Wall clock time and date at job start Tue Mar 31 2020 17:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38814 * 119.99453 * 2 1 4 4 C 1.38565 * 118.04116 * 180.02562 * 3 2 1 5 5 C 1.39480 * 117.90202 * 0.02562 * 4 3 2 6 6 N 1.39044 * 120.15642 * 180.27483 * 5 4 3 7 7 C 1.47604 * 110.99756 * 275.82867 * 6 5 4 8 8 C 1.52872 * 87.78581 * 221.75695 * 7 6 5 9 9 C 1.47594 * 111.00100 * 179.72301 * 6 5 4 10 10 C 1.52457 * 114.29984 * 139.67425 * 8 7 6 11 11 N 1.46285 * 109.56971 * 177.66594 * 10 8 7 12 12 C 1.46504 * 118.72562 * 164.05110 * 11 10 8 13 13 C 1.52994 * 109.47303 * 270.04163 * 12 11 10 14 14 C 1.50701 * 109.47436 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99388 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00140 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99742 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47117 * 60.00311 * 18 16 14 20 20 H 1.48506 * 109.46900 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47297 * 300.00032 * 18 16 14 22 22 C 1.33719 * 122.54792 * 344.09718 * 11 10 8 23 23 O 1.21286 * 118.35884 * 183.27514 * 22 11 10 24 24 C 1.50165 * 123.27876 * 3.25786 * 22 11 10 25 25 O 1.42567 * 114.29043 * 271.61811 * 8 7 6 26 26 N 1.32494 * 119.68495 * 359.97438 * 5 4 3 27 27 N 1.28347 * 122.07203 * 0.02562 * 26 5 4 28 28 H 1.09004 * 109.46666 * 269.97256 * 1 2 3 29 29 H 1.08995 * 109.47430 * 29.96948 * 1 2 3 30 30 H 1.09000 * 109.47584 * 149.97501 * 1 2 3 31 31 H 1.07997 * 120.97855 * 0.05461 * 3 2 1 32 32 H 1.07997 * 121.04550 * 180.02562 * 4 3 2 33 33 H 1.08994 * 113.49837 * 336.48895 * 7 6 5 34 34 H 1.08997 * 113.49801 * 107.02993 * 7 6 5 35 35 H 1.08995 * 113.49716 * 252.96395 * 9 6 5 36 36 H 1.08993 * 113.49937 * 23.50781 * 9 6 5 37 37 H 1.09004 * 109.45155 * 297.70973 * 10 8 7 38 38 H 1.08995 * 109.45285 * 57.65656 * 10 8 7 39 39 H 1.08997 * 109.47073 * 30.04608 * 12 11 10 40 40 H 1.09006 * 109.46740 * 150.04561 * 12 11 10 41 41 H 1.09007 * 109.47468 * 300.00393 * 13 12 11 42 42 H 1.09006 * 109.47131 * 59.99995 * 13 12 11 43 43 H 0.97003 * 119.99704 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.34468 * 222.07905 * 24 22 11 45 45 H 1.08997 * 109.22814 * 102.45250 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5858 1.1550 -0.0005 5 6 4.1961 -0.0992 -0.0016 6 7 5.5828 -0.2012 0.0036 7 6 6.1259 -0.0967 -1.3649 8 6 7.0867 -1.2304 -1.0065 9 6 6.0092 -1.6142 0.0080 10 6 7.2930 -2.2530 -2.1183 11 7 8.2678 -3.2551 -1.6877 12 6 8.3607 -4.5129 -2.4330 13 6 7.4033 -5.5388 -1.8235 14 6 7.4983 -6.8325 -2.5905 15 1 8.1744 -6.9148 -3.4287 16 6 6.7230 -7.9113 -2.2216 17 7 5.9002 -7.8112 -1.2006 18 14 6.8415 -9.5151 -3.1721 19 1 8.2320 -10.0314 -3.1004 20 1 5.9120 -10.5109 -2.5805 21 1 6.4740 -9.2778 -4.5911 22 6 9.0768 -3.0679 -0.6396 23 8 9.8981 -3.9235 -0.3857 24 6 9.0195 -1.8511 0.2386 25 8 8.3131 -0.7974 -0.4227 26 7 3.4482 -1.1929 -0.0016 27 7 2.1657 -1.1415 -0.0010 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6769 2.1466 0.0009 32 1 4.1739 2.0608 -0.0002 33 1 5.4072 -0.3644 -2.1394 34 1 6.6266 0.8511 -1.5625 35 1 6.4116 -1.9437 0.9658 36 1 5.2587 -2.2959 -0.3920 37 1 6.3448 -2.7416 -2.3427 38 1 7.6617 -1.7487 -3.0115 39 1 8.0914 -4.3387 -3.4747 40 1 9.3813 -4.8921 -2.3800 41 1 7.6725 -5.7131 -0.7817 42 1 6.3827 -5.1597 -1.8764 43 1 5.3544 -8.5701 -0.9413 44 1 10.0334 -1.5203 0.4639 45 1 8.5069 -2.1023 1.1671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274753403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:14 Heat of formation + Delta-G solvation = 42.816200 kcal Electronic energy + Delta-G solvation = -28778.080809 eV Core-core repulsion = 24798.513865 eV Total energy + Delta-G solvation = -3979.566944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17439 -40.83306 -39.29500 -36.89768 -35.46520 -34.04830 -33.38101 -32.98584 -30.53884 -29.80846 -28.06437 -27.45404 -26.53745 -25.61525 -24.52100 -23.97849 -22.65272 -21.57637 -20.23853 -18.68123 -17.96644 -17.42554 -17.33211 -16.68903 -16.14153 -15.97472 -15.78709 -15.67882 -15.28281 -14.72863 -14.49448 -14.18578 -14.13537 -14.04965 -13.60700 -13.50799 -13.12158 -12.91618 -12.83254 -12.71540 -12.51860 -12.23919 -12.14882 -11.69881 -11.35955 -11.31540 -10.93758 -10.84353 -10.76775 -10.69026 -10.45266 -10.19581 -9.88816 -9.87228 -9.78561 -9.32468 -9.08447 -8.92610 -8.33331 -8.12045 -5.98177 -4.01788 0.51682 0.56501 2.84594 3.04935 3.14760 3.23952 3.35679 3.39692 3.40176 3.43047 3.81661 4.09576 4.10483 4.25240 4.31295 4.42919 4.49023 4.67235 4.71655 4.86700 4.94441 5.03221 5.15151 5.19029 5.21274 5.26136 5.37238 5.37682 5.43542 5.48738 5.52105 5.55057 5.62617 5.72618 5.85904 5.94604 6.07589 6.52707 6.60085 6.67425 6.83378 6.86908 7.58965 7.70797 7.91580 8.00495 8.36078 8.48427 8.50671 9.04101 9.62025 11.13054 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003491 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.752864 B = 8018.564999 C =10251.187014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.053 3.947 3 C -0.108 4.108 4 C -0.106 4.106 5 C 0.206 3.794 6 N -0.412 5.412 7 C 0.037 3.963 8 C 0.072 3.928 9 C -0.012 4.012 10 C 0.105 3.895 11 N -0.596 5.596 12 C 0.111 3.889 13 C 0.016 3.984 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.481 3.519 23 O -0.539 6.539 24 C 0.051 3.949 25 O -0.336 6.336 26 N -0.261 5.261 27 N -0.222 5.222 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.131 0.869 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 24.480 0.999 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.031 4.031 6 N -0.132 5.132 7 C -0.091 4.091 8 C 0.031 3.969 9 C -0.140 4.140 10 C -0.019 4.019 11 N -0.328 5.328 12 C -0.009 4.009 13 C -0.022 4.022 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.267 3.733 23 O -0.417 6.417 24 C -0.028 4.028 25 O -0.254 6.254 26 N -0.106 5.106 27 N -0.065 5.065 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.039 22.933 1.757 24.053 hybrid contribution -0.429 0.013 -0.774 0.885 sum -7.468 22.946 0.984 24.151 Atomic orbital electron populations 1.20659 0.87364 1.04090 1.03620 1.22927 0.99238 0.90448 0.96700 1.22251 0.94177 0.99904 0.97332 1.22015 0.94984 0.98396 0.98208 1.22157 0.93544 0.91647 0.95791 1.66664 1.03419 1.20797 1.22330 1.23813 0.95122 1.00535 0.89591 1.22359 0.85642 0.94965 0.93982 1.24509 0.97421 0.89976 1.02118 1.21831 0.94825 0.88955 0.96328 1.47668 1.35990 1.18766 1.30415 1.21977 1.02837 0.82067 0.94009 1.19346 0.93577 0.92354 0.96945 1.21026 1.23429 0.96676 1.15016 0.92587 1.24990 0.95246 0.98832 0.95119 1.69964 1.25164 1.31270 1.26576 0.86628 0.77969 0.83198 0.80025 1.20169 1.21262 1.20228 1.20638 0.81538 0.89050 0.82028 1.90756 1.36741 1.44289 1.69906 1.22834 0.99408 0.85460 0.95101 1.88030 1.32049 1.32941 1.72406 1.73240 0.99881 1.26178 1.11266 1.72885 1.00720 1.24684 1.08214 0.89904 0.90334 0.89800 0.83055 0.82875 0.88725 0.87063 0.88276 0.86308 0.88831 0.90482 0.91724 0.90357 0.96081 0.96606 0.92875 0.85179 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.19 36.00 0.37 -0.25 16 2 C 0.05 0.51 6.87 -82.40 -0.57 -0.05 16 3 C -0.11 -0.80 9.86 -39.25 -0.39 -1.18 16 4 C -0.11 -0.91 10.13 -39.00 -0.39 -1.31 16 5 C 0.21 2.46 5.92 -154.77 -0.92 1.54 16 6 N -0.41 -4.84 6.43 -182.55 -1.17 -6.01 16 7 C 0.04 0.36 7.10 -7.26 -0.05 0.30 16 8 C 0.07 0.89 1.22 -91.02 -0.11 0.78 16 9 C -0.01 -0.16 6.58 -7.26 -0.05 -0.21 16 10 C 0.10 1.45 5.90 -4.44 -0.03 1.43 16 11 N -0.60 -10.77 2.84 -174.72 -0.50 -11.27 16 12 C 0.11 2.39 5.26 -4.04 -0.02 2.36 16 13 C 0.02 0.41 5.29 -27.89 -0.15 0.27 16 14 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 C 0.48 8.89 7.58 -11.72 -0.09 8.81 16 23 O -0.54 -12.24 16.28 5.55 0.09 -12.15 16 24 C 0.05 0.70 6.69 35.75 0.24 0.94 16 25 O -0.34 -4.38 10.68 -35.23 -0.38 -4.76 16 26 N -0.26 -3.82 9.39 31.23 0.29 -3.53 16 27 N -0.22 -3.08 11.41 33.61 0.38 -2.70 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.09 0.83 7.85 -51.93 -0.41 0.43 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.41 7.10 -51.93 -0.37 1.04 16 36 H 0.12 1.83 6.44 -51.93 -0.33 1.50 16 37 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 40 H 0.08 1.80 7.19 -51.93 -0.37 1.43 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.09 1.15 7.24 -51.93 -0.38 0.77 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -36.61 373.28 -8.95 -45.56 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.45 Total: -0.93 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.56 Total: -0.24 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.26 Total: -50.12 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.29 Total: -16.91 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.61 -8.95 -45.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.376 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds