Wall clock time and date at job start Tue Mar 31 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38814 * 119.99453 * 2 1 4 4 C 1.38565 * 118.04116 * 180.02562 * 3 2 1 5 5 C 1.39480 * 117.90202 * 0.02562 * 4 3 2 6 6 N 1.39044 * 120.15642 * 180.27483 * 5 4 3 7 7 C 1.47604 * 110.99756 * 275.82867 * 6 5 4 8 8 C 1.52872 * 87.78581 * 221.75695 * 7 6 5 9 9 C 1.47594 * 111.00100 * 179.72301 * 6 5 4 10 10 C 1.52457 * 114.29984 * 139.67425 * 8 7 6 11 11 N 1.46285 * 109.56971 * 177.66594 * 10 8 7 12 12 C 1.46504 * 118.72562 * 164.05110 * 11 10 8 13 13 C 1.52994 * 109.47303 * 270.04163 * 12 11 10 14 14 C 1.50701 * 109.47436 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99388 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00140 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99742 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47117 * 60.00311 * 18 16 14 20 20 H 1.48506 * 109.46900 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47297 * 300.00032 * 18 16 14 22 22 C 1.33719 * 122.54792 * 344.09718 * 11 10 8 23 23 O 1.21286 * 118.35884 * 183.27514 * 22 11 10 24 24 C 1.50165 * 123.27876 * 3.25786 * 22 11 10 25 25 O 1.42567 * 114.29043 * 271.61811 * 8 7 6 26 26 N 1.32494 * 119.68495 * 359.97438 * 5 4 3 27 27 N 1.28347 * 122.07203 * 0.02562 * 26 5 4 28 28 H 1.09004 * 109.46666 * 269.97256 * 1 2 3 29 29 H 1.08995 * 109.47430 * 29.96948 * 1 2 3 30 30 H 1.09000 * 109.47584 * 149.97501 * 1 2 3 31 31 H 1.07997 * 120.97855 * 0.05461 * 3 2 1 32 32 H 1.07997 * 121.04550 * 180.02562 * 4 3 2 33 33 H 1.08994 * 113.49837 * 336.48895 * 7 6 5 34 34 H 1.08997 * 113.49801 * 107.02993 * 7 6 5 35 35 H 1.08995 * 113.49716 * 252.96395 * 9 6 5 36 36 H 1.08993 * 113.49937 * 23.50781 * 9 6 5 37 37 H 1.09004 * 109.45155 * 297.70973 * 10 8 7 38 38 H 1.08995 * 109.45285 * 57.65656 * 10 8 7 39 39 H 1.08997 * 109.47073 * 30.04608 * 12 11 10 40 40 H 1.09006 * 109.46740 * 150.04561 * 12 11 10 41 41 H 1.09007 * 109.47468 * 300.00393 * 13 12 11 42 42 H 1.09006 * 109.47131 * 59.99995 * 13 12 11 43 43 H 0.97003 * 119.99704 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.34468 * 222.07905 * 24 22 11 45 45 H 1.08997 * 109.22814 * 102.45250 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5858 1.1550 -0.0005 5 6 4.1961 -0.0992 -0.0016 6 7 5.5828 -0.2012 0.0036 7 6 6.1259 -0.0967 -1.3649 8 6 7.0867 -1.2304 -1.0065 9 6 6.0092 -1.6142 0.0080 10 6 7.2930 -2.2530 -2.1183 11 7 8.2678 -3.2551 -1.6877 12 6 8.3607 -4.5129 -2.4330 13 6 7.4033 -5.5388 -1.8235 14 6 7.4983 -6.8325 -2.5905 15 1 8.1744 -6.9148 -3.4287 16 6 6.7230 -7.9113 -2.2216 17 7 5.9002 -7.8112 -1.2006 18 14 6.8415 -9.5151 -3.1721 19 1 8.2320 -10.0314 -3.1004 20 1 5.9120 -10.5109 -2.5805 21 1 6.4740 -9.2778 -4.5911 22 6 9.0768 -3.0679 -0.6396 23 8 9.8981 -3.9235 -0.3857 24 6 9.0195 -1.8511 0.2386 25 8 8.3131 -0.7974 -0.4227 26 7 3.4482 -1.1929 -0.0016 27 7 2.1657 -1.1415 -0.0010 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6769 2.1466 0.0009 32 1 4.1739 2.0608 -0.0002 33 1 5.4072 -0.3644 -2.1394 34 1 6.6266 0.8511 -1.5625 35 1 6.4116 -1.9437 0.9658 36 1 5.2587 -2.2959 -0.3920 37 1 6.3448 -2.7416 -2.3427 38 1 7.6617 -1.7487 -3.0115 39 1 8.0914 -4.3387 -3.4747 40 1 9.3813 -4.8921 -2.3800 41 1 7.6725 -5.7131 -0.7817 42 1 6.3827 -5.1597 -1.8764 43 1 5.3544 -8.5701 -0.9413 44 1 10.0334 -1.5203 0.4639 45 1 8.5069 -2.1023 1.1671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274753403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:13 Heat of formation + Delta-G solvation = 14.661979 kcal Electronic energy + Delta-G solvation = -28779.301667 eV Core-core repulsion = 24798.513865 eV Total energy + Delta-G solvation = -3980.787802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.10858 -41.84156 -40.56013 -38.03685 -37.05850 -35.16334 -34.76475 -34.12553 -32.19538 -31.01553 -29.07452 -28.67113 -27.60237 -26.61923 -26.34178 -24.75860 -23.69297 -23.13906 -21.59728 -19.90656 -18.92117 -18.72054 -18.52321 -18.26777 -17.43212 -17.15758 -16.94768 -16.57283 -16.52523 -16.22873 -15.76984 -15.42900 -15.09583 -15.04451 -14.84166 -14.58620 -14.29517 -14.23047 -14.11110 -13.84392 -13.51649 -13.46488 -13.32300 -13.07271 -12.84683 -12.81014 -12.64535 -12.23735 -12.01414 -11.93023 -11.80928 -11.55246 -11.49033 -11.30462 -11.12650 -10.60500 -10.56829 -10.49726 -9.91235 -9.69856 -8.24062 -6.37341 -0.17992 -0.14819 1.37005 1.41825 1.42385 1.49874 1.81174 2.14368 2.29456 2.39284 2.53336 2.95876 3.09335 3.10766 3.17145 3.42209 3.56065 3.65715 3.71369 3.98755 4.07608 4.08704 4.14907 4.22256 4.33324 4.34167 4.42090 4.43018 4.50286 4.58566 4.62670 4.65002 4.69471 4.73803 4.78776 4.88315 5.01259 5.10054 5.21167 5.32765 5.41012 5.52294 5.65600 5.75387 5.78394 6.13574 6.37545 6.77512 7.01251 7.32475 7.69412 8.87758 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003491 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.752864 B = 8018.564999 C =10251.187014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.048 3.952 3 C -0.092 4.092 4 C -0.101 4.101 5 C 0.189 3.811 6 N -0.408 5.408 7 C 0.052 3.948 8 C 0.074 3.926 9 C -0.017 4.017 10 C 0.101 3.899 11 N -0.599 5.599 12 C 0.127 3.873 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.259 1.259 22 C 0.472 3.528 23 O -0.590 6.590 24 C 0.063 3.937 25 O -0.326 6.326 26 N -0.312 5.312 27 N -0.277 5.277 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.201 0.799 32 H 0.187 0.813 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.060 0.940 41 H -0.027 1.027 42 H -0.003 1.003 43 H 0.264 0.736 44 H 0.158 0.842 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 27.726 -0.468 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.131 4.131 5 C -0.050 4.050 6 N -0.128 5.128 7 C -0.075 4.075 8 C 0.033 3.967 9 C -0.146 4.146 10 C -0.022 4.022 11 N -0.330 5.330 12 C 0.005 3.995 13 C -0.009 4.009 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.184 1.184 22 C 0.260 3.740 23 O -0.472 6.472 24 C -0.016 4.016 25 O -0.244 6.244 26 N -0.155 5.155 27 N -0.119 5.119 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.218 0.782 32 H 0.204 0.796 33 H 0.122 0.878 34 H 0.160 0.840 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.078 0.922 41 H -0.008 1.008 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.175 0.825 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.691 26.213 0.272 27.320 hybrid contribution -0.350 -0.928 -0.265 1.026 sum -8.041 25.286 0.008 26.534 Atomic orbital electron populations 1.20799 0.85099 1.05135 1.04541 1.23576 1.00825 0.90459 0.95067 1.22770 0.93751 1.00791 0.94707 1.22403 0.95855 0.97932 0.96882 1.22376 0.93317 0.92655 0.96624 1.66716 1.03838 1.18662 1.23587 1.23871 0.94008 1.00610 0.88971 1.22387 0.85414 0.95924 0.93003 1.24334 0.97542 0.91190 1.01542 1.22118 0.93503 0.88359 0.98250 1.47719 1.36700 1.18385 1.30185 1.21522 1.00151 0.82614 0.95217 1.19129 0.93653 0.93736 0.94403 1.21508 1.23613 0.97752 1.15519 0.91517 1.26028 0.94598 1.03080 0.96056 1.70125 1.26124 1.32566 1.28391 0.85430 0.78199 0.77922 0.79077 1.19405 1.20859 1.18353 1.21584 0.80518 0.89994 0.81877 1.90723 1.38936 1.46415 1.71122 1.22813 1.01196 0.83654 0.93889 1.88050 1.31988 1.32070 1.72251 1.73103 1.00714 1.28252 1.13421 1.72770 1.00778 1.27424 1.10880 0.88892 0.86870 0.91156 0.78219 0.79620 0.87813 0.83955 0.89907 0.88918 0.89731 0.87112 0.89112 0.92167 1.00850 0.98514 0.92764 0.82481 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.19 71.23 0.73 -0.29 16 2 C 0.05 0.87 6.87 42.70 0.29 1.17 16 3 C -0.09 -1.04 9.86 22.49 0.22 -0.81 16 4 C -0.10 -1.45 10.13 22.65 0.23 -1.22 16 5 C 0.19 4.39 5.92 133.11 0.79 5.18 16 6 N -0.41 -9.18 6.43 -732.23 -4.71 -13.89 16 7 C 0.05 0.89 7.10 83.69 0.59 1.49 16 8 C 0.07 1.77 1.22 -11.05 -0.01 1.76 16 9 C -0.02 -0.48 6.58 83.70 0.55 0.07 16 10 C 0.10 2.74 5.90 86.24 0.51 3.25 16 11 N -0.60 -22.17 2.84 -825.68 -2.34 -24.51 16 12 C 0.13 5.62 5.26 86.38 0.45 6.07 16 13 C 0.03 1.61 5.29 29.85 0.16 1.77 16 14 C -0.55 -32.28 9.11 25.60 0.23 -32.04 16 15 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -59.50 13.29 21.45 0.28 -59.21 16 18 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 C 0.47 17.93 7.58 87.65 0.66 18.59 16 23 O -0.59 -28.07 16.28 -3.05 -0.05 -28.12 16 24 C 0.06 1.71 6.69 71.07 0.48 2.18 16 25 O -0.33 -7.89 10.68 -148.98 -1.59 -9.48 16 26 N -0.31 -9.58 9.39 -55.10 -0.52 -10.10 16 27 N -0.28 -7.99 11.41 -47.57 -0.54 -8.53 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.38 8.09 -2.39 -0.02 0.37 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 32 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.10 1.63 7.85 -2.39 -0.02 1.61 16 34 H 0.14 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.54 7.10 -2.39 -0.02 2.52 16 36 H 0.09 3.15 6.44 -2.39 -0.02 3.13 16 37 H 0.08 2.48 7.86 -2.38 -0.02 2.46 16 38 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 40 H 0.06 2.88 7.19 -2.38 -0.02 2.87 16 41 H -0.03 -1.75 8.14 -2.38 -0.02 -1.77 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 44 H 0.16 3.42 8.14 -2.38 -0.02 3.40 16 45 H 0.10 2.51 7.24 -2.39 -0.02 2.49 16 Total: -1.00 -86.80 373.28 -0.09 -86.89 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.00 Total: 11.54 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.35 Total: 7.64 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -7.83 Total: -116.25 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.64 Total: -37.60 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -86.80 -0.09 -86.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.550 kcal (2) G-P(sol) polarization free energy of solvation -86.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds