Wall clock time and date at job start Tue Mar 31 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38808 * 119.99684 * 2 1 4 4 C 1.38572 * 118.04004 * 179.70370 * 3 2 1 5 5 C 1.39483 * 117.90113 * 0.56943 * 4 3 2 6 6 N 1.39040 * 120.15681 * 179.71757 * 5 4 3 7 7 C 1.48043 * 111.00102 * 179.72600 * 6 5 4 8 8 C 1.53483 * 86.17962 * 222.76037 * 7 6 5 9 9 C 1.48280 * 111.08021 * 80.35566 * 6 5 4 10 10 C 1.52771 * 113.55118 * 137.71044 * 8 7 6 11 11 O 1.43379 * 108.26048 * 176.79051 * 10 8 7 12 12 C 1.42820 * 113.33607 * 294.36843 * 11 10 8 13 13 C 1.50271 * 110.49464 * 51.31287 * 12 11 10 14 14 O 1.21285 * 118.97197 * 161.60590 * 13 12 11 15 15 N 1.34271 * 122.05745 * 341.60191 * 13 12 11 16 16 C 1.46500 * 119.37791 * 181.96413 * 15 13 12 17 17 C 1.53001 * 109.47360 * 270.00717 * 16 15 13 18 18 C 1.50701 * 109.47039 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99993 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99721 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47053 * 90.00154 * 22 20 18 24 24 H 1.48506 * 109.46819 * 210.00025 * 22 20 18 25 25 H 1.48498 * 109.47062 * 329.99634 * 22 20 18 26 26 N 1.32491 * 119.68321 * 359.44123 * 5 4 3 27 27 N 1.28355 * 122.07327 * 0.27624 * 26 5 4 28 28 H 1.08996 * 109.47208 * 269.98023 * 1 2 3 29 29 H 1.09005 * 109.46594 * 29.98040 * 1 2 3 30 30 H 1.09000 * 109.47157 * 149.97196 * 1 2 3 31 31 H 1.08001 * 120.98435 * 0.02562 * 3 2 1 32 32 H 1.07999 * 121.04824 * 180.29332 * 4 3 2 33 33 H 1.09002 * 113.78163 * 108.41829 * 7 6 5 34 34 H 1.08994 * 113.77998 * 337.10163 * 7 6 5 35 35 H 1.09004 * 113.67416 * 22.87276 * 9 6 5 36 36 H 1.08997 * 113.95199 * 251.49896 * 9 6 5 37 37 H 1.09003 * 109.70391 * 296.48737 * 10 8 7 38 38 H 1.09004 * 109.69889 * 57.09716 * 10 8 7 39 39 H 1.09000 * 109.29828 * 171.62841 * 12 11 10 40 40 H 1.09005 * 109.29907 * 290.99750 * 12 11 10 41 41 H 1.09001 * 109.47202 * 30.00846 * 16 15 13 42 42 H 1.08999 * 109.47101 * 150.00619 * 16 15 13 43 43 H 1.09001 * 109.46681 * 299.99337 * 17 16 15 44 44 H 1.08993 * 109.47488 * 59.99956 * 17 16 15 45 45 H 0.97005 * 120.00060 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2021 0.0000 4 6 3.5859 1.1548 0.0063 5 6 4.1962 -0.0994 0.0000 6 7 5.5828 -0.2015 0.0001 7 6 6.0105 -1.6188 -0.0005 8 6 7.0573 -1.1965 1.0394 9 6 6.1312 -0.0165 1.3653 10 6 7.2083 -2.1887 2.1913 11 8 8.2595 -1.7248 3.0489 12 6 9.5443 -1.7350 2.4254 13 6 9.4927 -1.0244 1.1023 14 8 10.5285 -0.6437 0.5991 15 7 8.3357 -0.7979 0.4597 16 6 8.3572 -0.1380 -0.8481 17 6 8.2573 1.3767 -0.6567 18 6 8.2788 2.0554 -2.0021 19 1 8.3565 1.4655 -2.9034 20 6 8.1994 3.4296 -2.0823 21 7 8.1044 4.1479 -0.9848 22 14 8.2268 4.2709 -3.7499 23 1 6.8381 4.4094 -4.2573 24 1 8.8412 5.6162 -3.6155 25 1 9.0230 3.4561 -4.7024 26 7 3.4482 -1.1930 -0.0004 27 7 2.1657 -1.1415 -0.0004 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6771 2.1466 0.0004 32 1 4.1742 2.0605 0.0114 33 1 6.4392 -1.9482 -0.9470 34 1 5.2578 -2.3051 0.3872 35 1 5.4130 -0.2272 2.1577 36 1 6.6561 0.9281 1.5071 37 1 6.2750 -2.2461 2.7515 38 1 7.4624 -3.1729 1.7975 39 1 10.2637 -1.2358 3.0746 40 1 9.8605 -2.7663 2.2685 41 1 9.2882 -0.3788 -1.3613 42 1 7.5134 -0.4854 -1.4442 43 1 7.3262 1.6174 -0.1437 44 1 9.1011 1.7241 -0.0606 45 1 8.0489 5.1147 -1.0412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274753731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:17 Heat of formation + Delta-G solvation = 43.695127 kcal Electronic energy + Delta-G solvation = -29742.862215 eV Core-core repulsion = 25763.333384 eV Total energy + Delta-G solvation = -3979.528831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93108 -40.66651 -38.90277 -37.44348 -35.05405 -33.71627 -33.21734 -32.51620 -30.42622 -29.66595 -28.20607 -27.11470 -26.65778 -25.44357 -24.25429 -23.67938 -22.35243 -21.15142 -20.88144 -18.27002 -17.76728 -17.50946 -17.25668 -16.66488 -16.04523 -15.75772 -15.54694 -15.33079 -15.29567 -14.55515 -14.39644 -14.33677 -14.16521 -13.67144 -13.55785 -13.24540 -13.08291 -12.91838 -12.58307 -12.46103 -12.25127 -12.11576 -11.93573 -11.54299 -11.26062 -11.03236 -11.02171 -10.89902 -10.68611 -10.51851 -10.32754 -10.11392 -9.82452 -9.69174 -9.58124 -9.28651 -8.95590 -8.54889 -8.28052 -8.13167 -5.95997 -3.96004 0.79928 0.87385 2.79353 3.08064 3.30466 3.32965 3.39552 3.44029 3.54040 3.64094 4.03701 4.29418 4.35559 4.44387 4.49785 4.53127 4.61827 4.68866 4.94440 4.98820 5.11748 5.21875 5.25743 5.29546 5.31904 5.34348 5.40958 5.43011 5.55347 5.58498 5.70423 5.77244 5.85731 5.96656 6.12900 6.23060 6.26379 6.58556 6.63690 6.85527 6.99703 7.00637 7.66462 7.76550 8.00519 8.07009 8.38869 8.50795 8.69781 9.09522 9.65904 11.15599 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.005706 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.571632 B = 4905.602135 C = 8019.476508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.046 3.954 3 C -0.107 4.107 4 C -0.100 4.100 5 C 0.221 3.779 6 N -0.402 5.402 7 C 0.009 3.991 8 C 0.111 3.889 9 C 0.016 3.984 10 C 0.065 3.935 11 O -0.367 6.367 12 C 0.048 3.952 13 C 0.482 3.518 14 O -0.530 6.530 15 N -0.573 5.573 16 C 0.117 3.883 17 C 0.019 3.981 18 C -0.508 4.508 19 H 0.052 0.948 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.279 5.279 27 N -0.233 5.233 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.013 0.987 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -11.508 8.170 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.130 4.130 5 C -0.016 4.016 6 N -0.121 5.121 7 C -0.120 4.120 8 C 0.022 3.978 9 C -0.111 4.111 10 C -0.013 4.013 11 O -0.285 6.285 12 C -0.032 4.032 13 C 0.269 3.731 14 O -0.407 6.407 15 N -0.305 5.305 16 C -0.003 4.003 17 C -0.019 4.019 18 C -0.547 4.547 19 H 0.071 0.929 20 C -0.141 4.141 21 N -0.536 5.536 22 Si 0.716 3.284 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.199 1.199 26 N -0.125 5.125 27 N -0.075 5.075 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.031 0.969 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.582 -12.284 7.608 18.518 hybrid contribution -0.261 1.902 -0.848 2.099 sum -11.843 -10.382 6.760 17.139 Atomic orbital electron populations 1.20604 0.87706 1.03786 1.03262 1.22751 0.98862 0.90543 0.97924 1.22241 0.94263 0.99795 0.97318 1.22215 0.94965 0.99199 0.96611 1.22143 0.93572 0.91462 0.94417 1.66341 1.02797 1.18419 1.24546 1.24356 0.95913 0.90871 1.00880 1.22142 0.85835 0.95325 0.94526 1.24632 0.96129 1.02342 0.88023 1.22956 0.92473 0.95503 0.90390 1.88146 1.15575 1.86684 1.38112 1.22810 0.86713 1.01208 0.92436 1.20940 0.83971 0.80544 0.87620 1.90768 1.32050 1.50760 1.67137 1.47536 1.03352 1.58158 1.21429 1.21993 1.01405 0.96472 0.80446 1.19380 0.97663 0.87533 0.97329 1.21068 1.49611 0.91492 0.92516 0.92943 1.24914 0.95536 0.97482 0.96163 1.69964 1.51070 1.05641 1.26876 0.86657 0.77993 0.78961 0.84746 1.20874 1.21315 1.19915 1.73029 0.99756 1.26391 1.13288 1.72690 1.00940 1.24838 1.09075 0.90219 0.90473 0.90226 0.83246 0.82286 0.87782 0.87105 0.90039 0.86415 0.86751 0.91181 0.85387 0.89732 0.91365 0.90723 0.95040 0.96851 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.19 36.01 0.37 -0.35 16 2 C 0.05 0.53 6.87 -82.40 -0.57 -0.03 16 3 C -0.11 -1.21 9.86 -39.25 -0.39 -1.60 16 4 C -0.10 -1.40 10.07 -38.99 -0.39 -1.79 16 5 C 0.22 3.37 5.97 -154.77 -0.92 2.44 16 6 N -0.40 -6.37 4.47 -177.43 -0.79 -7.17 16 7 C 0.01 0.12 6.22 -2.95 -0.02 0.10 16 8 C 0.11 1.53 1.56 -134.80 -0.21 1.32 16 9 C 0.02 0.24 6.40 -2.81 -0.02 0.22 16 10 C 0.06 0.69 6.09 37.04 0.23 0.91 16 11 O -0.37 -4.60 10.84 -35.23 -0.38 -4.98 16 12 C 0.05 0.61 6.94 35.80 0.25 0.86 16 13 C 0.48 8.61 7.64 -11.42 -0.09 8.52 16 14 O -0.53 -11.78 16.48 5.55 0.09 -11.69 16 15 N -0.57 -10.08 2.67 -161.81 -0.43 -10.51 16 16 C 0.12 2.48 4.49 -4.04 -0.02 2.46 16 17 C 0.02 0.48 5.02 -27.88 -0.14 0.34 16 18 C -0.51 -14.40 9.11 -34.44 -0.31 -14.71 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 N -0.28 -4.20 9.40 31.23 0.29 -3.91 16 27 N -0.23 -3.32 11.41 33.61 0.38 -2.94 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.10 1.46 6.92 -51.93 -0.36 1.10 16 34 H 0.11 1.34 6.63 -51.93 -0.34 0.99 16 35 H 0.08 1.00 7.66 -51.93 -0.40 0.60 16 36 H 0.12 2.06 6.71 -51.93 -0.35 1.71 16 37 H 0.11 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.57 7.35 -51.93 -0.38 1.19 16 42 H 0.07 1.51 5.57 -51.93 -0.29 1.23 16 43 H 0.03 0.81 5.36 -51.93 -0.28 0.54 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -35.15 364.45 -8.11 -43.26 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.15 Total: 1.22 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.33 Total: 0.31 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.19 Total: -50.50 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.29 Total: -16.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.15 -8.11 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.953 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds