Wall clock time and date at job start Tue Mar 31 2020 16:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48500 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00154 * 3 2 1 6 6 H 1.48496 * 109.46956 * 60.00177 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47505 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.48133 * 110.99976 * 189.99898 * 11 10 9 13 13 C 1.53132 * 85.89541 * 222.96186 * 12 11 10 14 14 C 1.52965 * 121.08026 * 258.11778 * 13 12 11 15 15 C 1.53643 * 82.96234 * 259.37844 * 14 13 12 16 16 N 1.46178 * 121.13810 * 148.39245 * 13 12 11 17 17 C 1.34776 * 136.20215 * 279.81676 * 16 13 12 18 18 O 1.21279 * 119.99712 * 359.63262 * 17 16 13 19 19 C 1.50698 * 120.00176 * 179.63634 * 17 16 13 20 20 N 1.46497 * 109.46853 * 180.02562 * 19 17 16 21 21 C 1.35864 * 119.93895 * 89.99759 * 20 19 17 22 22 C 1.36025 * 119.19223 * 179.71750 * 21 20 19 23 23 C 1.39806 * 119.08149 * 0.28293 * 22 21 20 24 24 N 1.31762 * 119.83247 * 359.97438 * 23 22 21 25 25 C 1.33525 * 120.81256 * 0.02562 * 24 23 22 26 26 O 1.21950 * 119.52244 * 179.97438 * 25 24 23 27 27 C 1.48122 * 111.00059 * 90.42530 * 11 10 9 28 28 H 0.96993 * 119.99239 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47084 * 60.00235 * 9 7 2 30 30 H 1.09003 * 109.47113 * 300.00813 * 9 7 2 31 31 H 1.08997 * 109.47451 * 59.99978 * 10 9 7 32 32 H 1.09008 * 109.47107 * 300.00010 * 10 9 7 33 33 H 1.09003 * 113.80070 * 108.71640 * 12 11 10 34 34 H 1.08992 * 113.80388 * 337.20757 * 12 11 10 35 35 H 1.09001 * 114.50271 * 145.85416 * 14 13 12 36 36 H 1.09006 * 114.16807 * 12.88294 * 14 13 12 37 37 H 1.09001 * 113.43043 * 219.65894 * 15 14 13 38 38 H 1.09000 * 113.47791 * 89.35892 * 15 14 13 39 39 H 1.08994 * 109.47180 * 59.99549 * 19 17 16 40 40 H 1.09000 * 109.46577 * 299.99465 * 19 17 16 41 41 H 1.08002 * 120.40671 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.46378 * 180.29726 * 22 21 20 43 43 H 1.08000 * 120.08595 * 179.97438 * 23 22 21 44 44 H 1.09001 * 113.80777 * 22.78981 * 27 11 10 45 45 H 1.09003 * 113.80148 * 251.27655 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4245 -6.0751 0.2389 13 6 1.6504 -6.7872 -0.8740 14 6 0.5920 -7.8426 -0.5490 15 6 1.7240 -8.8164 -0.9108 16 7 2.3062 -7.7560 -1.7503 17 6 3.0976 -7.7025 -2.8399 18 8 3.4106 -6.6291 -3.3099 19 6 3.5936 -8.9763 -3.4744 20 7 4.4288 -8.6515 -4.6332 21 6 5.7669 -8.4758 -4.4767 22 6 6.5290 -8.1803 -5.5641 23 6 5.9128 -8.0596 -6.8132 24 7 4.6111 -8.2327 -6.9214 25 6 3.8683 -8.5226 -5.8504 26 8 2.6653 -8.6775 -5.9774 27 6 1.2546 -5.3987 -1.3842 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6045 0.8894 32 1 2.8719 -3.6044 -0.8906 33 1 2.3064 -6.5344 1.2204 34 1 3.4643 -5.8663 -0.0126 35 1 -0.2532 -7.8621 -1.2370 36 1 0.2957 -7.8694 0.4997 37 1 1.3855 -9.6825 -1.4795 38 1 2.3501 -9.0894 -0.0614 39 1 2.7430 -9.5771 -3.7960 40 1 4.1819 -9.5382 -2.7490 41 1 6.2207 -8.5736 -3.5016 42 1 7.5953 -8.0411 -5.4639 43 1 6.5022 -7.8251 -7.6872 44 1 1.9444 -4.9876 -2.1212 45 1 0.2103 -5.3228 -1.6875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:58 Heat of formation + Delta-G solvation = 33.324056 kcal Electronic energy + Delta-G solvation = -28280.181404 eV Core-core repulsion = 24300.202850 eV Total energy + Delta-G solvation = -3979.978554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.93803 -42.32800 -39.91737 -38.28604 -38.15893 -36.53715 -35.46008 -32.80860 -32.24159 -31.37699 -29.17131 -28.39916 -27.36789 -25.93425 -25.43378 -24.63284 -23.57259 -22.75699 -21.66002 -19.48252 -19.45545 -18.74364 -18.65291 -18.03804 -17.90266 -17.22375 -17.14408 -16.83493 -16.52898 -16.30392 -15.87314 -15.80092 -15.27167 -14.96806 -14.83188 -14.41620 -14.20654 -13.96174 -13.87938 -13.69811 -13.47152 -13.38296 -13.22736 -13.10570 -12.93446 -12.58892 -12.49976 -12.45554 -12.30685 -12.12798 -11.93187 -11.60593 -11.46045 -11.06796 -11.03367 -10.69849 -10.63404 -9.92747 -9.82908 -9.60091 -8.26697 -6.39711 -0.37436 0.67589 1.12635 1.30682 1.34424 1.36323 1.49409 1.70089 2.34950 2.70309 2.92013 3.06030 3.11921 3.25601 3.32770 3.42122 3.55448 3.68176 3.73133 3.83572 3.95076 4.05217 4.11330 4.31458 4.35490 4.41057 4.43292 4.49601 4.55032 4.60121 4.61565 4.72705 4.82933 4.88082 4.96481 5.03865 5.20585 5.21852 5.27427 5.35547 5.42524 5.63765 5.68686 5.95671 6.17360 6.58110 6.63629 6.76604 6.86175 7.03965 7.29826 8.85950 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002768 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.056783 B =10111.842513 C =11604.808602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.043 3.957 10 C 0.052 3.948 11 N -0.483 5.483 12 C 0.020 3.980 13 C 0.132 3.868 14 C -0.114 4.114 15 C 0.109 3.891 16 N -0.635 5.635 17 C 0.518 3.482 18 O -0.586 6.586 19 C 0.087 3.913 20 N -0.502 5.502 21 C 0.184 3.816 22 C -0.281 4.281 23 C 0.247 3.753 24 N -0.605 5.605 25 C 0.618 3.382 26 O -0.597 6.597 27 C -0.003 4.003 28 H 0.265 0.735 29 H -0.023 1.023 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.187 0.813 41 H 0.222 0.778 42 H 0.207 0.793 43 H 0.212 0.788 44 H 0.043 0.957 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.437 -29.167 -1.738 33.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.006 3.994 10 C -0.076 4.076 11 N -0.205 5.205 12 C -0.109 4.109 13 C 0.046 3.954 14 C -0.151 4.151 15 C -0.011 4.011 16 N -0.369 5.369 17 C 0.308 3.692 18 O -0.465 6.465 19 C -0.039 4.039 20 N -0.215 5.215 21 C 0.049 3.951 22 C -0.305 4.305 23 C 0.069 3.931 24 N -0.339 5.339 25 C 0.321 3.679 26 O -0.477 6.477 27 C -0.133 4.133 28 H 0.074 0.926 29 H -0.004 1.004 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.150 0.850 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.204 0.796 41 H 0.238 0.762 42 H 0.224 0.776 43 H 0.228 0.772 44 H 0.062 0.938 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.561 -28.488 -2.467 32.088 hybrid contribution 0.870 1.735 -0.375 1.977 sum 15.431 -26.753 -2.841 31.014 Atomic orbital electron populations 1.70127 1.07926 1.27893 1.51166 1.26045 0.95850 1.03597 0.94373 0.85316 0.78947 0.78245 0.78027 1.18525 1.20445 1.19595 1.21641 0.93433 0.92337 1.51348 0.92325 1.18771 0.94002 0.92029 0.94641 1.22447 0.95703 0.90475 0.99018 1.68514 1.32991 1.01506 1.17532 1.24136 0.95366 0.91056 1.00369 1.23545 0.93055 0.89523 0.89294 1.23212 0.95369 0.91414 1.05142 1.23435 0.92133 0.91584 0.93956 1.49832 1.48129 1.13116 1.25831 1.20973 0.77109 0.91480 0.79651 1.90785 1.58878 1.33177 1.63706 1.22007 0.99468 0.94518 0.87875 1.46038 1.09510 1.55864 1.10092 1.23554 0.80823 0.86830 1.03939 1.22201 1.04778 1.12120 0.91428 1.24513 0.89084 0.79265 1.00209 1.69869 1.10267 1.25647 1.28167 1.18459 0.88711 0.79794 0.80961 1.90921 1.14864 1.56851 1.85058 1.24030 1.01372 0.96062 0.91839 0.92597 1.00442 0.98239 0.91021 0.96728 0.84953 0.91963 0.88594 0.85914 0.87035 0.85385 0.85225 0.79599 0.76178 0.77632 0.77151 0.93825 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.65 13.29 21.45 0.28 -59.37 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 46.31 29.54 68.60 2.03 48.34 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -33.49 9.11 25.60 0.23 -33.26 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.50 5.28 29.85 0.16 2.66 16 10 C 0.05 2.42 4.73 86.30 0.41 2.83 16 11 N -0.48 -18.46 6.16 -922.99 -5.68 -24.14 16 12 C 0.02 0.53 7.84 86.11 0.67 1.21 16 13 C 0.13 3.29 1.59 0.88 0.00 3.29 16 14 C -0.11 -1.69 8.26 30.80 0.25 -1.44 16 15 C 0.11 0.91 8.42 82.13 0.69 1.60 16 16 N -0.63 -13.03 3.69 -834.46 -3.08 -16.11 16 17 C 0.52 13.06 8.14 87.66 0.71 13.77 16 18 O -0.59 -22.23 16.18 -3.03 -0.05 -22.27 16 19 C 0.09 1.29 5.67 85.63 0.49 1.78 16 20 N -0.50 -9.96 2.08 -661.36 -1.37 -11.33 16 21 C 0.18 1.79 10.41 83.55 0.87 2.66 16 22 C -0.28 -2.15 10.07 22.13 0.22 -1.93 16 23 C 0.25 3.54 11.30 85.08 0.96 4.50 16 24 N -0.60 -16.96 10.48 -325.24 -3.41 -20.37 16 25 C 0.62 19.39 8.34 179.49 1.50 20.88 16 26 O -0.60 -24.48 16.74 -5.15 -0.09 -24.56 16 27 C 0.00 -0.12 7.66 86.11 0.66 0.54 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H -0.02 -1.47 8.14 -2.38 -0.02 -1.49 16 30 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.07 3.12 8.08 -2.39 -0.02 3.10 16 32 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 33 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.06 1.75 7.92 -2.39 -0.02 1.74 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.13 2.06 7.40 -2.39 -0.02 2.04 16 40 H 0.19 0.26 8.03 -2.39 -0.02 0.24 16 41 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.21 -0.37 8.06 -2.91 -0.02 -0.39 16 43 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.04 2.01 6.61 -2.39 -0.02 1.99 16 45 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -107.23 382.55 -2.08 -109.31 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 0.99 Total: 0.99 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 8.29 Total: 19.52 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -13.26 Total: -131.32 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.14 Total: -46.84 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -107.23 -2.08 -109.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.633 kcal (2) G-P(sol) polarization free energy of solvation -107.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds