 C 0.161 3.839 17 C -0.260 4.260 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 N -0.234 5.234 26 N -0.372 5.372 27 H 0.447 0.553 28 O -0.157 6.157 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.019 0.981 43 H 0.050 0.950 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 26.972 7.816 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C -0.227 4.227 4 C -0.211 4.211 5 C 0.003 3.997 6 C -0.050 4.050 7 C -0.169 4.169 8 C -0.156 4.156 9 C 0.377 3.623 10 O -0.403 6.403 11 N -0.327 5.327 12 C -0.069 4.069 13 C -0.032 4.032 14 C 0.013 3.987 15 N -0.320 5.320 16 C 0.017 3.983 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 N -0.070 5.070 26 N -0.089 5.089 27 H 0.292 0.708 28 O -0.053 6.053 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.172 26.248 7.751 30.820 hybrid contribution 0.577 0.265 -0.101 0.643 sum -13.595 26.513 7.650 30.762 Atomic orbital electron populations 1.20381 0.84535 1.04441 1.03938 1.22658 0.94167 0.83681 1.04508 1.21465 0.92184 0.99646 1.09447 1.21730 0.98771 0.92706 1.07876 1.18738 0.81366 0.91042 1.08537 1.18186 0.83473 0.92219 1.11155 1.21868 0.97719 0.92032 1.05231 1.22023 0.91771 0.93038 1.08805 1.16920 0.82507 0.85264 0.77604 1.90813 1.55532 1.43641 1.50343 1.47820 1.05595 1.08666 1.70648 1.22094 0.93367 0.89526 1.01864 1.22579 0.99474 0.79135 1.01977 1.21004 0.97654 0.87657 0.92346 1.43751 1.03999 0.99032 1.85227 1.20767 0.90165 0.90382 0.97022 1.19129 0.82460 1.09193 1.28222 0.91824 1.25259 0.97528 0.99502 0.96900 1.70036 1.32623 1.17320 1.34749 0.86260 0.85032 0.78214 0.77009 1.21419 1.21690 1.20424 1.73825 1.21407 0.93205 1.18605 1.43571 1.02157 1.09142 1.54009 0.70793 1.84046 1.15054 1.34868 1.71288 0.89677 0.90124 0.89029 0.82905 0.83241 0.81272 0.92919 0.90897 0.89326 0.90558 0.90305 0.94382 0.93536 0.96262 0.93104 0.98313 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.00 0.37 0.07 16 2 C 0.00 0.01 7.31 -35.54 -0.26 -0.25 16 3 C -0.21 -1.42 10.78 -39.81 -0.43 -1.85 16 4 C -0.19 -1.40 10.85 -39.33 -0.43 -1.83 16 5 C 0.05 0.53 7.17 -36.63 -0.26 0.27 16 6 C 0.07 0.78 7.10 -82.52 -0.59 0.19 16 7 C -0.14 -1.84 10.77 -38.94 -0.42 -2.26 16 8 C 0.00 0.05 6.80 -82.88 -0.56 -0.52 16 9 C 0.59 10.42 7.68 -12.37 -0.10 10.32 16 10 O -0.53 -11.03 16.48 5.31 0.09 -10.94 16 11 N -0.59 -9.95 2.87 -182.73 -0.53 -10.48 16 12 C 0.08 0.98 9.61 59.85 0.58 1.55 16 13 C 0.09 1.79 5.73 -4.04 -0.02 1.77 16 14 C 0.14 3.18 6.01 -4.04 -0.02 3.16 16 15 N -0.60 -15.83 2.90 -181.12 -0.52 -16.35 16 16 C 0.16 4.26 9.00 59.85 0.54 4.80 16 17 C -0.26 -7.29 9.57 -15.06 -0.14 -7.43 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 19 C 0.01 0.21 5.15 -17.43 -0.09 0.12 16 20 N -0.90 -27.10 10.99 55.49 0.61 -26.49 16 21 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 N -0.23 -2.73 8.70 33.36 0.29 -2.44 16 26 N -0.37 -3.28 6.90 33.25 0.23 -3.05 16 27 H 0.45 2.12 8.96 -190.45 -1.71 0.42 16 28 O -0.16 -1.61 10.67 4.46 0.05 -1.56 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 37 H 0.09 1.08 5.36 -51.93 -0.28 0.81 16 38 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.08 1.66 7.38 -51.93 -0.38 1.28 16 40 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.02 0.54 7.75 -51.93 -0.40 0.13 16 43 H 0.05 1.41 7.11 -51.93 -0.37 1.04 16 44 H 0.00 -0.04 8.11 -51.93 -0.42 -0.46 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -35.30 384.10 -8.60 -43.89 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.74 Total: -3.49 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.84 Total: 8.11 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.08 Total: -58.82 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.14 Total: -12.50 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.30 -8.60 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272171641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.495 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds