Wall clock time and date at job start Tue Mar 31 2020 16:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47207 * 269.99805 * 3 2 1 5 5 H 1.48497 * 109.46885 * 29.99960 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99918 * 3 2 1 7 7 C 1.38950 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00088 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00594 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00347 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99746 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99997 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47220 * 179.97438 * 12 10 9 14 14 C 1.48568 * 111.00263 * 170.00180 * 13 12 10 15 15 C 1.54377 * 104.59387 * 200.96086 * 14 13 12 16 16 H 1.08995 * 118.15613 * 244.14340 * 15 14 13 17 17 C 1.52997 * 118.12876 * 87.22943 * 15 14 13 18 18 H 1.09000 * 117.41115 * 15.99298 * 17 15 14 19 19 C 1.52999 * 117.44378 * 160.68278 * 17 15 14 20 20 N 1.46496 * 109.47304 * 244.22611 * 19 17 15 21 21 C 1.34776 * 120.00158 * 179.97438 * 20 19 17 22 22 O 1.21623 * 120.00336 * 0.02562 * 21 20 19 23 23 C 1.47265 * 120.00071 * 180.02562 * 21 20 19 24 24 C 1.46690 * 126.94273 * 0.11781 * 23 21 20 25 25 C 1.34482 * 106.33151 * 180.29993 * 24 23 21 26 26 N 1.36445 * 108.85796 * 359.75566 * 25 24 23 27 27 H 0.97002 * 124.84672 * 180.02562 * 26 25 24 28 28 C 1.34657 * 110.29784 * 359.97438 * 26 25 24 29 29 C 1.52999 * 60.54484 * 268.32705 * 17 15 14 30 30 H 1.08997 * 119.52468 * 248.25558 * 29 17 15 31 31 C 1.48557 * 110.99970 * 54.58196 * 13 12 10 32 32 H 0.96999 * 120.00105 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99067 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.47418 * 59.99618 * 12 10 9 35 35 H 1.08999 * 109.47539 * 300.00107 * 12 10 9 36 36 H 1.08997 * 110.41174 * 82.18051 * 14 13 12 37 37 H 1.09001 * 110.40610 * 319.73744 * 14 13 12 38 38 H 1.09008 * 109.47230 * 124.22636 * 19 17 15 39 39 H 1.08994 * 109.47394 * 4.22817 * 19 17 15 40 40 H 0.97001 * 120.00333 * 359.97438 * 20 19 17 41 41 H 1.07999 * 126.83431 * 0.02562 * 24 23 21 42 42 H 1.08005 * 125.57011 * 179.75774 * 25 24 23 43 43 H 1.08002 * 125.79869 * 179.97438 * 28 26 25 44 44 H 1.09004 * 110.41196 * 40.26320 * 31 13 12 45 45 H 1.08998 * 110.41234 * 277.81794 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0503 -3.7555 0.0026 14 6 7.5158 -3.8022 -0.2371 15 6 7.7823 -5.2375 -0.7394 16 1 8.4043 -5.8897 -0.1265 17 6 7.6486 -5.5135 -2.2383 18 1 7.6369 -4.6535 -2.9079 19 6 8.3316 -6.7674 -2.7881 20 7 9.3856 -6.3772 -3.7277 21 6 10.1266 -7.3221 -4.3396 22 8 9.9199 -8.4989 -4.1122 23 6 11.1865 -6.9298 -5.2838 24 6 11.5656 -5.5654 -5.6664 25 6 12.5702 -5.6864 -6.5522 26 7 12.8383 -7.0115 -6.7367 27 1 13.5225 -7.3613 -7.3287 28 6 12.0182 -7.7639 -5.9788 29 6 6.4371 -5.7133 -1.3255 30 1 6.0577 -6.7197 -1.1490 31 6 5.4709 -4.5254 -1.1281 32 1 -0.4850 0.8400 -0.0004 33 1 3.8648 -0.3633 0.0007 34 1 5.9234 -1.8571 0.8927 35 1 5.9248 -1.8563 -0.8872 36 1 8.0587 -3.6169 0.6898 37 1 7.8000 -3.0745 -0.9972 38 1 7.5962 -7.3855 -3.3032 39 1 8.7693 -7.3330 -1.9656 40 1 9.5503 -5.4387 -3.9094 41 1 11.1227 -4.6467 -5.3112 42 1 13.0814 -4.8683 -7.0380 43 1 12.0140 -8.8429 -5.9323 44 1 5.4351 -3.9108 -2.0277 45 1 4.4742 -4.8846 -0.8721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276676951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:16 Heat of formation + Delta-G solvation = -3.113582 kcal Electronic energy + Delta-G solvation = -26839.645542 eV Core-core repulsion = 22858.086934 eV Total energy + Delta-G solvation = -3981.558609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97549 -41.34377 -40.19216 -39.69984 -36.56008 -35.89759 -34.64381 -33.75435 -32.03564 -30.14963 -29.79415 -29.30337 -27.79348 -26.03090 -23.73967 -22.74268 -21.80063 -21.45510 -21.38446 -21.17253 -20.33622 -20.09238 -19.58775 -17.69702 -17.33001 -17.04690 -16.81111 -16.50518 -16.32535 -16.19442 -15.66123 -15.15979 -14.99834 -14.86432 -14.77422 -14.54222 -14.43704 -14.29841 -14.20475 -13.87105 -13.79817 -13.38993 -13.08725 -13.04382 -13.01027 -12.57165 -12.40632 -12.23112 -12.15409 -11.97049 -11.48677 -11.20456 -10.99593 -10.81783 -10.28800 -10.21804 -10.11897 -9.69184 -9.33564 -9.26134 -8.41000 -6.02048 0.80103 1.30732 1.35767 1.45181 1.59294 1.94349 2.10037 2.23457 2.48347 2.58474 2.61306 2.80265 3.15088 3.20121 3.44435 3.69697 3.96752 4.05271 4.09143 4.14103 4.19950 4.22552 4.33090 4.37506 4.42961 4.48643 4.55028 4.59116 4.62002 4.71293 4.78784 5.00004 5.01785 5.13684 5.18252 5.24206 5.32160 5.49643 5.53202 5.79941 5.85105 5.90823 5.98519 6.06029 6.59466 6.61665 6.73845 6.88572 7.34191 7.39054 7.96525 8.76576 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.001839 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.694388 B =15219.339547 C =15908.525444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.328 4.328 8 H 0.055 0.945 9 N -0.589 5.589 10 C 0.448 3.552 11 O -0.606 6.606 12 C 0.043 3.957 13 N -0.512 5.512 14 C 0.060 3.940 15 C -0.144 4.144 16 H 0.131 0.869 17 C -0.114 4.114 18 H 0.118 0.882 19 C 0.160 3.840 20 N -0.711 5.711 21 C 0.584 3.416 22 O -0.602 6.602 23 C -0.271 4.271 24 C -0.187 4.187 25 C -0.007 4.007 26 N -0.539 5.539 27 H 0.436 0.564 28 C 0.072 3.928 29 C -0.165 4.165 30 H 0.116 0.884 31 C 0.066 3.934 32 H 0.279 0.721 33 H 0.390 0.610 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.159 0.841 42 H 0.204 0.796 43 H 0.182 0.818 44 H 0.034 0.966 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.523 -5.433 -13.368 36.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.457 4.457 8 H 0.073 0.927 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.491 6.491 12 C -0.088 4.088 13 N -0.236 5.236 14 C -0.066 4.066 15 C -0.162 4.162 16 H 0.149 0.851 17 C -0.133 4.133 18 H 0.136 0.864 19 C 0.036 3.964 20 N -0.363 5.363 21 C 0.375 3.625 22 O -0.485 6.485 23 C -0.282 4.282 24 C -0.211 4.211 25 C -0.135 4.135 26 N -0.134 5.134 27 H 0.276 0.724 28 C -0.067 4.067 29 C -0.184 4.184 30 H 0.134 0.866 31 C -0.061 4.061 32 H 0.088 0.912 33 H 0.225 0.775 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.177 0.823 42 H 0.221 0.779 43 H 0.199 0.801 44 H 0.052 0.948 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 32.712 -7.053 -12.747 35.809 hybrid contribution -0.334 1.297 -0.802 1.561 sum 32.378 -5.756 -13.549 35.567 Atomic orbital electron populations 1.69806 1.08173 1.29251 1.50267 1.26130 0.96478 1.02769 0.96049 0.85360 0.79533 0.76647 0.79955 1.18079 1.20070 1.15348 1.18997 0.81459 0.94916 1.50361 0.92734 1.42009 1.05811 1.07518 1.67779 1.20865 0.90841 0.83412 0.81317 1.90511 1.71370 1.32332 1.54860 1.22078 0.90206 0.91921 1.04624 1.65384 1.05293 1.10243 1.42727 1.22795 0.87358 0.94794 1.01696 1.23663 1.00045 0.97601 0.94916 0.85132 1.22521 0.98825 0.99234 0.92692 0.86434 1.20655 0.89018 0.94562 0.92136 1.45625 1.35517 1.10363 1.44750 1.17824 0.80752 0.84519 0.79432 1.90743 1.71588 1.19654 1.66537 1.20418 1.04097 0.95606 1.08050 1.22331 1.00853 0.95543 1.02362 1.22371 1.01611 0.86258 1.03241 1.41711 1.29958 1.06414 1.35364 0.72444 1.22002 0.92504 0.97909 0.94290 1.23425 0.89820 0.99437 1.05754 0.86623 1.22592 0.98685 0.93547 0.91274 0.91154 0.77464 0.85975 0.89962 0.87883 0.91826 0.91961 0.91444 0.74950 0.82312 0.77946 0.80091 0.94782 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.96 21.66 0.30 -56.21 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.97 38.53 27.74 68.60 1.90 40.43 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 7 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 8 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 9 N -0.59 -27.77 5.09 -306.99 -1.56 -29.33 16 10 C 0.45 20.28 7.50 87.66 0.66 20.93 16 11 O -0.61 -33.51 13.24 -3.07 -0.04 -33.55 16 12 C 0.04 1.32 5.55 85.56 0.47 1.80 16 13 N -0.51 -15.69 5.33 -886.03 -4.73 -20.42 16 14 C 0.06 1.24 6.30 86.45 0.54 1.78 16 15 C -0.14 -2.82 6.74 -9.90 -0.07 -2.89 16 16 H 0.13 2.28 8.12 -2.39 -0.02 2.26 16 17 C -0.11 -2.11 5.39 -10.80 -0.06 -2.16 16 18 H 0.12 1.94 8.04 -2.39 -0.02 1.92 16 19 C 0.16 3.15 5.95 86.38 0.51 3.66 16 20 N -0.71 -12.82 5.55 -466.53 -2.59 -15.41 16 21 C 0.58 13.49 7.81 86.62 0.68 14.17 16 22 O -0.60 -18.74 16.91 -4.10 -0.07 -18.81 16 23 C -0.27 -4.73 6.29 -19.04 -0.12 -4.85 16 24 C -0.19 -2.12 10.56 23.62 0.25 -1.87 16 25 C -0.01 -0.04 11.89 83.12 0.99 0.94 16 26 N -0.54 -3.26 5.90 -194.56 -1.15 -4.40 16 27 H 0.44 -0.49 8.96 -92.71 -0.83 -1.32 16 28 C 0.07 0.94 11.69 83.92 0.98 1.92 16 29 C -0.16 -4.14 6.84 -9.90 -0.07 -4.21 16 30 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 31 C 0.07 2.20 5.11 86.45 0.44 2.64 16 32 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 34 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.08 7.82 -2.39 -0.02 1.07 16 38 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.41 7.94 -2.39 -0.02 1.39 16 40 H 0.41 5.19 7.53 -92.71 -0.70 4.49 16 41 H 0.16 1.18 7.70 -2.91 -0.02 1.16 16 42 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 43 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 45 H 0.07 3.13 6.05 -2.39 -0.01 3.11 16 Total: -1.00 -87.21 375.90 -2.46 -89.67 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -1.07 Total: 35.01 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.54 Total: 13.03 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -9.73 Total: -125.78 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.11 Total: -52.36 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.43 kcal Total: -87.21 -2.46 -89.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276676951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.558 kcal (2) G-P(sol) polarization free energy of solvation -87.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds