Wall clock time and date at job start Tue Mar 31 2020 16:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29810 * 126.33811 * 2 1 4 4 O 1.41323 * 109.73115 * 179.97438 * 3 2 1 5 5 C 1.34834 * 109.41758 * 0.02562 * 4 3 2 6 6 N 1.32459 * 133.09554 * 179.97438 * 5 4 3 7 7 C 1.31561 * 122.02807 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.16929 * 180.02562 * 7 6 5 9 9 C 1.38597 * 121.65144 * 359.66790 * 7 6 5 10 10 C 1.39436 * 119.20658 * 0.62483 * 9 7 6 11 11 C 1.48000 * 121.10728 * 179.70680 * 10 9 7 12 12 O 1.21523 * 120.00176 * 139.08956 * 11 10 9 13 13 N 1.34777 * 119.99627 * 319.36297 * 11 10 9 14 14 C 1.46502 * 119.99753 * 179.72600 * 13 11 10 15 15 H 1.08998 * 109.47044 * 324.99530 * 14 13 11 16 16 C 1.53004 * 109.47432 * 85.00060 * 14 13 11 17 17 C 1.53002 * 109.47163 * 204.99827 * 14 13 11 18 18 N 1.46500 * 109.46845 * 54.99829 * 17 14 13 19 19 C 1.46501 * 120.00431 * 269.99858 * 18 17 14 20 20 C 1.36936 * 120.00105 * 90.00184 * 18 17 14 21 21 H 1.08004 * 120.00048 * 28.57121 * 20 18 17 22 22 C 1.38814 * 120.00483 * 208.56706 * 20 18 17 23 23 N 1.31626 * 119.99514 * 357.62826 * 22 20 18 24 24 Si 1.86794 * 120.00361 * 177.62335 * 22 20 18 25 25 H 1.48494 * 109.47281 * 59.99843 * 24 22 20 26 26 H 1.48499 * 109.47262 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46803 * 300.00182 * 24 22 20 28 28 C 1.40522 * 106.86648 * 359.97438 * 5 4 3 29 29 H 1.08998 * 109.47615 * 263.31764 * 1 2 3 30 30 H 1.09000 * 109.47115 * 23.32132 * 1 2 3 31 31 H 1.09007 * 109.47369 * 143.32238 * 1 2 3 32 32 H 1.08994 * 109.46934 * 90.00849 * 8 7 6 33 33 H 1.09006 * 109.46873 * 210.00263 * 8 7 6 34 34 H 1.08995 * 109.47125 * 330.00379 * 8 7 6 35 35 H 1.08005 * 120.39424 * 180.32800 * 9 7 6 36 36 H 0.97001 * 120.00541 * 359.72209 * 13 11 10 37 37 H 1.09002 * 109.46723 * 59.99614 * 16 14 13 38 38 H 1.08997 * 109.47015 * 179.97438 * 16 14 13 39 39 H 1.08995 * 109.46708 * 299.99866 * 16 14 13 40 40 H 1.08994 * 109.47440 * 174.99953 * 17 14 13 41 41 H 1.08999 * 109.47021 * 295.00287 * 17 14 13 42 42 H 1.09001 * 109.46842 * 94.92689 * 19 18 17 43 43 H 1.08996 * 109.47579 * 214.93201 * 19 18 17 44 44 H 1.09002 * 109.46765 * 334.93513 * 19 18 17 45 45 H 0.96995 * 119.99440 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0004 6 7 4.7070 -1.5614 0.0003 7 6 4.5181 -2.8634 -0.0004 8 6 5.7148 -3.7793 0.0002 9 6 3.2460 -3.4137 0.0058 10 6 2.1383 -2.5669 -0.0004 11 6 0.7613 -3.1092 -0.0007 12 8 -0.0970 -2.5887 0.6844 13 7 0.4604 -4.1838 -0.7565 14 6 -0.9012 -4.7243 -0.7522 15 1 -1.3312 -4.6180 0.2437 16 6 -1.7576 -3.9576 -1.7620 17 6 -0.8634 -6.2050 -1.1359 18 7 0.0511 -6.9181 -0.2407 19 6 1.4683 -7.0438 -0.5897 20 6 -0.4189 -7.4673 0.9224 21 1 -1.4460 -7.7946 0.9887 22 6 0.4249 -7.6036 2.0162 23 7 1.6886 -7.2482 1.9208 24 14 -0.2332 -8.2913 3.6235 25 1 -0.7534 -9.6638 3.3985 26 1 0.8597 -8.3341 4.6279 27 1 -1.3293 -7.4220 4.1219 28 6 2.3734 -1.1781 0.0003 29 1 -0.3634 -0.1196 1.0206 30 1 -0.3633 0.9437 -0.4068 31 1 -0.3634 -0.8242 -0.6139 32 1 6.0024 -4.0006 1.0279 33 1 5.4628 -4.7066 -0.5143 34 1 6.5446 -3.2931 -0.5127 35 1 3.1145 -4.4857 0.0104 36 1 1.1454 -4.5993 -1.3034 37 1 -1.3275 -4.0640 -2.7580 38 1 -2.7705 -4.3601 -1.7591 39 1 -1.7845 -2.9028 -1.4887 40 1 -1.8635 -6.6291 -1.0467 41 1 -0.5167 -6.3050 -2.1644 42 1 2.0332 -6.2455 -0.1084 43 1 1.8421 -8.0096 -0.2495 44 1 1.5841 -6.9698 -1.6710 45 1 2.2780 -7.3430 2.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275612838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:47 Heat of formation + Delta-G solvation = 45.768567 kcal Electronic energy + Delta-G solvation = -29674.565743 eV Core-core repulsion = 25695.126823 eV Total energy + Delta-G solvation = -3979.438919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30921 -41.04178 -39.96489 -38.06060 -36.03935 -35.70560 -34.02661 -33.22052 -32.85936 -31.49743 -29.88666 -28.64842 -27.91604 -27.34005 -26.00680 -24.30004 -23.41605 -22.46119 -21.66040 -21.08566 -19.34131 -18.90709 -18.61119 -18.41528 -17.71978 -17.02960 -16.70763 -16.45925 -15.75658 -15.36902 -15.30241 -15.21097 -15.10668 -14.87071 -14.56758 -14.48156 -14.40852 -13.92107 -13.80112 -13.65562 -13.31490 -13.11866 -13.08448 -13.00822 -12.82735 -12.63335 -12.57132 -12.54189 -12.23209 -12.19799 -12.02415 -11.83103 -11.67125 -11.42449 -10.80004 -10.67322 -10.54742 -10.12273 -9.98662 -8.60121 -7.79831 -5.26161 -1.02702 -0.35533 0.63836 0.82035 1.45932 1.49510 1.52175 1.58309 2.00064 2.28928 2.50982 2.53163 2.83605 3.17659 3.32172 3.37280 3.48214 3.78669 3.79600 3.99836 4.14785 4.23874 4.33884 4.45416 4.51454 4.52906 4.56143 4.60213 4.77604 4.82426 4.86790 4.89089 4.92441 4.98168 5.07417 5.07910 5.22925 5.30763 5.44367 5.50097 5.62588 5.73455 5.78168 5.90769 6.38266 6.43152 6.49522 7.12535 7.26519 7.95668 8.37460 9.22287 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.004361 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.869971 B = 6418.468464 C = 7386.994553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.163 3.837 3 N -0.296 5.296 4 O -0.103 6.103 5 C 0.278 3.722 6 N -0.487 5.487 7 C 0.211 3.789 8 C -0.106 4.106 9 C -0.162 4.162 10 C 0.001 3.999 11 C 0.555 3.445 12 O -0.553 6.553 13 N -0.676 5.676 14 C 0.123 3.877 15 H 0.048 0.952 16 C -0.149 4.149 17 C 0.142 3.858 18 N -0.613 5.613 19 C 0.171 3.829 20 C -0.261 4.261 21 H 0.062 0.938 22 C -0.033 4.033 23 N -0.920 5.920 24 Si 0.946 3.054 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.289 1.289 28 C -0.233 4.233 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.170 0.830 36 H 0.406 0.594 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.015 0.985 44 H 0.030 0.970 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 6.956 -10.190 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 N -0.046 5.046 4 O -0.105 6.105 5 C 0.096 3.904 6 N -0.209 5.209 7 C 0.068 3.932 8 C -0.162 4.162 9 C -0.183 4.183 10 C -0.012 4.012 11 C 0.340 3.660 12 O -0.432 6.432 13 N -0.325 5.325 14 C 0.016 3.984 15 H 0.067 0.933 16 C -0.208 4.208 17 C 0.015 3.985 18 N -0.336 5.336 19 C 0.027 3.973 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.230 4.230 23 N -0.566 5.566 24 Si 0.776 3.224 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.216 1.216 28 C -0.240 4.240 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.187 0.813 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.049 0.951 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.146 9.006 -9.617 13.350 hybrid contribution -0.668 -1.510 1.389 2.158 sum 1.478 7.496 -8.228 11.229 Atomic orbital electron populations 1.20642 0.81734 1.05212 1.05580 1.24940 0.99532 0.88293 0.88899 1.80024 0.83714 1.17567 1.23284 1.89167 1.24193 1.15409 1.81752 1.20499 0.89810 0.86370 0.93753 1.66470 1.32757 1.03073 1.18594 1.22027 0.96193 0.87708 0.87242 1.21059 0.92711 0.97136 1.05335 1.22531 0.91282 1.02491 1.01969 1.20066 0.95212 0.91089 0.94801 1.18033 0.86488 0.81179 0.80326 1.90738 1.49139 1.60868 1.42460 1.45741 1.13648 1.28355 1.44729 1.21815 0.80892 0.96100 0.99587 0.93328 1.22054 1.00187 0.99674 0.98842 1.21373 0.95210 0.88125 0.93756 1.44003 1.05854 1.61968 1.21784 1.20761 0.83815 0.99171 0.93550 1.19317 0.96534 1.33510 0.89811 0.91986 1.25647 0.96679 1.01084 0.99543 1.70085 1.04051 1.52809 1.29677 0.85676 0.76997 0.78344 0.81351 1.20393 1.22383 1.21566 1.21317 0.93454 0.94704 1.14508 0.88193 0.87539 0.88931 0.88215 0.87134 0.88415 0.81257 0.75794 0.90815 0.90303 0.93365 0.91740 0.90738 0.96150 0.96655 0.95145 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 8.70 71.23 0.62 -1.18 16 2 C 0.16 4.93 7.44 44.94 0.33 5.27 16 3 N -0.30 -9.50 12.81 -43.67 -0.56 -10.06 16 4 O -0.10 -3.58 12.06 29.81 0.36 -3.22 16 5 C 0.28 9.30 8.64 85.16 0.74 10.03 16 6 N -0.49 -14.89 10.25 -296.37 -3.04 -17.93 16 7 C 0.21 5.45 6.78 42.68 0.29 5.74 16 8 C -0.11 -1.82 10.14 71.24 0.72 -1.10 16 9 C -0.16 -4.55 9.10 22.64 0.21 -4.35 16 10 C 0.00 0.03 5.79 -19.76 -0.11 -0.08 16 11 C 0.55 18.86 6.85 86.83 0.59 19.45 16 12 O -0.55 -21.29 13.39 -3.79 -0.05 -21.34 16 13 N -0.68 -20.69 4.36 -445.26 -1.94 -22.63 16 14 C 0.12 3.83 2.88 44.99 0.13 3.96 16 15 H 0.05 1.94 7.58 -2.39 -0.02 1.93 16 16 C -0.15 -3.42 9.48 71.98 0.68 -2.74 16 17 C 0.14 4.56 5.33 86.38 0.46 5.02 16 18 N -0.61 -25.82 2.78 -726.93 -2.02 -27.85 16 19 C 0.17 6.80 7.57 127.77 0.97 7.77 16 20 C -0.26 -13.00 9.63 84.03 0.81 -12.19 16 21 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 22 C -0.03 -1.71 5.35 84.86 0.45 -1.26 16 23 N -0.92 -48.53 10.36 21.65 0.22 -48.31 16 24 Si 0.95 43.37 29.55 68.60 2.03 45.39 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 28 C -0.23 -7.58 6.13 -20.00 -0.12 -7.70 16 29 H 0.10 2.55 7.88 -2.39 -0.02 2.53 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.31 6.47 -2.38 -0.02 2.30 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.51 8.07 -2.38 -0.02 1.49 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.17 4.69 6.74 -2.91 -0.02 4.67 16 36 H 0.41 11.06 6.77 -92.71 -0.63 10.43 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 41 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 42 H 0.02 0.84 5.66 -2.39 -0.01 0.82 16 43 H 0.01 0.68 7.28 -2.39 -0.02 0.67 16 44 H 0.03 0.95 7.84 -2.39 -0.02 0.94 16 45 H 0.25 12.95 8.31 -92.71 -0.77 12.17 16 Total: -1.00 -64.94 371.88 2.17 -62.77 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.40 Total: 16.54 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 6.77 Total: 26.64 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -7.34 Total: -126.77 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.31 Total: -24.57 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.94 2.17 -62.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275612838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.534 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds