Wall clock time and date at job start Tue Mar 31 2020 17:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34765 * 125.64356 * 2 1 4 4 C 1.40878 * 107.05529 * 180.02562 * 3 2 1 5 5 C 1.36150 * 106.73076 * 0.02562 * 4 3 2 6 6 C 1.47333 * 125.95004 * 179.97438 * 5 4 3 7 7 C 1.36998 * 126.63429 * 179.97438 * 6 5 4 8 8 C 1.41111 * 105.41930 * 179.97438 * 7 6 5 9 9 C 1.47749 * 126.29896 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00551 * 353.72661 * 9 8 7 11 11 N 1.34778 * 120.00042 * 173.72789 * 9 8 7 12 12 C 1.46500 * 119.99772 * 3.20892 * 11 9 8 13 13 C 1.46501 * 120.00244 * 183.21233 * 11 9 8 14 14 C 1.53000 * 109.46948 * 89.99975 * 13 11 9 15 15 N 1.46501 * 109.46948 * 180.02562 * 14 13 11 16 16 C 1.46500 * 119.99983 * 89.99684 * 15 14 13 17 17 C 1.36938 * 120.00036 * 270.00025 * 15 14 13 18 18 H 1.08002 * 120.00091 * 31.55894 * 17 15 14 19 19 C 1.38816 * 120.00156 * 211.55538 * 17 15 14 20 20 N 1.31617 * 119.99508 * 6.69454 * 19 17 15 21 21 Si 1.86800 * 120.00131 * 186.69555 * 19 17 15 22 22 H 1.48495 * 109.47231 * 89.99901 * 21 19 17 23 23 H 1.48495 * 109.46995 * 210.00247 * 21 19 17 24 24 H 1.48499 * 109.46889 * 329.99882 * 21 19 17 25 25 N 1.31852 * 107.39781 * 359.74048 * 8 7 6 26 26 N 1.28446 * 110.50352 * 0.43673 * 25 8 7 27 27 H 0.97007 * 125.02691 * 179.82060 * 26 25 8 28 28 O 1.34323 * 125.65099 * 180.30249 * 2 1 3 29 29 H 1.08996 * 109.47074 * 90.00352 * 1 2 3 30 30 H 1.09001 * 109.46990 * 210.00495 * 1 2 3 31 31 H 1.08997 * 109.47639 * 330.00236 * 1 2 3 32 32 H 1.07995 * 126.47272 * 0.02562 * 3 2 1 33 33 H 1.08006 * 126.63482 * 179.97438 * 4 3 2 34 34 H 1.08000 * 127.28828 * 359.95166 * 7 6 5 35 35 H 1.09007 * 109.46937 * 83.99881 * 12 11 9 36 36 H 1.09003 * 109.47187 * 203.99388 * 12 11 9 37 37 H 1.09004 * 109.47324 * 323.99951 * 12 11 9 38 38 H 1.08998 * 109.46769 * 210.00062 * 13 11 9 39 39 H 1.08994 * 109.46775 * 329.99725 * 13 11 9 40 40 H 1.08998 * 109.47456 * 299.99666 * 14 13 11 41 41 H 1.09002 * 109.47383 * 60.00029 * 14 13 11 42 42 H 1.08997 * 109.47064 * 85.27800 * 16 15 14 43 43 H 1.09003 * 109.47404 * 205.27466 * 16 15 14 44 44 H 1.09000 * 109.47470 * 325.27580 * 16 15 14 45 45 H 0.97007 * 119.99720 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2923 1.0952 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5835 -0.7147 -0.0015 6 6 4.7475 -1.6178 -0.0029 7 6 4.7194 -2.9875 -0.0034 8 6 6.0718 -3.3905 -0.0054 9 6 6.5700 -4.7815 -0.0071 10 8 5.7900 -5.7067 0.1082 11 7 7.8893 -5.0246 -0.1365 12 6 8.8364 -3.9090 -0.2047 13 6 8.3763 -6.4044 -0.2090 14 6 8.4101 -6.8571 -1.6700 15 7 8.8965 -8.2371 -1.7425 16 6 7.9490 -9.3523 -1.6744 17 6 10.2370 -8.4847 -1.8737 18 1 10.9564 -7.8079 -1.4369 19 6 10.6711 -9.6054 -2.5683 20 7 9.8037 -10.3576 -3.2118 21 14 12.4863 -10.0460 -2.5895 22 1 12.7913 -10.9430 -1.4461 23 1 12.8128 -10.7379 -3.8622 24 1 13.2976 -8.8074 -2.4771 25 7 6.8089 -2.2973 -0.0117 26 7 6.0629 -1.2516 -0.0047 27 1 6.3863 -0.3370 -0.0049 28 8 2.2899 -1.0915 -0.0058 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.9607 2.1229 0.0004 33 1 4.5147 1.2622 -0.0012 34 1 3.8470 -3.6241 -0.0021 35 1 9.0862 -3.5821 0.8048 36 1 9.7429 -4.2326 -0.7164 37 1 8.3851 -3.0821 -0.7531 38 1 9.3806 -6.4577 0.2113 39 1 7.7103 -7.0549 0.3578 40 1 7.4058 -6.8038 -2.0903 41 1 9.0762 -6.2065 -2.2368 42 1 7.5537 -9.5545 -2.6698 43 1 8.4585 -10.2397 -1.2987 44 1 7.1297 -9.0927 -1.0039 45 1 10.1071 -11.1406 -3.6975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272171641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:22 Heat of formation + Delta-G solvation = 69.984196 kcal Electronic energy + Delta-G solvation = -27371.473677 eV Core-core repulsion = 23393.084826 eV Total energy + Delta-G solvation = -3978.388851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.98275 -43.35253 -40.67095 -37.80939 -36.45599 -34.37860 -34.00730 -33.50445 -32.94596 -31.53183 -30.19429 -27.97113 -27.61162 -27.24484 -26.09115 -24.11088 -23.10801 -22.89117 -22.19392 -21.38367 -20.18050 -19.54503 -18.74285 -18.23099 -17.53199 -17.37127 -16.94069 -16.80103 -16.55035 -15.96084 -15.64641 -15.40847 -15.23286 -15.00137 -14.67223 -14.26282 -14.01331 -14.00454 -13.90560 -13.87952 -13.79137 -13.59188 -13.33933 -13.03902 -12.82594 -12.78653 -12.72025 -12.43880 -12.20563 -11.95322 -11.85908 -11.59981 -11.33744 -11.25665 -10.70790 -10.65125 -10.59903 -9.79824 -8.97515 -8.65421 -7.85062 -5.42958 -0.13031 0.42191 1.18305 1.21841 1.48466 1.50308 1.59371 1.77757 1.83121 2.21885 2.28325 2.52332 3.10295 3.31251 3.33039 3.70540 3.78734 3.93414 3.96030 4.11382 4.24067 4.37350 4.41779 4.46232 4.58100 4.66389 4.72373 4.76342 4.78445 4.80185 4.85657 4.90839 4.95758 4.97737 5.09160 5.13906 5.17100 5.28840 5.51999 5.54223 5.57997 5.65337 5.80913 6.06922 6.32900 6.36520 6.62629 7.05110 7.13849 7.80250 8.33036 9.20456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.001991 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.869880 B =14062.931955 C =14673.475344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.006 4.006 3 C -0.216 4.216 4 C -0.169 4.169 5 C 0.014 3.986 6 C 0.097 3.903 7 C -0.171 4.171 8 C -0.020 4.020 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.596 5.596 12 C 0.074 3.926 13 C 0.111 3.889 14 C 0.148 3.852 15 N -0.614 5.614 16 C 0.177 3.823 17 C -0.269 4.269 18 H 0.076 0.924 19 C -0.051 4.051 20 N -0.940 5.940 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.262 1.262 25 N -0.224 5.224 26 N -0.344 5.344 27 H 0.468 0.532 28 O -0.185 6.185 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.158 0.842 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.052 0.948 42 H -0.005 1.005 43 H 0.030 0.970 44 H 0.015 0.985 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 30.863 8.477 34.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.234 4.234 4 C -0.189 4.189 5 C -0.037 4.037 6 C -0.028 4.028 7 C -0.199 4.199 8 C -0.178 4.178 9 C 0.375 3.625 10 O -0.452 6.452 11 N -0.327 5.327 12 C -0.068 4.068 13 C -0.014 4.014 14 C 0.021 3.979 15 N -0.338 5.338 16 C 0.032 3.968 17 C -0.399 4.399 18 H 0.093 0.907 19 C -0.246 4.246 20 N -0.586 5.586 21 Si 0.804 3.196 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.186 1.186 25 N -0.062 5.062 26 N -0.064 5.064 27 H 0.318 0.682 28 O -0.082 6.082 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.199 0.801 33 H 0.199 0.801 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.013 0.987 43 H 0.049 0.951 44 H 0.034 0.966 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.389 30.224 8.431 34.115 hybrid contribution 0.180 -0.723 -0.298 0.803 sum -13.210 29.501 8.133 33.331 Atomic orbital electron populations 1.20585 0.82410 1.05542 1.04919 1.23472 0.95578 0.83444 1.03166 1.21890 0.91781 1.00754 1.09002 1.22208 1.00305 0.91805 1.04591 1.18789 0.81026 0.91766 1.12154 1.18165 0.84384 0.91409 1.08866 1.21844 0.97075 0.93433 1.07520 1.21489 0.92447 0.92118 1.11705 1.17350 0.82300 0.86298 0.76551 1.90774 1.56655 1.45403 1.52372 1.47844 1.06121 1.08424 1.70299 1.22300 0.92711 0.88455 1.03306 1.22059 0.99534 0.80608 0.99151 1.21032 0.96654 0.85908 0.94345 1.43979 1.03850 1.00364 1.85601 1.20490 0.90384 0.90067 0.95832 1.19530 0.83254 1.09343 1.27755 0.90651 1.26134 1.02102 0.99621 0.96789 1.70217 1.34718 1.17759 1.35863 0.85130 0.79663 0.78269 0.76512 1.21102 1.22202 1.18641 1.73702 1.21202 0.93032 1.18297 1.43570 1.01440 1.09603 1.51808 0.68229 1.84031 1.15690 1.36487 1.71969 0.88641 0.90340 0.86602 0.80128 0.80142 0.82405 0.91091 0.90248 0.88275 0.89490 0.92398 0.95816 0.92997 0.98652 0.95071 0.96626 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.41 71.23 0.74 0.27 16 2 C -0.01 -0.08 7.31 24.89 0.18 0.11 16 3 C -0.22 -2.27 10.78 22.12 0.24 -2.03 16 4 C -0.17 -1.96 10.85 22.43 0.24 -1.72 16 5 C 0.01 0.24 7.17 24.18 0.17 0.42 16 6 C 0.10 1.95 7.10 40.51 0.29 2.24 16 7 C -0.17 -4.60 10.77 22.68 0.24 -4.36 16 8 C -0.02 -0.57 6.80 42.36 0.29 -0.28 16 9 C 0.59 21.27 7.68 86.76 0.67 21.94 16 10 O -0.57 -25.30 16.48 -3.92 -0.06 -25.36 16 11 N -0.60 -19.85 2.87 -850.29 -2.44 -22.29 16 12 C 0.07 1.80 9.61 127.77 1.23 3.03 16 13 C 0.11 4.35 5.73 86.38 0.49 4.84 16 14 C 0.15 6.73 6.01 86.38 0.52 7.25 16 15 N -0.61 -33.11 2.90 -726.93 -2.11 -35.22 16 16 C 0.18 9.71 9.00 127.77 1.15 10.86 16 17 C -0.27 -15.05 9.57 84.03 0.80 -14.25 16 18 H 0.08 3.97 7.84 -2.91 -0.02 3.95 16 19 C -0.05 -2.92 5.15 84.86 0.44 -2.48 16 20 N -0.94 -57.63 10.99 21.65 0.24 -57.39 16 21 Si 0.98 45.30 29.56 68.60 2.03 47.33 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 N -0.22 -4.88 8.70 -48.38 -0.42 -5.30 16 26 N -0.34 -5.27 6.90 -48.73 -0.34 -5.61 16 27 H 0.47 2.77 8.96 -220.00 -1.97 0.80 16 28 O -0.19 -3.72 10.67 -6.96 -0.07 -3.79 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.08 1.84 8.03 -2.39 -0.02 1.82 16 37 H 0.10 2.22 5.36 -2.38 -0.01 2.21 16 38 H 0.09 3.21 8.07 -2.39 -0.02 3.19 16 39 H 0.06 2.51 7.38 -2.39 -0.02 2.50 16 40 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 41 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 42 H 0.00 -0.29 7.75 -2.39 -0.02 -0.30 16 43 H 0.03 1.78 7.11 -2.39 -0.02 1.76 16 44 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 45 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -78.91 384.10 3.56 -75.35 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.96 Total: 6.44 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.70 Total: 25.84 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -5.07 Total: -125.81 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.14 Total: -29.15 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.91 3.56 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272171641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.334 kcal (2) G-P(sol) polarization free energy of solvation -78.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds