Wall clock time and date at job start Tue Mar 31 2020 16:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46767 * 269.99548 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99809 * 3 2 1 6 6 H 1.48493 * 109.46960 * 149.99799 * 3 2 1 7 7 C 1.37877 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99516 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47227 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.46274 * 118.71322 * 90.00028 * 11 10 9 13 13 C 1.52552 * 109.56645 * 163.94647 * 12 11 10 14 14 C 1.53388 * 113.83735 * 176.52616 * 13 12 11 15 15 N 1.48064 * 86.02851 * 91.25356 * 14 13 12 16 16 C 1.46905 * 110.99881 * 137.23034 * 15 14 13 17 17 C 1.50694 * 109.46770 * 70.55030 * 16 15 14 18 18 C 1.38922 * 121.01688 * 89.99990 * 17 16 15 19 19 C 1.38562 * 117.97705 * 180.02562 * 18 17 16 20 20 N 1.31967 * 119.84562 * 0.02562 * 19 18 17 21 21 N 1.28351 * 122.17868 * 359.97438 * 20 19 18 22 22 C 1.31967 * 122.18038 * 359.70240 * 21 20 19 23 23 C 1.48065 * 90.84038 * 24.30826 * 15 14 13 24 24 O 1.42683 * 112.47735 * 45.21244 * 13 12 11 25 25 C 1.43046 * 112.95067 * 295.90172 * 24 13 12 26 26 C 1.33510 * 118.78088 * 270.15368 * 11 10 9 27 27 O 1.21282 * 118.23193 * 3.21215 * 26 11 10 28 28 H 0.97010 * 120.00079 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46439 * 60.00251 * 9 7 2 30 30 H 1.08994 * 109.46900 * 300.00770 * 9 7 2 31 31 H 1.08998 * 109.47018 * 60.00422 * 10 9 7 32 32 H 1.08996 * 109.47146 * 300.00023 * 10 9 7 33 33 H 1.08998 * 109.45376 * 43.91613 * 12 11 10 34 34 H 1.09006 * 109.45764 * 283.97292 * 12 11 10 35 35 H 1.09003 * 113.78313 * 205.53489 * 14 13 12 36 36 H 1.09001 * 113.77973 * 336.97962 * 14 13 12 37 37 H 1.08992 * 109.46747 * 190.55025 * 16 15 14 38 38 H 1.09000 * 109.46822 * 310.55141 * 16 15 14 39 39 H 1.08007 * 121.00887 * 0.02562 * 18 17 16 40 40 H 1.07994 * 120.07753 * 180.02562 * 19 18 17 41 41 H 1.08000 * 120.07399 * 180.29679 * 22 21 20 42 42 H 1.09007 * 113.78333 * 221.42086 * 23 15 14 43 43 H 1.08994 * 113.78809 * 89.97428 * 23 15 14 44 44 H 1.09002 * 109.34998 * 167.53007 * 25 24 13 45 45 H 1.09000 * 109.35269 * 287.23343 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 7 5.4865 -2.6366 0.0009 12 6 6.1893 -2.6367 1.2838 13 6 7.6462 -3.0343 1.0681 14 6 8.4976 -2.9845 2.3431 15 7 8.1242 -4.4058 2.5245 16 6 9.2825 -5.2046 2.9467 17 6 9.6493 -4.8474 4.3640 18 6 9.0916 -5.5259 5.4404 19 6 9.4731 -5.1452 6.7169 20 7 10.3412 -4.1644 6.8778 21 7 10.8564 -3.5375 5.8834 22 6 10.5569 -3.8356 4.6332 23 6 7.8815 -4.5502 1.0710 24 8 8.2358 -2.3631 -0.0444 25 6 7.6242 -2.7065 -1.2911 26 6 6.1292 -2.6334 -1.1692 27 8 5.4704 -2.5707 -2.1856 28 1 -0.4851 0.8401 -0.0004 29 1 3.8744 -0.6801 0.8912 30 1 3.8751 -0.6804 -0.8887 31 1 3.6585 -3.1501 -0.8893 32 1 3.6577 -3.1506 0.8907 33 1 5.7144 -3.3496 1.9578 34 1 6.1461 -1.6394 1.7216 35 1 9.5602 -2.8295 2.1563 36 1 8.0985 -2.3236 3.1125 37 1 9.0325 -6.2641 2.8920 38 1 10.1267 -4.9961 2.2893 39 1 8.3823 -6.3258 5.2868 40 1 9.0610 -5.6500 7.5781 41 1 11.0145 -3.2889 3.8219 42 1 6.9928 -5.1334 0.8295 43 1 8.7613 -4.8595 0.5070 44 1 7.9582 -2.0109 -2.0610 45 1 7.9148 -3.7196 -1.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273271710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:19 Heat of formation + Delta-G solvation = 4.983401 kcal Electronic energy + Delta-G solvation = -28461.797586 eV Core-core repulsion = 24480.590089 eV Total energy + Delta-G solvation = -3981.207497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55027 -41.86147 -40.54835 -38.00915 -37.05506 -35.20956 -34.95035 -33.49551 -32.55548 -31.14318 -29.13329 -28.16193 -27.32432 -26.30410 -25.50645 -25.35424 -23.40409 -22.73980 -21.31468 -19.39845 -19.12288 -18.98426 -18.53470 -17.71000 -17.66673 -17.20727 -17.07659 -16.75641 -16.39847 -16.15400 -15.95821 -15.69193 -15.17433 -15.11999 -14.82907 -14.73598 -14.65120 -14.35711 -14.24353 -13.78962 -13.64368 -13.53971 -13.15996 -12.99144 -12.82546 -12.46499 -12.33940 -12.07696 -11.94076 -11.78249 -11.66698 -11.56993 -11.33768 -11.06466 -10.90650 -10.83604 -10.63951 -10.44019 -9.97637 -9.76879 -8.35973 -6.40236 -0.18397 0.03591 1.28976 1.30318 1.41326 1.45592 1.78299 2.29202 2.38484 2.57920 2.84792 2.99049 3.18630 3.20166 3.26009 3.47151 3.58433 3.61836 3.76811 3.89017 3.98971 4.13561 4.19639 4.24771 4.32260 4.40867 4.43478 4.49904 4.51089 4.55450 4.59155 4.63112 4.72915 4.77856 4.81554 4.93389 4.99476 5.01527 5.17883 5.28433 5.34325 5.39351 5.58875 5.75836 5.80306 6.18068 6.39468 6.65812 7.02956 7.24513 7.75712 8.80313 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002790 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.114257 B =10032.284007 C =11044.691110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.041 0.959 9 C -0.012 4.012 10 C 0.134 3.866 11 N -0.599 5.599 12 C 0.110 3.890 13 C 0.061 3.939 14 C 0.030 3.970 15 N -0.472 5.472 16 C 0.065 3.935 17 C -0.078 4.078 18 C -0.096 4.096 19 C 0.037 3.963 20 N -0.289 5.289 21 N -0.284 5.284 22 C 0.043 3.957 23 C -0.005 4.005 24 O -0.359 6.359 25 C 0.065 3.935 26 C 0.469 3.531 27 O -0.591 6.591 28 H 0.268 0.732 29 H 0.023 0.977 30 H -0.002 1.002 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.179 0.821 40 H 0.198 0.802 41 H 0.187 0.813 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.139 0.861 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.573 -14.776 8.482 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.059 0.941 9 C -0.050 4.050 10 C 0.012 3.988 11 N -0.330 5.330 12 C -0.013 4.013 13 C 0.021 3.979 14 C -0.098 4.098 15 N -0.196 5.196 16 C -0.063 4.063 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.128 4.128 20 N -0.130 5.130 21 N -0.124 5.124 22 C -0.122 4.122 23 C -0.133 4.133 24 O -0.276 6.276 25 C -0.014 4.014 26 C 0.258 3.742 27 O -0.473 6.473 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.197 0.803 40 H 0.215 0.785 41 H 0.204 0.796 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.157 0.843 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 26.653 -13.739 9.549 31.470 hybrid contribution -0.955 0.167 -1.618 1.887 sum 25.698 -13.572 7.930 30.124 Atomic orbital electron populations 1.70036 1.07979 1.28240 1.52181 1.25889 0.95593 1.03133 0.94030 0.85726 0.79497 0.78960 0.78830 1.20117 1.20040 1.17537 1.21270 0.91235 0.93582 1.50787 0.94051 1.19674 0.94529 0.95010 0.95774 1.21310 0.77790 0.97546 1.02133 1.47707 1.07376 1.71245 1.06652 1.21916 0.91086 1.03384 0.84877 1.23428 0.92142 0.93556 0.88816 1.24133 1.00301 0.92023 0.93378 1.68693 1.32072 1.02755 1.16038 1.21674 0.93613 1.00832 0.90169 1.21111 0.95009 0.95046 0.97799 1.22713 0.97903 0.99929 0.91980 1.24836 0.93926 0.94261 0.99753 1.72907 1.08221 1.06327 1.25514 1.72953 1.19747 1.21435 0.98286 1.24622 0.95499 0.95475 0.96644 1.24600 1.04125 0.94787 0.89834 1.88120 1.56777 1.68580 1.14165 1.22782 0.84665 1.05886 0.88048 1.21708 0.93295 0.76189 0.83041 1.90757 1.68332 1.51825 1.36349 0.92280 0.95915 0.98384 0.92372 0.89339 0.87352 0.91233 0.87370 0.88413 0.86710 0.89909 0.80346 0.78537 0.79567 0.88538 0.87180 0.84297 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.01 0.68 5.47 84.66 0.46 1.14 16 3 Si 0.95 46.27 27.47 68.60 1.88 48.15 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 8 H 0.04 2.63 7.99 -2.91 -0.02 2.61 16 9 C -0.01 -0.57 4.36 29.85 0.13 -0.44 16 10 C 0.13 5.43 5.20 86.38 0.45 5.88 16 11 N -0.60 -19.07 2.83 -825.82 -2.34 -21.41 16 12 C 0.11 2.53 5.79 86.27 0.50 3.03 16 13 C 0.06 0.98 1.21 -10.65 -0.01 0.97 16 14 C 0.03 0.34 6.40 86.21 0.55 0.90 16 15 N -0.47 -4.60 6.14 -924.92 -5.68 -10.28 16 16 C 0.07 0.34 5.03 85.55 0.43 0.77 16 17 C -0.08 -0.72 5.15 -19.62 -0.10 -0.82 16 18 C -0.10 -0.83 9.93 22.51 0.22 -0.61 16 19 C 0.04 0.46 11.31 84.75 0.96 1.41 16 20 N -0.29 -5.88 11.51 -57.27 -0.66 -6.53 16 21 N -0.28 -5.81 11.50 -57.27 -0.66 -6.46 16 22 C 0.04 0.55 10.35 84.75 0.88 1.43 16 23 C -0.01 -0.05 6.67 86.21 0.58 0.52 16 24 O -0.36 -6.70 10.66 -148.98 -1.59 -8.29 16 25 C 0.06 1.30 6.67 71.07 0.47 1.78 16 26 C 0.47 15.09 7.56 87.69 0.66 15.75 16 27 O -0.59 -25.17 16.32 -3.04 -0.05 -25.22 16 28 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 29 H 0.02 1.08 7.20 -2.38 -0.02 1.06 16 30 H 0.00 -0.12 7.57 -2.39 -0.02 -0.14 16 31 H 0.06 2.61 7.29 -2.39 -0.02 2.60 16 32 H 0.09 3.23 7.96 -2.39 -0.02 3.21 16 33 H 0.11 2.25 7.88 -2.39 -0.02 2.23 16 34 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.11 0.84 7.21 -2.39 -0.02 0.82 16 36 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 37 H 0.11 0.30 8.11 -2.39 -0.02 0.28 16 38 H 0.08 0.19 7.66 -2.39 -0.02 0.17 16 39 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 40 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.19 1.38 7.55 -2.91 -0.02 1.36 16 42 H 0.10 1.19 8.09 -2.38 -0.02 1.17 16 43 H 0.11 0.66 7.79 -2.39 -0.02 0.64 16 44 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.12 1.63 7.92 -2.39 -0.02 1.61 16 Total: -1.00 -83.55 370.93 -1.42 -84.97 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.94 Total: 4.14 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.43 Total: 0.61 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -9.04 Total: -104.38 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.64 Total: -33.51 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -83.55 -1.42 -84.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273271710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.958 kcal (2) G-P(sol) polarization free energy of solvation -83.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds