Wall clock time and date at job start Tue Mar 31 2020 16:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48500 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00154 * 3 2 1 6 6 H 1.48496 * 109.46956 * 60.00177 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47505 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.48133 * 110.99976 * 189.99898 * 11 10 9 13 13 C 1.53132 * 85.89541 * 222.96186 * 12 11 10 14 14 C 1.52965 * 121.08026 * 258.11778 * 13 12 11 15 15 C 1.53643 * 82.96234 * 259.37844 * 14 13 12 16 16 N 1.46178 * 121.13810 * 148.39245 * 13 12 11 17 17 C 1.34776 * 136.20215 * 279.81676 * 16 13 12 18 18 O 1.21279 * 119.99712 * 359.63262 * 17 16 13 19 19 C 1.50698 * 120.00176 * 179.63634 * 17 16 13 20 20 N 1.46497 * 109.46853 * 180.02562 * 19 17 16 21 21 C 1.35864 * 119.93895 * 89.99759 * 20 19 17 22 22 C 1.36025 * 119.19223 * 179.71750 * 21 20 19 23 23 C 1.39806 * 119.08149 * 0.28293 * 22 21 20 24 24 N 1.31762 * 119.83247 * 359.97438 * 23 22 21 25 25 C 1.33525 * 120.81256 * 0.02562 * 24 23 22 26 26 O 1.21950 * 119.52244 * 179.97438 * 25 24 23 27 27 C 1.48122 * 111.00059 * 90.42530 * 11 10 9 28 28 H 0.96993 * 119.99239 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47084 * 60.00235 * 9 7 2 30 30 H 1.09003 * 109.47113 * 300.00813 * 9 7 2 31 31 H 1.08997 * 109.47451 * 59.99978 * 10 9 7 32 32 H 1.09008 * 109.47107 * 300.00010 * 10 9 7 33 33 H 1.09003 * 113.80070 * 108.71640 * 12 11 10 34 34 H 1.08992 * 113.80388 * 337.20757 * 12 11 10 35 35 H 1.09001 * 114.50271 * 145.85416 * 14 13 12 36 36 H 1.09006 * 114.16807 * 12.88294 * 14 13 12 37 37 H 1.09001 * 113.43043 * 219.65894 * 15 14 13 38 38 H 1.09000 * 113.47791 * 89.35892 * 15 14 13 39 39 H 1.08994 * 109.47180 * 59.99549 * 19 17 16 40 40 H 1.09000 * 109.46577 * 299.99465 * 19 17 16 41 41 H 1.08002 * 120.40671 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.46378 * 180.29726 * 22 21 20 43 43 H 1.08000 * 120.08595 * 179.97438 * 23 22 21 44 44 H 1.09001 * 113.80777 * 22.78981 * 27 11 10 45 45 H 1.09003 * 113.80148 * 251.27655 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4245 -6.0751 0.2389 13 6 1.6504 -6.7872 -0.8740 14 6 0.5920 -7.8426 -0.5490 15 6 1.7240 -8.8164 -0.9108 16 7 2.3062 -7.7560 -1.7503 17 6 3.0976 -7.7025 -2.8399 18 8 3.4106 -6.6291 -3.3099 19 6 3.5936 -8.9763 -3.4744 20 7 4.4288 -8.6515 -4.6332 21 6 5.7669 -8.4758 -4.4767 22 6 6.5290 -8.1803 -5.5641 23 6 5.9128 -8.0596 -6.8132 24 7 4.6111 -8.2327 -6.9214 25 6 3.8683 -8.5226 -5.8504 26 8 2.6653 -8.6775 -5.9774 27 6 1.2546 -5.3987 -1.3842 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6045 0.8894 32 1 2.8719 -3.6044 -0.8906 33 1 2.3064 -6.5344 1.2204 34 1 3.4643 -5.8663 -0.0126 35 1 -0.2532 -7.8621 -1.2370 36 1 0.2957 -7.8694 0.4997 37 1 1.3855 -9.6825 -1.4795 38 1 2.3501 -9.0894 -0.0614 39 1 2.7430 -9.5771 -3.7960 40 1 4.1819 -9.5382 -2.7490 41 1 6.2207 -8.5736 -3.5016 42 1 7.5953 -8.0411 -5.4639 43 1 6.5022 -7.8251 -7.6872 44 1 1.9444 -4.9876 -2.1212 45 1 0.2103 -5.3228 -1.6875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:59 Heat of formation + Delta-G solvation = 69.521494 kcal Electronic energy + Delta-G solvation = -28278.611765 eV Core-core repulsion = 24300.202850 eV Total energy + Delta-G solvation = -3978.408915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15011 -41.31954 -38.81778 -37.35460 -37.00752 -35.75665 -33.28945 -31.64945 -30.99005 -30.23177 -28.45859 -26.74131 -26.00406 -25.24692 -23.99163 -23.75408 -22.56877 -21.43275 -20.04274 -18.71697 -18.57262 -18.02416 -17.15429 -17.12019 -16.52521 -16.24685 -15.94985 -15.76322 -15.13850 -15.04153 -14.84784 -14.45412 -14.32407 -14.04696 -13.58734 -13.36283 -13.01331 -12.67684 -12.63128 -12.54508 -12.48279 -12.39652 -12.03576 -11.76834 -11.66361 -11.20112 -11.16741 -11.10562 -10.87286 -10.64128 -10.33095 -10.10786 -9.93110 -9.76475 -9.39311 -9.09154 -8.92679 -8.85469 -8.36664 -8.29185 -5.97003 -3.99685 0.23099 1.34896 1.82959 2.21954 2.51767 3.32985 3.39983 3.44081 3.48375 3.87824 3.90418 3.93991 4.09579 4.18563 4.21890 4.36524 4.43125 4.50631 4.63411 4.73412 4.79145 4.89790 4.97116 5.02338 5.12632 5.35917 5.38869 5.50998 5.56407 5.63292 5.70506 5.80782 5.82665 5.88930 6.01239 6.09703 6.17187 6.37565 6.76517 7.05135 7.34076 7.43389 7.45697 7.76446 7.77767 7.85278 7.89522 8.08511 8.44645 9.07515 9.63891 11.14456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002768 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.056783 B =10111.842513 C =11604.808602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.032 3.968 11 N -0.470 5.470 12 C 0.010 3.990 13 C 0.128 3.872 14 C -0.118 4.118 15 C 0.096 3.904 16 N -0.633 5.633 17 C 0.528 3.472 18 O -0.518 6.518 19 C 0.080 3.920 20 N -0.500 5.500 21 C 0.193 3.807 22 C -0.294 4.294 23 C 0.250 3.750 24 N -0.544 5.544 25 C 0.633 3.367 26 O -0.527 6.527 27 C 0.012 3.988 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.172 0.828 42 H 0.160 0.840 43 H 0.176 0.824 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.114 -26.873 -3.909 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.096 4.096 11 N -0.193 5.193 12 C -0.121 4.121 13 C 0.043 3.957 14 C -0.156 4.156 15 C -0.027 4.027 16 N -0.369 5.369 17 C 0.315 3.685 18 O -0.393 6.393 19 C -0.047 4.047 20 N -0.215 5.215 21 C 0.055 3.945 22 C -0.319 4.319 23 C 0.067 3.933 24 N -0.276 5.276 25 C 0.335 3.665 26 O -0.401 6.401 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.178 0.822 43 H 0.193 0.807 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.165 -26.137 -4.686 28.805 hybrid contribution 1.844 1.005 0.302 2.122 sum 13.009 -25.132 -4.384 28.637 Atomic orbital electron populations 1.69988 1.06020 1.26451 1.50688 1.25001 0.94844 0.99196 0.95300 0.86536 0.80059 0.83813 0.77593 1.19800 1.20980 1.20954 1.21231 0.92960 0.91102 1.50833 0.92830 1.18962 0.93774 0.89824 0.97812 1.22855 0.97228 0.90037 0.99437 1.68637 1.31780 1.01713 1.17129 1.24086 0.96574 0.93346 0.98062 1.23526 0.91353 0.90837 0.90020 1.23101 0.95675 0.92992 1.03826 1.23112 0.93573 0.92464 0.93527 1.49655 1.49122 1.12013 1.26124 1.20114 0.77749 0.90845 0.79788 1.90812 1.56234 1.30469 1.61812 1.21765 0.98434 0.96835 0.87664 1.46121 1.07779 1.56613 1.10939 1.22582 0.82507 0.88103 1.01310 1.21626 1.02740 1.14716 0.92848 1.23735 0.90562 0.81553 0.97484 1.69969 1.07623 1.22362 1.27598 1.18228 0.89109 0.79777 0.79352 1.91005 1.12300 1.53085 1.83750 1.24118 1.03144 0.91555 0.92963 0.93044 0.96642 0.95743 0.92161 0.95019 0.88827 0.91261 0.88011 0.88177 0.90071 0.89214 0.85007 0.85915 0.81072 0.82221 0.80732 0.89835 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.39 9.11 -34.44 -0.31 -15.71 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.92 5.28 -27.89 -0.15 0.78 16 10 C 0.03 0.71 4.73 -3.83 -0.02 0.69 16 11 N -0.47 -8.70 6.16 -243.09 -1.50 -10.20 16 12 C 0.01 0.13 7.84 -3.08 -0.02 0.11 16 13 C 0.13 1.65 1.59 -142.76 -0.23 1.42 16 14 C -0.12 -1.04 8.26 -26.42 -0.22 -1.26 16 15 C 0.10 0.62 8.42 -9.98 -0.08 0.54 16 16 N -0.63 -7.06 3.69 -177.68 -0.66 -7.72 16 17 C 0.53 6.79 8.14 -10.99 -0.09 6.70 16 18 O -0.52 -9.36 16.18 5.56 0.09 -9.27 16 19 C 0.08 0.68 5.67 -5.20 -0.03 0.65 16 20 N -0.50 -5.21 2.08 -123.03 -0.26 -5.46 16 21 C 0.19 1.25 10.41 -16.56 -0.17 1.08 16 22 C -0.29 -1.62 10.07 -39.79 -0.40 -2.02 16 23 C 0.25 1.94 11.30 -17.00 -0.19 1.75 16 24 N -0.54 -7.30 10.48 -16.60 -0.17 -7.47 16 25 C 0.63 9.43 8.34 -88.17 -0.74 8.70 16 26 O -0.53 -9.93 16.74 4.96 0.08 -9.85 16 27 C 0.01 0.20 7.66 -3.09 -0.02 0.18 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 32 H 0.03 0.73 7.38 -51.92 -0.38 0.34 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 1.12 7.40 -51.93 -0.38 0.74 16 40 H 0.12 0.42 8.03 -51.93 -0.42 0.01 16 41 H 0.17 0.41 8.06 -52.49 -0.42 -0.02 16 42 H 0.16 0.30 8.06 -52.48 -0.42 -0.12 16 43 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.08 1.72 6.61 -51.93 -0.34 1.38 16 45 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -42.60 382.55 -10.25 -52.85 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.55 Total: -4.19 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.77 Total: 5.23 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -1.85 Total: -57.81 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.17 Total: -19.12 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -42.60 -10.25 -52.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.374 kcal (2) G-P(sol) polarization free energy of solvation -42.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds