Wall clock time and date at job start Tue Mar 31 2020 16:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46767 * 269.99548 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99809 * 3 2 1 6 6 H 1.48493 * 109.46960 * 149.99799 * 3 2 1 7 7 C 1.37877 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99516 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47227 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.46274 * 118.71322 * 90.00028 * 11 10 9 13 13 C 1.52552 * 109.56645 * 163.94647 * 12 11 10 14 14 C 1.53388 * 113.83735 * 176.52616 * 13 12 11 15 15 N 1.48064 * 86.02851 * 91.25356 * 14 13 12 16 16 C 1.46905 * 110.99881 * 137.23034 * 15 14 13 17 17 C 1.50694 * 109.46770 * 70.55030 * 16 15 14 18 18 C 1.38922 * 121.01688 * 89.99990 * 17 16 15 19 19 C 1.38562 * 117.97705 * 180.02562 * 18 17 16 20 20 N 1.31967 * 119.84562 * 0.02562 * 19 18 17 21 21 N 1.28351 * 122.17868 * 359.97438 * 20 19 18 22 22 C 1.31967 * 122.18038 * 359.70240 * 21 20 19 23 23 C 1.48065 * 90.84038 * 24.30826 * 15 14 13 24 24 O 1.42683 * 112.47735 * 45.21244 * 13 12 11 25 25 C 1.43046 * 112.95067 * 295.90172 * 24 13 12 26 26 C 1.33510 * 118.78088 * 270.15368 * 11 10 9 27 27 O 1.21282 * 118.23193 * 3.21215 * 26 11 10 28 28 H 0.97010 * 120.00079 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46439 * 60.00251 * 9 7 2 30 30 H 1.08994 * 109.46900 * 300.00770 * 9 7 2 31 31 H 1.08998 * 109.47018 * 60.00422 * 10 9 7 32 32 H 1.08996 * 109.47146 * 300.00023 * 10 9 7 33 33 H 1.08998 * 109.45376 * 43.91613 * 12 11 10 34 34 H 1.09006 * 109.45764 * 283.97292 * 12 11 10 35 35 H 1.09003 * 113.78313 * 205.53489 * 14 13 12 36 36 H 1.09001 * 113.77973 * 336.97962 * 14 13 12 37 37 H 1.08992 * 109.46747 * 190.55025 * 16 15 14 38 38 H 1.09000 * 109.46822 * 310.55141 * 16 15 14 39 39 H 1.08007 * 121.00887 * 0.02562 * 18 17 16 40 40 H 1.07994 * 120.07753 * 180.02562 * 19 18 17 41 41 H 1.08000 * 120.07399 * 180.29679 * 22 21 20 42 42 H 1.09007 * 113.78333 * 221.42086 * 23 15 14 43 43 H 1.08994 * 113.78809 * 89.97428 * 23 15 14 44 44 H 1.09002 * 109.34998 * 167.53007 * 25 24 13 45 45 H 1.09000 * 109.35269 * 287.23343 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 7 5.4865 -2.6366 0.0009 12 6 6.1893 -2.6367 1.2838 13 6 7.6462 -3.0343 1.0681 14 6 8.4976 -2.9845 2.3431 15 7 8.1242 -4.4058 2.5245 16 6 9.2825 -5.2046 2.9467 17 6 9.6493 -4.8474 4.3640 18 6 9.0916 -5.5259 5.4404 19 6 9.4731 -5.1452 6.7169 20 7 10.3412 -4.1644 6.8778 21 7 10.8564 -3.5375 5.8834 22 6 10.5569 -3.8356 4.6332 23 6 7.8815 -4.5502 1.0710 24 8 8.2358 -2.3631 -0.0444 25 6 7.6242 -2.7065 -1.2911 26 6 6.1292 -2.6334 -1.1692 27 8 5.4704 -2.5707 -2.1856 28 1 -0.4851 0.8401 -0.0004 29 1 3.8744 -0.6801 0.8912 30 1 3.8751 -0.6804 -0.8887 31 1 3.6585 -3.1501 -0.8893 32 1 3.6577 -3.1506 0.8907 33 1 5.7144 -3.3496 1.9578 34 1 6.1461 -1.6394 1.7216 35 1 9.5602 -2.8295 2.1563 36 1 8.0985 -2.3236 3.1125 37 1 9.0325 -6.2641 2.8920 38 1 10.1267 -4.9961 2.2893 39 1 8.3823 -6.3258 5.2868 40 1 9.0610 -5.6500 7.5781 41 1 11.0145 -3.2889 3.8219 42 1 6.9928 -5.1334 0.8295 43 1 8.7613 -4.8595 0.5070 44 1 7.9582 -2.0109 -2.0610 45 1 7.9148 -3.7196 -1.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273271710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:20 Heat of formation + Delta-G solvation = 34.590366 kcal Electronic energy + Delta-G solvation = -28460.513732 eV Core-core repulsion = 24480.590089 eV Total energy + Delta-G solvation = -3979.923643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84125 -41.20522 -39.49980 -37.14181 -35.63989 -34.50999 -33.04327 -32.95628 -30.88066 -30.22942 -28.16438 -27.06407 -26.75552 -24.98340 -24.75464 -24.61704 -22.57195 -21.32141 -20.19242 -18.39112 -18.13293 -17.97073 -17.22150 -17.14851 -16.62117 -16.47260 -16.09685 -15.81998 -15.50827 -15.20498 -14.89167 -14.42576 -14.22502 -14.01972 -13.95504 -13.77959 -13.29754 -13.28422 -13.03477 -12.86481 -12.65207 -12.36758 -12.18977 -11.66494 -11.58777 -11.32569 -11.16413 -10.95673 -10.68747 -10.52820 -10.44985 -10.23732 -10.11202 -10.05544 -9.86039 -9.51954 -9.39910 -9.15883 -8.55494 -8.34650 -6.06756 -4.05488 0.30104 0.50018 2.70075 2.85540 3.11085 3.24268 3.31662 3.38207 3.41021 3.41815 3.70932 3.77108 3.98368 3.99508 4.13587 4.16957 4.37133 4.44278 4.45049 4.59637 4.66540 4.79215 4.85316 4.95935 4.98231 5.04484 5.18599 5.27809 5.30410 5.32803 5.36141 5.41783 5.44756 5.61364 5.63464 5.76405 5.92009 6.24864 6.28428 6.45078 6.58934 6.66044 7.20317 7.31085 7.66331 7.75627 8.29277 8.31055 8.47877 8.96056 9.55387 11.06331 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002790 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.114257 B =10032.284007 C =11044.691110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.022 4.022 10 C 0.123 3.877 11 N -0.599 5.599 12 C 0.114 3.886 13 C 0.070 3.930 14 C 0.023 3.977 15 N -0.464 5.464 16 C 0.062 3.938 17 C -0.079 4.079 18 C -0.099 4.099 19 C 0.041 3.959 20 N -0.246 5.246 21 N -0.242 5.242 22 C 0.046 3.954 23 C -0.017 4.017 24 O -0.357 6.357 25 C 0.053 3.947 26 C 0.477 3.523 27 O -0.537 6.537 28 H 0.264 0.736 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.872 -13.933 8.134 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.060 4.060 10 C 0.003 3.997 11 N -0.331 5.331 12 C -0.009 4.009 13 C 0.029 3.971 14 C -0.106 4.106 15 N -0.188 5.188 16 C -0.067 4.067 17 C -0.091 4.091 18 C -0.128 4.128 19 C -0.123 4.123 20 N -0.088 5.088 21 N -0.083 5.083 22 C -0.119 4.119 23 C -0.146 4.146 24 O -0.275 6.275 25 C -0.026 4.026 26 C 0.264 3.736 27 O -0.414 6.414 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.170 0.830 40 H 0.191 0.809 41 H 0.185 0.815 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.147 0.853 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.903 -12.889 9.152 28.658 hybrid contribution -0.030 0.006 -1.524 1.524 sum 23.873 -12.883 7.628 28.180 Atomic orbital electron populations 1.69905 1.06241 1.26961 1.50880 1.24968 0.94712 0.99114 0.94373 0.86769 0.80200 0.83611 0.78634 1.20213 1.21314 1.19215 1.20946 0.88881 0.94668 1.51310 0.90837 1.19832 0.97354 0.92136 0.96661 1.21754 0.74899 1.00621 1.02462 1.47703 1.08892 1.71722 1.04824 1.21683 0.89082 1.03404 0.86748 1.23305 0.93927 0.91669 0.88195 1.24111 0.99743 0.91604 0.95095 1.68699 1.30863 1.02980 1.16255 1.21594 0.93697 1.00339 0.91035 1.20926 0.95619 0.95648 0.96858 1.22356 0.98134 0.99734 0.92607 1.24386 0.94780 0.95047 0.98037 1.73021 1.06450 1.04636 1.24688 1.73068 1.18150 1.19976 0.97098 1.24284 0.95363 0.95093 0.97129 1.24634 1.03337 0.97247 0.89349 1.88104 1.57343 1.67906 1.14147 1.22784 0.89003 1.03507 0.87354 1.20633 0.91062 0.77876 0.84076 1.90783 1.66674 1.49400 1.34571 0.92652 0.96710 0.96424 0.90018 0.90968 0.88423 0.90240 0.89292 0.87671 0.88364 0.91779 0.82984 0.80944 0.81492 0.87920 0.89601 0.85345 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.02 -0.53 4.36 -27.89 -0.12 -0.65 16 10 C 0.12 2.46 5.20 -4.04 -0.02 2.43 16 11 N -0.60 -9.79 2.83 -174.73 -0.49 -10.29 16 12 C 0.11 1.43 5.79 -4.39 -0.03 1.40 16 13 C 0.07 0.67 1.21 -90.51 -0.11 0.56 16 14 C 0.02 0.17 6.40 -2.99 -0.02 0.15 16 15 N -0.46 -3.19 6.14 -242.35 -1.49 -4.68 16 16 C 0.06 0.30 5.03 -4.98 -0.03 0.28 16 17 C -0.08 -0.49 5.15 -104.25 -0.54 -1.02 16 18 C -0.10 -0.57 9.93 -39.21 -0.39 -0.96 16 19 C 0.04 0.29 11.31 -17.37 -0.20 0.09 16 20 N -0.25 -2.55 11.51 30.55 0.35 -2.20 16 21 N -0.24 -2.54 11.50 30.55 0.35 -2.19 16 22 C 0.05 0.34 10.35 -17.37 -0.18 0.16 16 23 C -0.02 -0.13 6.67 -2.98 -0.02 -0.14 16 24 O -0.36 -3.96 10.66 -35.23 -0.38 -4.34 16 25 C 0.05 0.61 6.67 35.75 0.24 0.84 16 26 C 0.48 7.91 7.56 -11.81 -0.09 7.82 16 27 O -0.54 -11.30 16.32 5.56 0.09 -11.21 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 31 H 0.08 1.77 7.29 -51.93 -0.38 1.39 16 32 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 33 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.54 7.21 -51.93 -0.37 0.17 16 36 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.10 0.38 8.11 -51.93 -0.42 -0.04 16 38 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 39 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 40 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.17 0.85 7.55 -52.49 -0.40 0.45 16 42 H 0.10 0.82 8.09 -51.92 -0.42 0.40 16 43 H 0.09 0.50 7.79 -51.93 -0.40 0.09 16 44 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -36.65 370.93 -8.29 -44.93 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.49 Total: -3.78 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.93 Total: -2.32 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.51 Total: -46.58 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.28 Total: -15.54 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.65 -8.29 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273271710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.524 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds