Wall clock time and date at job start Tue Mar 31 2020 16:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47207 * 269.99805 * 3 2 1 5 5 H 1.48497 * 109.46885 * 29.99960 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99918 * 3 2 1 7 7 C 1.38950 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00088 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00594 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00347 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99746 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99997 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47220 * 179.97438 * 12 10 9 14 14 C 1.48568 * 111.00263 * 170.00180 * 13 12 10 15 15 C 1.54377 * 104.59387 * 200.96086 * 14 13 12 16 16 H 1.08995 * 118.15613 * 244.14340 * 15 14 13 17 17 C 1.52997 * 118.12876 * 87.22943 * 15 14 13 18 18 H 1.09000 * 117.41115 * 15.99298 * 17 15 14 19 19 C 1.52999 * 117.44378 * 160.68278 * 17 15 14 20 20 N 1.46496 * 109.47304 * 244.22611 * 19 17 15 21 21 C 1.34776 * 120.00158 * 179.97438 * 20 19 17 22 22 O 1.21623 * 120.00336 * 0.02562 * 21 20 19 23 23 C 1.47265 * 120.00071 * 180.02562 * 21 20 19 24 24 C 1.46690 * 126.94273 * 0.11781 * 23 21 20 25 25 C 1.34482 * 106.33151 * 180.29993 * 24 23 21 26 26 N 1.36445 * 108.85796 * 359.75566 * 25 24 23 27 27 H 0.97002 * 124.84672 * 180.02562 * 26 25 24 28 28 C 1.34657 * 110.29784 * 359.97438 * 26 25 24 29 29 C 1.52999 * 60.54484 * 268.32705 * 17 15 14 30 30 H 1.08997 * 119.52468 * 248.25558 * 29 17 15 31 31 C 1.48557 * 110.99970 * 54.58196 * 13 12 10 32 32 H 0.96999 * 120.00105 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99067 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.47418 * 59.99618 * 12 10 9 35 35 H 1.08999 * 109.47539 * 300.00107 * 12 10 9 36 36 H 1.08997 * 110.41174 * 82.18051 * 14 13 12 37 37 H 1.09001 * 110.40610 * 319.73744 * 14 13 12 38 38 H 1.09008 * 109.47230 * 124.22636 * 19 17 15 39 39 H 1.08994 * 109.47394 * 4.22817 * 19 17 15 40 40 H 0.97001 * 120.00333 * 359.97438 * 20 19 17 41 41 H 1.07999 * 126.83431 * 0.02562 * 24 23 21 42 42 H 1.08005 * 125.57011 * 179.75774 * 25 24 23 43 43 H 1.08002 * 125.79869 * 179.97438 * 28 26 25 44 44 H 1.09004 * 110.41196 * 40.26320 * 31 13 12 45 45 H 1.08998 * 110.41234 * 277.81794 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0503 -3.7555 0.0026 14 6 7.5158 -3.8022 -0.2371 15 6 7.7823 -5.2375 -0.7394 16 1 8.4043 -5.8897 -0.1265 17 6 7.6486 -5.5135 -2.2383 18 1 7.6369 -4.6535 -2.9079 19 6 8.3316 -6.7674 -2.7881 20 7 9.3856 -6.3772 -3.7277 21 6 10.1266 -7.3221 -4.3396 22 8 9.9199 -8.4989 -4.1122 23 6 11.1865 -6.9298 -5.2838 24 6 11.5656 -5.5654 -5.6664 25 6 12.5702 -5.6864 -6.5522 26 7 12.8383 -7.0115 -6.7367 27 1 13.5225 -7.3613 -7.3287 28 6 12.0182 -7.7639 -5.9788 29 6 6.4371 -5.7133 -1.3255 30 1 6.0577 -6.7197 -1.1490 31 6 5.4709 -4.5254 -1.1281 32 1 -0.4850 0.8400 -0.0004 33 1 3.8648 -0.3633 0.0007 34 1 5.9234 -1.8571 0.8927 35 1 5.9248 -1.8563 -0.8872 36 1 8.0587 -3.6169 0.6898 37 1 7.8000 -3.0745 -0.9972 38 1 7.5962 -7.3855 -3.3032 39 1 8.7693 -7.3330 -1.9656 40 1 9.5503 -5.4387 -3.9094 41 1 11.1227 -4.6467 -5.3112 42 1 13.0814 -4.8683 -7.0380 43 1 12.0140 -8.8429 -5.9323 44 1 5.4351 -3.9108 -2.0277 45 1 4.4742 -4.8846 -0.8721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276676951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:17 Heat of formation + Delta-G solvation = 26.460343 kcal Electronic energy + Delta-G solvation = -26838.363121 eV Core-core repulsion = 22858.086934 eV Total energy + Delta-G solvation = -3980.276187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49534 -40.22253 -39.15415 -38.16588 -35.41025 -34.11116 -33.47599 -31.70382 -31.48088 -29.60164 -28.68490 -28.20279 -26.53148 -24.36008 -22.86261 -21.68098 -21.06945 -20.81605 -20.26797 -19.62391 -19.36845 -19.07884 -18.19958 -16.61183 -16.15230 -15.92520 -15.49749 -15.37865 -15.14442 -14.80662 -14.51010 -14.27932 -14.19228 -13.81144 -13.67506 -13.45242 -13.34105 -13.21856 -13.02426 -12.68304 -12.49671 -12.31873 -12.10034 -11.86871 -11.46837 -11.29399 -11.08092 -11.03830 -10.60275 -10.27810 -10.01064 -9.98311 -9.88011 -9.56203 -9.36281 -9.12485 -8.77410 -8.51730 -8.21157 -8.05420 -6.32251 -3.83749 1.44429 2.00753 2.67910 3.01802 3.05534 3.12839 3.14169 3.34180 3.52223 3.71031 4.03841 4.09526 4.36983 4.48623 4.57333 4.69653 4.76190 4.80814 4.99897 5.01923 5.02451 5.15944 5.20451 5.27670 5.41137 5.44027 5.56053 5.59273 5.61799 5.68539 5.73329 5.79803 5.89170 5.96628 6.12769 6.22524 6.26011 6.31358 6.46085 6.61226 6.96303 7.08150 7.16005 7.40041 7.56809 8.13391 8.14161 8.58267 8.93804 9.40780 9.80952 10.80728 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.001839 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.694388 B =15219.339547 C =15908.525444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.451 3.549 11 O -0.562 6.562 12 C 0.031 3.969 13 N -0.488 5.488 14 C 0.058 3.942 15 C -0.158 4.158 16 H 0.118 0.882 17 C -0.143 4.143 18 H 0.105 0.895 19 C 0.155 3.845 20 N -0.722 5.722 21 C 0.590 3.410 22 O -0.555 6.555 23 C -0.235 4.235 24 C -0.170 4.170 25 C -0.017 4.017 26 N -0.554 5.554 27 H 0.418 0.582 28 C 0.076 3.924 29 C -0.143 4.143 30 H 0.120 0.880 31 C 0.063 3.937 32 H 0.273 0.727 33 H 0.370 0.630 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.038 0.962 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.678 -8.220 -12.388 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.237 3.763 11 O -0.444 6.444 12 C -0.100 4.100 13 N -0.212 5.212 14 C -0.069 4.069 15 C -0.177 4.177 16 H 0.136 0.864 17 C -0.162 4.162 18 H 0.123 0.877 19 C 0.032 3.968 20 N -0.373 5.373 21 C 0.379 3.621 22 O -0.435 6.435 23 C -0.246 4.246 24 C -0.194 4.194 25 C -0.145 4.145 26 N -0.149 5.149 27 H 0.255 0.745 28 C -0.061 4.061 29 C -0.163 4.163 30 H 0.138 0.862 31 C -0.064 4.064 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.163 0.837 42 H 0.187 0.813 43 H 0.195 0.805 44 H 0.056 0.944 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 27.811 -9.860 -11.749 31.760 hybrid contribution 1.200 2.323 -1.068 2.824 sum 29.010 -7.537 -12.817 32.599 Atomic orbital electron populations 1.69619 1.05638 1.27515 1.49231 1.25039 0.95494 0.97979 0.97621 0.86677 0.79836 0.84073 0.78847 1.19668 1.20138 1.19457 1.19436 0.79174 0.96658 1.48098 0.86216 1.42193 1.07564 1.06098 1.66910 1.19598 0.88067 0.84585 0.84086 1.90496 1.69451 1.30581 1.53859 1.22125 0.95495 0.90669 1.01756 1.65415 1.02665 1.10638 1.42463 1.22695 0.90234 0.93992 1.00005 1.23551 1.01858 0.97881 0.94360 0.86442 1.22654 1.01524 0.99191 0.92833 0.87724 1.20793 0.89069 0.94722 0.92209 1.45746 1.36271 1.09861 1.45448 1.17366 0.80383 0.85004 0.79360 1.90780 1.70068 1.17815 1.64794 1.20380 1.03494 0.93681 1.07003 1.22084 0.99831 0.96118 1.01393 1.21815 1.02636 0.85559 1.04493 1.41671 1.30467 1.06593 1.36166 0.74508 1.21860 0.92462 0.97462 0.94327 1.23624 0.89408 1.00827 1.02424 0.86223 1.22889 0.99920 0.92221 0.91398 0.91594 0.79689 0.88937 0.93239 0.89714 0.93951 0.90723 0.91068 0.76458 0.83674 0.81324 0.80536 0.94361 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 10 C 0.45 10.14 7.50 -10.99 -0.08 10.06 16 11 O -0.56 -14.67 13.24 5.55 0.07 -14.59 16 12 C 0.03 0.53 5.55 -4.98 -0.03 0.50 16 13 N -0.49 -7.89 5.33 -231.41 -1.23 -9.12 16 14 C 0.06 0.71 6.30 -2.18 -0.01 0.70 16 15 C -0.16 -1.75 6.74 -89.24 -0.60 -2.35 16 16 H 0.12 1.20 8.12 -51.93 -0.42 0.78 16 17 C -0.14 -1.46 5.39 -90.62 -0.49 -1.95 16 18 H 0.10 1.02 8.04 -51.93 -0.42 0.61 16 19 C 0.16 1.59 5.95 -4.04 -0.02 1.56 16 20 N -0.72 -6.90 5.55 -61.44 -0.34 -7.24 16 21 C 0.59 6.85 7.81 -12.59 -0.10 6.75 16 22 O -0.56 -8.38 16.91 5.26 0.09 -8.30 16 23 C -0.24 -2.17 6.29 -103.35 -0.65 -2.82 16 24 C -0.17 -1.17 10.56 -37.50 -0.40 -1.56 16 25 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 26 N -0.55 -2.40 5.90 -12.85 -0.08 -2.48 16 27 H 0.42 0.38 8.96 -40.82 -0.37 0.02 16 28 C 0.08 0.54 11.69 -16.84 -0.20 0.34 16 29 C -0.14 -1.82 6.84 -89.24 -0.61 -2.43 16 30 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 31 C 0.06 1.02 5.11 -2.18 -0.01 1.01 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.05 0.73 7.88 -51.93 -0.41 0.32 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.47 7.82 -51.93 -0.41 0.07 16 38 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.40 2.94 7.53 -40.82 -0.31 2.63 16 41 H 0.15 0.74 7.70 -52.49 -0.40 0.34 16 42 H 0.17 0.34 8.06 -52.48 -0.42 -0.09 16 43 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 45 H 0.12 2.41 6.05 -51.93 -0.31 2.10 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -36.12 375.90 -9.67 -45.79 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.20 Total: 12.72 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.65 Total: 1.85 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.93 Total: -57.63 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.12 -9.67 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276676951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.251 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds