Wall clock time and date at job start Tue Mar 31 2020 16:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00539 * 2 1 4 4 H 1.48493 * 109.47114 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.46663 * 29.99717 * 3 2 1 6 6 H 1.48503 * 109.47184 * 149.99708 * 3 2 1 7 7 C 1.37881 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00136 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.48462 * 111.00129 * 287.62289 * 10 9 7 12 12 C 1.54925 * 103.21541 * 200.10974 * 11 10 9 13 13 C 1.54430 * 102.96404 * 37.73366 * 12 11 10 14 14 H 1.09002 * 111.94545 * 99.42620 * 13 12 11 15 15 C 1.54007 * 109.07807 * 225.10179 * 13 12 11 16 16 N 1.47241 * 106.09824 * 132.33394 * 15 13 12 17 17 C 1.34775 * 126.70631 * 148.32114 * 16 15 13 18 18 O 1.21281 * 120.00641 * 179.67976 * 17 16 15 19 19 C 1.50709 * 119.99858 * 359.68068 * 17 16 15 20 20 N 1.46498 * 109.47112 * 180.02562 * 19 17 16 21 21 C 1.35871 * 119.93572 * 89.99908 * 20 19 17 22 22 C 1.36019 * 119.18847 * 179.97438 * 21 20 19 23 23 C 1.39815 * 119.08439 * 0.02562 * 22 21 20 24 24 N 1.31762 * 119.82789 * 359.97438 * 23 22 21 25 25 C 1.33521 * 120.81707 * 0.02562 * 24 23 22 26 26 O 1.21954 * 119.52344 * 179.97438 * 25 24 23 27 27 C 1.47187 * 106.59560 * 328.05196 * 16 15 13 28 28 C 1.47908 * 110.99599 * 169.99738 * 10 9 7 29 29 H 1.08999 * 112.19591 * 22.99768 * 28 10 9 30 30 H 0.97007 * 119.99650 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47068 * 59.99221 * 9 7 2 32 32 H 1.09001 * 109.46819 * 300.00287 * 9 7 2 33 33 H 1.08999 * 110.66838 * 81.68279 * 11 10 9 34 34 H 1.09002 * 110.81745 * 318.61085 * 11 10 9 35 35 H 1.08997 * 110.71525 * 279.36250 * 12 11 10 36 36 H 1.09000 * 110.86407 * 156.17044 * 12 11 10 37 37 H 1.08999 * 110.24186 * 13.14168 * 15 13 12 38 38 H 1.09005 * 110.10231 * 251.44236 * 15 13 12 39 39 H 1.08999 * 109.46829 * 59.99647 * 19 17 16 40 40 H 1.09003 * 109.46735 * 300.00356 * 19 17 16 41 41 H 1.07995 * 120.40413 * 359.97438 * 21 20 19 42 42 H 1.08001 * 120.45763 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.08645 * 179.72210 * 23 22 21 44 44 H 1.08999 * 110.05561 * 150.39688 * 27 16 15 45 45 H 1.08997 * 110.05601 * 271.88698 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 2.8701 -3.7476 -1.3204 12 6 3.3954 -5.2050 -1.3088 13 6 2.2677 -5.9739 -0.5863 14 1 1.6091 -6.4856 -1.2881 15 6 2.8920 -6.9249 0.4518 16 7 2.1361 -6.7210 1.6989 17 6 1.8827 -7.6443 2.6474 18 8 1.2483 -7.3405 3.6354 19 6 2.3877 -9.0544 2.4804 20 7 1.9837 -9.8579 3.6368 21 6 0.7984 -10.5220 3.6203 22 6 0.4387 -11.2640 4.7021 23 6 1.2991 -11.3227 5.8026 24 7 2.4398 -10.6637 5.7784 25 6 2.7876 -9.9369 4.7137 26 8 3.8488 -9.3360 4.7169 27 6 1.7168 -5.3102 1.7104 28 6 1.5161 -4.9023 0.2404 29 1 0.4594 -4.8587 -0.0233 30 1 -0.4850 0.8401 -0.0004 31 1 0.6245 -2.5571 -0.8896 32 1 0.6239 -2.5567 0.8903 33 1 3.6961 -3.0417 -1.4076 34 1 2.1549 -3.6028 -2.1301 35 1 4.3286 -5.2740 -0.7499 36 1 3.5272 -5.5783 -2.3244 37 1 3.9424 -6.6781 0.6058 38 1 2.7944 -7.9585 0.1195 39 1 3.4751 -9.0445 2.4063 40 1 1.9656 -9.4863 1.5729 41 1 0.1499 -10.4614 2.7589 42 1 -0.4990 -11.7998 4.7111 43 1 1.0276 -11.9033 6.6717 44 1 0.7811 -5.2027 2.2591 45 1 2.4912 -4.6938 2.1669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277933851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:15 Heat of formation + Delta-G solvation = -23.256308 kcal Electronic energy + Delta-G solvation = -28408.905283 eV Core-core repulsion = 24426.473220 eV Total energy + Delta-G solvation = -3982.432063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.86538 -41.48890 -39.89206 -38.24349 -36.96860 -36.50369 -34.99850 -33.02272 -32.28160 -31.42812 -29.39256 -29.29335 -27.39229 -25.91810 -24.99308 -24.29125 -24.07932 -21.96466 -20.77617 -20.65994 -19.41345 -18.81562 -18.62985 -18.36801 -17.74869 -17.40287 -16.99060 -16.72231 -16.25464 -16.03510 -15.82939 -15.68122 -15.41832 -14.81173 -14.76025 -14.41460 -14.17149 -14.09636 -13.81431 -13.72265 -13.31872 -13.27296 -13.12124 -12.86705 -12.80927 -12.51681 -12.43447 -12.31689 -12.10182 -12.02831 -11.83549 -11.70150 -11.55213 -11.34354 -11.07505 -10.65589 -10.65419 -9.89786 -9.57074 -9.21523 -8.25287 -6.35318 -0.32605 0.72121 1.18559 1.32466 1.37118 1.39254 1.50539 1.84809 2.36646 2.76116 3.07708 3.16355 3.27397 3.32539 3.46737 3.58896 3.66617 3.75677 3.85234 3.93192 4.08627 4.18943 4.23846 4.31451 4.40530 4.51250 4.59786 4.61795 4.63797 4.78599 4.84378 4.87364 4.90467 4.97248 5.08204 5.15913 5.17005 5.24802 5.32154 5.40072 5.47304 5.61524 5.99341 6.23462 6.36242 6.49748 6.67547 6.80668 6.86006 7.08197 7.34855 8.85953 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002417 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.301706 B =11582.977117 C =12062.335656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.203 3.797 10 N -0.521 5.521 11 C 0.042 3.958 12 C -0.103 4.103 13 C -0.096 4.096 14 H 0.123 0.877 15 C 0.106 3.894 16 N -0.607 5.607 17 C 0.512 3.488 18 O -0.588 6.588 19 C 0.085 3.915 20 N -0.502 5.502 21 C 0.185 3.815 22 C -0.280 4.280 23 C 0.248 3.752 24 N -0.604 5.604 25 C 0.617 3.383 26 O -0.598 6.598 27 C 0.127 3.873 28 C 0.051 3.949 29 H 0.053 0.947 30 H 0.265 0.735 31 H -0.030 1.030 32 H -0.006 1.006 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.190 0.810 41 H 0.222 0.778 42 H 0.207 0.793 43 H 0.213 0.787 44 H 0.048 0.952 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -29.523 -2.718 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.245 5.245 11 C -0.085 4.085 12 C -0.141 4.141 13 C -0.116 4.116 14 H 0.141 0.859 15 C -0.015 4.015 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.468 6.468 19 C -0.041 4.041 20 N -0.215 5.215 21 C 0.049 3.951 22 C -0.304 4.304 23 C 0.070 3.930 24 N -0.339 5.339 25 C 0.320 3.680 26 O -0.477 6.477 27 C 0.003 3.997 28 C -0.059 4.059 29 H 0.071 0.929 30 H 0.073 0.927 31 H -0.013 1.013 32 H 0.012 0.988 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.207 0.793 41 H 0.239 0.761 42 H 0.224 0.776 43 H 0.229 0.771 44 H 0.067 0.933 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.981 -28.628 -1.185 28.669 hybrid contribution -1.146 1.901 -0.669 2.318 sum -0.166 -26.727 -1.854 26.792 Atomic orbital electron populations 1.70080 1.07715 1.27927 1.51787 1.25917 0.95752 1.03239 0.94799 0.85394 0.78445 0.78279 0.78593 1.19332 1.20872 1.19227 1.21428 0.93559 0.91116 1.49997 0.92110 1.19482 0.90146 0.89449 0.93253 1.64709 1.28006 1.01628 1.30165 1.23131 0.97864 0.98379 0.89153 1.22641 0.97425 0.91826 1.02180 1.22898 0.97331 0.94700 0.96644 0.85911 1.22674 0.95597 1.02317 0.80895 1.48559 1.53851 1.09604 1.21927 1.21035 0.79477 0.87905 0.81519 1.90747 1.43248 1.81849 1.30933 1.22068 1.05347 0.86745 0.89939 1.46031 1.18880 1.39364 1.17190 1.23579 0.84083 0.85671 1.01800 1.22200 1.06098 1.08439 0.93708 1.24519 0.85024 0.85266 0.98197 1.69873 1.23091 1.16421 1.24494 1.18473 0.85202 0.83056 0.81228 1.90932 1.25587 1.49885 1.81329 1.21762 0.99217 0.81577 0.97141 1.23064 0.97129 0.91375 0.94302 0.92939 0.92662 1.01260 0.98816 0.91513 0.95224 0.89934 0.87594 0.89947 0.85157 0.85017 0.79303 0.76146 0.77580 0.77086 0.93339 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.52 -29.97 8.90 25.60 0.23 -29.74 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.20 10.85 4.51 85.56 0.39 11.24 16 10 N -0.52 -21.67 4.67 -859.48 -4.02 -25.69 16 11 C 0.04 1.45 6.11 86.66 0.53 1.97 16 12 C -0.10 -2.15 6.60 31.74 0.21 -1.95 16 13 C -0.10 -1.93 4.01 -9.35 -0.04 -1.97 16 14 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 15 C 0.11 1.69 6.40 86.58 0.55 2.24 16 16 N -0.61 -15.50 3.32 -814.52 -2.70 -18.20 16 17 C 0.51 13.64 7.95 87.66 0.70 14.34 16 18 O -0.59 -22.20 16.67 -3.03 -0.05 -22.25 16 19 C 0.08 1.31 4.80 85.64 0.41 1.72 16 20 N -0.50 -9.73 2.08 -661.34 -1.37 -11.10 16 21 C 0.18 1.63 10.41 83.55 0.87 2.50 16 22 C -0.28 -1.78 10.07 22.14 0.22 -1.56 16 23 C 0.25 3.19 11.30 85.09 0.96 4.15 16 24 N -0.60 -16.19 10.48 -325.24 -3.41 -19.60 16 25 C 0.62 18.92 8.34 179.49 1.50 20.41 16 26 O -0.60 -24.26 16.74 -5.17 -0.09 -24.35 16 27 C 0.13 4.43 6.68 86.54 0.58 5.01 16 28 C 0.05 1.70 3.40 45.63 0.16 1.86 16 29 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 30 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 31 H -0.03 -1.72 7.84 -2.39 -0.02 -1.74 16 32 H -0.01 -0.37 8.08 -2.39 -0.02 -0.39 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.03 1.06 7.82 -2.39 -0.02 1.04 16 35 H 0.08 1.66 7.17 -2.39 -0.02 1.64 16 36 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.34 7.13 -2.39 -0.02 1.32 16 38 H 0.13 0.66 7.31 -2.38 -0.02 0.64 16 39 H 0.13 2.19 7.39 -2.39 -0.02 2.17 16 40 H 0.19 0.32 7.76 -2.39 -0.02 0.30 16 41 H 0.22 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.21 -0.66 8.06 -2.91 -0.02 -0.68 16 43 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 45 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 Total: -1.00 -100.15 371.95 -0.60 -100.75 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: 1.00 Total: -0.68 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 7.72 Total: 30.76 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -11.22 Total: -131.25 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.14 Total: -46.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -100.15 -0.60 -100.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277933851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.498 kcal (2) G-P(sol) polarization free energy of solvation -100.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds