Wall clock time and date at job start Tue Mar 31 2020 16:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29810 * 126.33811 * 2 1 4 4 O 1.41323 * 109.73115 * 179.97438 * 3 2 1 5 5 C 1.34834 * 109.41758 * 0.02562 * 4 3 2 6 6 N 1.32459 * 133.09554 * 179.97438 * 5 4 3 7 7 C 1.31561 * 122.02807 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.16929 * 180.02562 * 7 6 5 9 9 C 1.38597 * 121.65144 * 359.66790 * 7 6 5 10 10 C 1.39436 * 119.20658 * 0.62483 * 9 7 6 11 11 C 1.48000 * 121.10728 * 179.70680 * 10 9 7 12 12 O 1.21523 * 120.00176 * 139.08956 * 11 10 9 13 13 N 1.34777 * 119.99627 * 319.36297 * 11 10 9 14 14 C 1.46502 * 119.99753 * 179.72600 * 13 11 10 15 15 H 1.08998 * 109.47044 * 324.99530 * 14 13 11 16 16 C 1.53004 * 109.47432 * 85.00060 * 14 13 11 17 17 C 1.53002 * 109.47163 * 204.99827 * 14 13 11 18 18 N 1.46500 * 109.46845 * 54.99829 * 17 14 13 19 19 C 1.46501 * 120.00431 * 269.99858 * 18 17 14 20 20 C 1.36936 * 120.00105 * 90.00184 * 18 17 14 21 21 H 1.08004 * 120.00048 * 28.57121 * 20 18 17 22 22 C 1.38814 * 120.00483 * 208.56706 * 20 18 17 23 23 N 1.31626 * 119.99514 * 357.62826 * 22 20 18 24 24 Si 1.86794 * 120.00361 * 177.62335 * 22 20 18 25 25 H 1.48494 * 109.47281 * 59.99843 * 24 22 20 26 26 H 1.48499 * 109.47262 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46803 * 300.00182 * 24 22 20 28 28 C 1.40522 * 106.86648 * 359.97438 * 5 4 3 29 29 H 1.08998 * 109.47615 * 263.31764 * 1 2 3 30 30 H 1.09000 * 109.47115 * 23.32132 * 1 2 3 31 31 H 1.09007 * 109.47369 * 143.32238 * 1 2 3 32 32 H 1.08994 * 109.46934 * 90.00849 * 8 7 6 33 33 H 1.09006 * 109.46873 * 210.00263 * 8 7 6 34 34 H 1.08995 * 109.47125 * 330.00379 * 8 7 6 35 35 H 1.08005 * 120.39424 * 180.32800 * 9 7 6 36 36 H 0.97001 * 120.00541 * 359.72209 * 13 11 10 37 37 H 1.09002 * 109.46723 * 59.99614 * 16 14 13 38 38 H 1.08997 * 109.47015 * 179.97438 * 16 14 13 39 39 H 1.08995 * 109.46708 * 299.99866 * 16 14 13 40 40 H 1.08994 * 109.47440 * 174.99953 * 17 14 13 41 41 H 1.08999 * 109.47021 * 295.00287 * 17 14 13 42 42 H 1.09001 * 109.46842 * 94.92689 * 19 18 17 43 43 H 1.08996 * 109.47579 * 214.93201 * 19 18 17 44 44 H 1.09002 * 109.46765 * 334.93513 * 19 18 17 45 45 H 0.96995 * 119.99440 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0004 6 7 4.7070 -1.5614 0.0003 7 6 4.5181 -2.8634 -0.0004 8 6 5.7148 -3.7793 0.0002 9 6 3.2460 -3.4137 0.0058 10 6 2.1383 -2.5669 -0.0004 11 6 0.7613 -3.1092 -0.0007 12 8 -0.0970 -2.5887 0.6844 13 7 0.4604 -4.1838 -0.7565 14 6 -0.9012 -4.7243 -0.7522 15 1 -1.3312 -4.6180 0.2437 16 6 -1.7576 -3.9576 -1.7620 17 6 -0.8634 -6.2050 -1.1359 18 7 0.0511 -6.9181 -0.2407 19 6 1.4683 -7.0438 -0.5897 20 6 -0.4189 -7.4673 0.9224 21 1 -1.4460 -7.7946 0.9887 22 6 0.4249 -7.6036 2.0162 23 7 1.6886 -7.2482 1.9208 24 14 -0.2332 -8.2913 3.6235 25 1 -0.7534 -9.6638 3.3985 26 1 0.8597 -8.3341 4.6279 27 1 -1.3293 -7.4220 4.1219 28 6 2.3734 -1.1781 0.0003 29 1 -0.3634 -0.1196 1.0206 30 1 -0.3633 0.9437 -0.4068 31 1 -0.3634 -0.8242 -0.6139 32 1 6.0024 -4.0006 1.0279 33 1 5.4628 -4.7066 -0.5143 34 1 6.5446 -3.2931 -0.5127 35 1 3.1145 -4.4857 0.0104 36 1 1.1454 -4.5993 -1.3034 37 1 -1.3275 -4.0640 -2.7580 38 1 -2.7705 -4.3601 -1.7591 39 1 -1.7845 -2.9028 -1.4887 40 1 -1.8635 -6.6291 -1.0467 41 1 -0.5167 -6.3050 -2.1644 42 1 2.0332 -6.2455 -0.1084 43 1 1.8421 -8.0096 -0.2495 44 1 1.5841 -6.9698 -1.6710 45 1 2.2780 -7.3430 2.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275612838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:48 Heat of formation + Delta-G solvation = 65.474930 kcal Electronic energy + Delta-G solvation = -29673.711211 eV Core-core repulsion = 25695.126823 eV Total energy + Delta-G solvation = -3978.584387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09916 -39.73628 -38.75072 -36.55803 -34.78571 -34.17442 -32.77388 -32.12683 -31.18769 -30.15154 -28.80466 -27.61495 -26.30981 -25.75225 -24.75617 -23.09738 -21.94415 -21.14641 -20.29886 -19.80014 -18.15185 -17.57215 -17.18835 -16.87937 -16.48680 -15.58115 -15.22302 -14.98340 -14.41771 -14.16421 -14.00991 -13.91191 -13.68660 -13.46201 -13.38802 -13.26454 -13.06797 -12.78236 -12.74324 -12.31977 -12.25312 -12.12726 -12.04496 -11.50870 -11.42362 -11.27223 -11.03770 -10.92638 -10.87605 -10.66455 -10.34892 -10.19953 -10.07720 -9.96888 -9.57212 -9.41249 -8.95148 -8.72774 -8.54685 -6.82387 -5.86742 -3.34862 0.16643 0.86340 1.82906 2.03001 2.87784 3.27656 3.32994 3.38594 3.40323 3.50112 3.67559 3.99696 4.37517 4.40540 4.44724 4.67034 4.90919 5.10494 5.18874 5.29928 5.40266 5.41765 5.49659 5.51113 5.53490 5.55420 5.66508 5.72713 5.76709 5.84918 5.90738 5.98211 6.03294 6.11357 6.27895 6.35039 6.38927 6.52918 6.72254 6.91702 6.99602 7.23279 7.53350 7.56946 7.71372 7.79171 8.31086 8.42869 9.13828 9.72764 10.22890 11.18916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.004361 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.869971 B = 6418.468464 C = 7386.994553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.161 3.839 3 N -0.287 5.287 4 O -0.086 6.086 5 C 0.291 3.709 6 N -0.477 5.477 7 C 0.204 3.796 8 C -0.107 4.107 9 C -0.167 4.167 10 C 0.010 3.990 11 C 0.557 3.443 12 O -0.527 6.527 13 N -0.682 5.682 14 C 0.116 3.884 15 H 0.090 0.910 16 C -0.160 4.160 17 C 0.143 3.857 18 N -0.599 5.599 19 C 0.162 3.838 20 C -0.260 4.260 21 H 0.066 0.934 22 C 0.014 3.986 23 N -0.906 5.906 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C -0.219 4.219 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.398 0.602 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.049 0.951 44 H -0.009 1.009 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 7.304 -8.618 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 N -0.035 5.035 4 O -0.090 6.090 5 C 0.108 3.892 6 N -0.198 5.198 7 C 0.061 3.939 8 C -0.164 4.164 9 C -0.187 4.187 10 C -0.003 4.003 11 C 0.341 3.659 12 O -0.405 6.405 13 N -0.331 5.331 14 C 0.009 3.991 15 H 0.108 0.892 16 C -0.219 4.219 17 C 0.015 3.985 18 N -0.321 5.321 19 C 0.018 3.982 20 C -0.390 4.390 21 H 0.084 0.916 22 C -0.185 4.185 23 N -0.550 5.550 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.225 4.225 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.185 0.815 36 H 0.233 0.767 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.010 0.990 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.322 9.367 -8.008 12.540 hybrid contribution -0.695 -1.550 0.951 1.947 sum 1.626 7.817 -7.057 10.656 Atomic orbital electron populations 1.20587 0.83533 1.03863 1.05770 1.24545 0.98561 0.88871 0.89998 1.80045 0.84097 1.17236 1.22109 1.89213 1.23361 1.14976 1.81413 1.20275 0.89221 0.86365 0.93299 1.66342 1.32944 1.02456 1.18092 1.21408 0.95234 0.88009 0.89253 1.20884 0.93948 0.97183 1.04391 1.22433 0.91195 1.02610 1.02508 1.20093 0.95390 0.90935 0.93849 1.17865 0.86265 0.81104 0.80624 1.90755 1.48307 1.60016 1.41409 1.45776 1.13454 1.28827 1.45064 1.22008 0.80389 0.96033 1.00695 0.89170 1.22164 1.00063 1.00576 0.99103 1.21215 0.95781 0.88333 0.93218 1.43818 1.04901 1.61249 1.22137 1.20933 0.84490 1.01344 0.91464 1.19087 0.96833 1.34369 0.88666 0.91606 1.25144 0.96163 0.99645 0.97504 1.69969 1.03731 1.51420 1.29876 0.86395 0.78044 0.78735 0.83714 1.20994 1.21613 1.20900 1.21183 0.93257 0.94320 1.13776 0.87764 0.90234 0.88669 0.89069 0.89085 0.89809 0.81538 0.76715 0.93057 0.91754 0.92933 0.92056 0.93962 0.95397 0.93272 0.99029 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 8.70 36.00 0.31 -0.69 16 2 C 0.16 2.44 7.44 -80.23 -0.60 1.84 16 3 N -0.29 -4.61 12.81 34.84 0.45 -4.17 16 4 O -0.09 -1.48 12.06 7.66 0.09 -1.39 16 5 C 0.29 4.88 8.64 -16.42 -0.14 4.73 16 6 N -0.48 -7.46 10.25 -9.24 -0.09 -7.55 16 7 C 0.20 2.77 6.78 -82.58 -0.56 2.21 16 8 C -0.11 -1.05 10.14 36.01 0.37 -0.68 16 9 C -0.17 -2.43 9.10 -39.00 -0.35 -2.78 16 10 C 0.01 0.17 5.79 -104.46 -0.61 -0.44 16 11 C 0.56 9.59 6.85 -12.26 -0.08 9.51 16 12 O -0.53 -10.12 13.39 5.35 0.07 -10.05 16 13 N -0.68 -10.92 4.36 -54.70 -0.24 -11.16 16 14 C 0.12 1.89 2.88 -67.93 -0.20 1.70 16 15 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 16 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 17 C 0.14 2.46 5.33 -4.04 -0.02 2.44 16 18 N -0.60 -13.02 2.78 -181.12 -0.50 -13.53 16 19 C 0.16 3.34 7.57 59.85 0.45 3.80 16 20 C -0.26 -6.53 9.63 -15.06 -0.14 -6.68 16 21 H 0.07 1.64 7.83 -52.48 -0.41 1.23 16 22 C 0.01 0.37 5.35 -17.43 -0.09 0.28 16 23 N -0.91 -23.80 10.36 55.49 0.57 -23.23 16 24 Si 0.90 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C -0.22 -3.57 6.13 -104.83 -0.64 -4.21 16 29 H 0.10 1.34 7.88 -51.93 -0.41 0.93 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.22 6.47 -51.92 -0.34 0.89 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.17 2.41 6.74 -52.48 -0.35 2.06 16 36 H 0.40 5.85 6.77 -40.82 -0.28 5.57 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 41 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 42 H 0.03 0.59 5.66 -51.93 -0.29 0.30 16 43 H 0.05 1.15 7.28 -51.93 -0.38 0.77 16 44 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 45 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -29.89 371.88 -7.20 -37.09 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.17 Total: 3.07 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -1.96 Total: 9.34 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.18 Total: -59.63 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.16 Total: -11.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.89 -7.20 -37.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275612838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.563 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds