Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38808 * 119.99684 * 2 1 4 4 C 1.38572 * 118.04004 * 179.70370 * 3 2 1 5 5 C 1.39483 * 117.90113 * 0.56943 * 4 3 2 6 6 N 1.39040 * 120.15681 * 179.71757 * 5 4 3 7 7 C 1.48043 * 111.00102 * 179.72600 * 6 5 4 8 8 C 1.53483 * 86.17962 * 222.76037 * 7 6 5 9 9 C 1.48280 * 111.08021 * 80.35566 * 6 5 4 10 10 C 1.52771 * 113.55118 * 137.71044 * 8 7 6 11 11 O 1.43379 * 108.26048 * 176.79051 * 10 8 7 12 12 C 1.42820 * 113.33607 * 294.36843 * 11 10 8 13 13 C 1.50271 * 110.49464 * 51.31287 * 12 11 10 14 14 O 1.21285 * 118.97197 * 161.60590 * 13 12 11 15 15 N 1.34271 * 122.05745 * 341.60191 * 13 12 11 16 16 C 1.46500 * 119.37791 * 181.96413 * 15 13 12 17 17 C 1.53001 * 109.47360 * 270.00717 * 16 15 13 18 18 C 1.50701 * 109.47039 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99993 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99721 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47053 * 90.00154 * 22 20 18 24 24 H 1.48506 * 109.46819 * 210.00025 * 22 20 18 25 25 H 1.48498 * 109.47062 * 329.99634 * 22 20 18 26 26 N 1.32491 * 119.68321 * 359.44123 * 5 4 3 27 27 N 1.28355 * 122.07327 * 0.27624 * 26 5 4 28 28 H 1.08996 * 109.47208 * 269.98023 * 1 2 3 29 29 H 1.09005 * 109.46594 * 29.98040 * 1 2 3 30 30 H 1.09000 * 109.47157 * 149.97196 * 1 2 3 31 31 H 1.08001 * 120.98435 * 0.02562 * 3 2 1 32 32 H 1.07999 * 121.04824 * 180.29332 * 4 3 2 33 33 H 1.09002 * 113.78163 * 108.41829 * 7 6 5 34 34 H 1.08994 * 113.77998 * 337.10163 * 7 6 5 35 35 H 1.09004 * 113.67416 * 22.87276 * 9 6 5 36 36 H 1.08997 * 113.95199 * 251.49896 * 9 6 5 37 37 H 1.09003 * 109.70391 * 296.48737 * 10 8 7 38 38 H 1.09004 * 109.69889 * 57.09716 * 10 8 7 39 39 H 1.09000 * 109.29828 * 171.62841 * 12 11 10 40 40 H 1.09005 * 109.29907 * 290.99750 * 12 11 10 41 41 H 1.09001 * 109.47202 * 30.00846 * 16 15 13 42 42 H 1.08999 * 109.47101 * 150.00619 * 16 15 13 43 43 H 1.09001 * 109.46681 * 299.99337 * 17 16 15 44 44 H 1.08993 * 109.47488 * 59.99956 * 17 16 15 45 45 H 0.97005 * 120.00060 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2021 0.0000 4 6 3.5859 1.1548 0.0063 5 6 4.1962 -0.0994 0.0000 6 7 5.5828 -0.2015 0.0001 7 6 6.0105 -1.6188 -0.0005 8 6 7.0573 -1.1965 1.0394 9 6 6.1312 -0.0165 1.3653 10 6 7.2083 -2.1887 2.1913 11 8 8.2595 -1.7248 3.0489 12 6 9.5443 -1.7350 2.4254 13 6 9.4927 -1.0244 1.1023 14 8 10.5285 -0.6437 0.5991 15 7 8.3357 -0.7979 0.4597 16 6 8.3572 -0.1380 -0.8481 17 6 8.2573 1.3767 -0.6567 18 6 8.2788 2.0554 -2.0021 19 1 8.3565 1.4655 -2.9034 20 6 8.1994 3.4296 -2.0823 21 7 8.1044 4.1479 -0.9848 22 14 8.2268 4.2709 -3.7499 23 1 6.8381 4.4094 -4.2573 24 1 8.8412 5.6162 -3.6155 25 1 9.0230 3.4561 -4.7024 26 7 3.4482 -1.1930 -0.0004 27 7 2.1657 -1.1415 -0.0004 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6771 2.1466 0.0004 32 1 4.1742 2.0605 0.0114 33 1 6.4392 -1.9482 -0.9470 34 1 5.2578 -2.3051 0.3872 35 1 5.4130 -0.2272 2.1577 36 1 6.6561 0.9281 1.5071 37 1 6.2750 -2.2461 2.7515 38 1 7.4624 -3.1729 1.7975 39 1 10.2637 -1.2358 3.0746 40 1 9.8605 -2.7663 2.2685 41 1 9.2882 -0.3788 -1.3613 42 1 7.5134 -0.4854 -1.4442 43 1 7.3262 1.6174 -0.1437 44 1 9.1011 1.7241 -0.0606 45 1 8.0489 5.1147 -1.0412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274753731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = 18.047121 kcal Electronic energy + Delta-G solvation = -29743.974396 eV Core-core repulsion = 25763.333384 eV Total energy + Delta-G solvation = -3980.641012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.07243 -41.78208 -40.16572 -38.59332 -36.54156 -35.13922 -34.60983 -33.86105 -31.98172 -30.97579 -29.18746 -28.39915 -27.83021 -26.62839 -25.91537 -24.72997 -23.38276 -22.93354 -22.22802 -19.51827 -19.02083 -18.57999 -18.46821 -18.35749 -17.52273 -16.94197 -16.59647 -16.57377 -16.42002 -16.37243 -15.71001 -15.46937 -15.23089 -14.92948 -14.74720 -14.47747 -14.33396 -14.15354 -13.97695 -13.67639 -13.42841 -13.31326 -13.07071 -12.98148 -12.82859 -12.69183 -12.57321 -12.25810 -12.04735 -11.86026 -11.70382 -11.53498 -11.36998 -11.31237 -11.08854 -10.59431 -10.51755 -10.41132 -9.77103 -9.57391 -8.18991 -6.27866 -0.20034 -0.14073 1.35058 1.37410 1.40460 1.48159 1.77717 2.26044 2.40091 2.51906 2.63762 3.03753 3.14557 3.19858 3.33403 3.37699 3.53896 3.66060 3.70086 3.98768 4.07515 4.09650 4.21238 4.31515 4.33819 4.48301 4.49536 4.54057 4.60397 4.65791 4.70711 4.71782 4.75650 4.81121 4.91523 5.01964 5.05102 5.19803 5.24435 5.36042 5.52214 5.68276 5.75345 5.90334 5.91935 6.24434 6.42905 6.85069 7.03527 7.38766 7.66990 8.92852 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.005706 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.571632 B = 4905.602135 C = 8019.476508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.050 3.950 3 C -0.092 4.092 4 C -0.124 4.124 5 C 0.208 3.792 6 N -0.434 5.434 7 C 0.021 3.979 8 C 0.109 3.891 9 C 0.022 3.978 10 C 0.068 3.932 11 O -0.371 6.371 12 C 0.061 3.939 13 C 0.472 3.528 14 O -0.586 6.586 15 N -0.576 5.576 16 C 0.137 3.863 17 C 0.036 3.964 18 C -0.533 4.533 19 H 0.052 0.948 20 C 0.008 3.992 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.269 1.269 26 N -0.289 5.289 27 N -0.256 5.256 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.185 0.815 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.026 0.974 44 H -0.038 1.038 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 -12.765 8.552 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.029 4.029 6 N -0.154 5.154 7 C -0.107 4.107 8 C 0.021 3.979 9 C -0.106 4.106 10 C -0.009 4.009 11 O -0.289 6.289 12 C -0.018 4.018 13 C 0.261 3.739 14 O -0.466 6.466 15 N -0.306 5.306 16 C 0.015 3.985 17 C -0.002 4.002 18 C -0.571 4.571 19 H 0.070 0.930 20 C -0.190 4.190 21 N -0.569 5.569 22 Si 0.783 3.217 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.194 1.194 26 N -0.134 5.134 27 N -0.098 5.098 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.203 0.797 32 H 0.160 0.840 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.044 0.956 44 H -0.019 1.019 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.148 -13.578 8.013 21.183 hybrid contribution 0.405 2.352 -0.954 2.571 sum -13.743 -11.225 7.059 19.098 Atomic orbital electron populations 1.20765 0.84528 1.05052 1.04776 1.23393 1.00790 0.89696 0.95873 1.22635 0.93046 1.01408 0.94996 1.22245 0.96390 0.98360 0.98385 1.22140 0.93271 0.92022 0.95496 1.66310 1.03799 1.19966 1.25347 1.24308 0.95832 0.90226 1.00345 1.22440 0.83855 0.95801 0.95801 1.24521 0.96658 1.00726 0.88656 1.23224 0.93308 0.95286 0.89117 1.88157 1.15662 1.86929 1.38130 1.22818 0.87422 1.02459 0.89126 1.22080 0.82947 0.79800 0.89040 1.90734 1.33937 1.53126 1.68848 1.47525 1.05335 1.57492 1.20287 1.21417 1.00439 0.93827 0.82807 1.19133 0.94991 0.90548 0.95531 1.21460 1.49930 0.92318 0.93417 0.92961 1.25791 0.94839 0.98156 1.00178 1.70095 1.51562 1.06030 1.29204 0.85566 0.78615 0.77695 0.79870 1.19433 1.20773 1.19389 1.72959 1.00308 1.26286 1.13876 1.72634 1.00675 1.26360 1.10155 0.88384 0.88075 0.90115 0.79742 0.84005 0.88685 0.85076 0.87397 0.90397 0.83782 0.88282 0.84372 0.85920 0.93739 0.89692 0.95569 1.01938 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.19 71.24 0.73 -0.35 16 2 C 0.05 1.03 6.87 42.70 0.29 1.33 16 3 C -0.09 -1.91 9.86 22.49 0.22 -1.69 16 4 C -0.12 -3.49 10.07 22.65 0.23 -3.26 16 5 C 0.21 6.34 5.97 133.11 0.79 7.13 16 6 N -0.43 -14.09 4.47 -715.26 -3.20 -17.29 16 7 C 0.02 0.56 6.22 86.24 0.54 1.10 16 8 C 0.11 2.94 1.56 5.03 0.01 2.95 16 9 C 0.02 0.65 6.40 86.20 0.55 1.20 16 10 C 0.07 1.24 6.09 71.91 0.44 1.68 16 11 O -0.37 -8.32 10.84 -148.98 -1.61 -9.93 16 12 C 0.06 1.45 6.94 71.10 0.49 1.95 16 13 C 0.47 17.22 7.64 87.60 0.67 17.89 16 14 O -0.59 -27.40 16.48 -3.04 -0.05 -27.45 16 15 N -0.58 -20.90 2.67 -784.51 -2.09 -23.00 16 16 C 0.14 6.16 4.49 86.38 0.39 6.55 16 17 C 0.04 1.97 5.02 29.85 0.15 2.12 16 18 C -0.53 -31.54 9.11 25.60 0.23 -31.30 16 19 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 20 C 0.01 0.48 5.46 84.66 0.46 0.95 16 21 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 22 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 26 N -0.29 -8.43 9.40 -55.10 -0.52 -8.95 16 27 N -0.26 -6.90 11.41 -47.57 -0.54 -7.44 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.72 8.09 -2.38 -0.02 0.70 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.09 2.66 6.92 -2.39 -0.02 2.65 16 34 H 0.13 2.92 6.63 -2.39 -0.02 2.90 16 35 H 0.11 2.56 7.66 -2.39 -0.02 2.54 16 36 H 0.08 2.94 6.71 -2.39 -0.02 2.92 16 37 H 0.14 1.85 7.86 -2.39 -0.02 1.83 16 38 H 0.10 1.32 8.13 -2.38 -0.02 1.30 16 39 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.04 2.19 7.35 -2.39 -0.02 2.17 16 42 H 0.08 3.62 5.57 -2.39 -0.01 3.60 16 43 H 0.03 1.46 5.36 -2.39 -0.01 1.44 16 44 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 45 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -81.83 364.45 1.50 -80.33 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.02 Total: 14.81 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.19 Total: 8.24 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -6.07 Total: -113.71 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.67 Total: -37.39 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -81.83 1.50 -80.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274753731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.373 kcal (2) G-P(sol) polarization free energy of solvation -81.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds