Wall clock time and date at job start Tue Mar 31 2020 16:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48504 * 109.47003 * 239.99511 * 3 2 1 5 5 H 1.48501 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47390 * 119.99968 * 3 2 1 7 7 C 1.37881 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47055 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.48217 * 111.00149 * 190.00059 * 11 10 9 13 13 C 1.52663 * 85.71720 * 136.71954 * 12 11 10 14 14 C 1.48225 * 110.99415 * 289.72069 * 11 10 9 15 15 C 1.52238 * 122.19576 * 104.24929 * 13 12 11 16 16 N 1.47311 * 87.61130 * 99.84878 * 15 13 12 17 17 C 1.34782 * 135.87507 * 205.98244 * 16 15 13 18 18 O 1.21280 * 119.99943 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.46502 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.35869 * 119.93614 * 90.00153 * 20 19 17 22 22 C 1.36023 * 119.18951 * 179.97438 * 21 20 19 23 23 C 1.39808 * 119.08058 * 0.28347 * 22 21 20 24 24 N 1.31757 * 119.83230 * 359.40173 * 23 22 21 25 25 C 1.33522 * 120.81180 * 0.62746 * 24 23 22 26 26 O 1.21961 * 119.52033 * 179.67898 * 25 24 23 27 27 C 1.47321 * 88.25263 * 26.23890 * 16 15 13 28 28 H 0.96999 * 119.99683 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47312 * 59.99742 * 9 7 2 30 30 H 1.09000 * 109.46969 * 299.99829 * 9 7 2 31 31 H 1.08997 * 109.47632 * 60.00137 * 10 9 7 32 32 H 1.09000 * 109.47024 * 299.99711 * 10 9 7 33 33 H 1.09006 * 113.83258 * 22.52041 * 12 11 10 34 34 H 1.08996 * 113.94853 * 250.93507 * 12 11 10 35 35 H 1.08996 * 113.83221 * 109.07836 * 14 11 10 36 36 H 1.09004 * 113.83532 * 337.46960 * 14 11 10 37 37 H 1.09003 * 113.52858 * 345.16685 * 15 13 12 38 38 H 1.09000 * 113.59425 * 214.54293 * 15 13 12 39 39 H 1.09000 * 109.47312 * 59.99808 * 19 17 16 40 40 H 1.09004 * 109.47111 * 300.00364 * 19 17 16 41 41 H 1.08004 * 120.40161 * 359.95696 * 21 20 19 42 42 H 1.08002 * 120.45536 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.08430 * 179.72024 * 23 22 21 44 44 H 1.08999 * 113.52615 * 88.44411 * 27 16 15 45 45 H 1.08994 * 113.52744 * 219.07656 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4250 -6.0757 0.2427 13 6 1.3405 -6.5976 1.1819 14 6 0.8393 -5.1606 1.3032 15 6 0.4201 -7.7480 0.7984 16 7 1.2860 -8.6276 1.6025 17 6 1.5966 -9.9391 1.6059 18 8 1.0995 -10.6821 0.7863 19 6 2.5625 -10.4821 2.6273 20 7 2.7323 -11.9226 2.4213 21 6 3.7065 -12.3786 1.5912 22 6 3.8510 -13.7192 1.4114 23 6 2.9885 -14.5916 2.0819 24 7 2.0605 -14.1088 2.8831 25 6 1.9232 -12.7919 3.0553 26 8 1.0525 -12.3704 3.7979 27 6 1.6597 -7.4504 2.4056 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6047 -0.8877 33 1 3.3502 -5.7994 0.7485 34 1 2.5892 -6.7039 -0.6327 35 1 -0.2459 -5.0675 1.2612 36 1 1.2843 -4.6072 2.1302 37 1 0.4337 -7.9796 -0.2666 38 1 -0.5899 -7.6499 1.1963 39 1 2.1720 -10.3014 3.6287 40 1 3.5256 -9.9837 2.5176 41 1 4.3579 -11.6852 1.0801 42 1 4.6182 -14.1040 0.7560 43 1 3.0858 -15.6587 1.9475 44 1 0.9926 -7.2690 3.2483 45 1 2.7123 -7.4325 2.6879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:54 Heat of formation + Delta-G solvation = 68.809999 kcal Electronic energy + Delta-G solvation = -27479.177003 eV Core-core repulsion = 23500.737235 eV Total energy + Delta-G solvation = -3978.439768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22330 -41.32440 -39.19735 -37.44221 -37.04194 -35.83159 -33.41109 -31.72815 -31.21221 -29.92339 -28.10025 -26.44078 -26.14830 -25.78618 -25.09542 -23.79065 -22.81166 -20.41714 -19.82984 -18.80477 -18.44090 -18.10332 -17.70510 -17.22652 -16.65249 -16.29759 -16.13703 -15.76974 -15.25417 -15.12693 -14.86542 -14.64730 -14.45947 -14.33416 -13.76600 -13.36602 -13.34686 -13.18877 -12.75582 -12.55695 -12.46886 -12.27855 -12.04396 -11.77879 -11.45366 -11.26215 -11.15312 -10.91448 -10.80722 -10.73960 -10.58251 -10.15831 -10.02000 -9.97260 -9.44459 -9.24724 -9.04793 -8.93180 -8.44851 -8.33472 -6.05856 -4.09182 0.14852 1.26122 1.74994 2.12685 2.48079 3.28283 3.33578 3.35048 3.39774 3.80739 3.82328 3.87271 3.88570 4.12455 4.19676 4.31119 4.37094 4.46842 4.59075 4.70127 4.71968 4.94238 5.01745 5.11892 5.25954 5.29950 5.30500 5.44122 5.48591 5.50897 5.61886 5.72062 5.73057 5.86005 5.89810 5.93392 6.07791 6.21859 6.70878 6.98166 7.28777 7.31980 7.36550 7.63033 7.65694 7.75966 7.78326 7.97990 8.34411 8.97593 9.54970 11.05280 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038104 B = 0.001809 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.650004 B =15478.313113 C =15707.057645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.030 3.970 11 N -0.477 5.477 12 C 0.031 3.969 13 C -0.131 4.131 14 C 0.033 3.967 15 C 0.139 3.861 16 N -0.642 5.642 17 C 0.531 3.469 18 O -0.530 6.530 19 C 0.079 3.921 20 N -0.500 5.500 21 C 0.194 3.806 22 C -0.295 4.295 23 C 0.250 3.750 24 N -0.546 5.546 25 C 0.632 3.368 26 O -0.529 6.529 27 C 0.107 3.893 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.176 0.824 44 H 0.096 0.904 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -25.222 4.725 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.098 4.098 11 N -0.199 5.199 12 C -0.098 4.098 13 C -0.132 4.132 14 C -0.096 4.096 15 C 0.017 3.983 16 N -0.377 5.377 17 C 0.318 3.682 18 O -0.407 6.407 19 C -0.048 4.048 20 N -0.214 5.214 21 C 0.056 3.944 22 C -0.320 4.320 23 C 0.067 3.933 24 N -0.277 5.277 25 C 0.335 3.665 26 O -0.403 6.403 27 C -0.016 4.016 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.191 0.809 42 H 0.178 0.822 43 H 0.193 0.807 44 H 0.114 0.886 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.480 -25.673 4.795 27.784 hybrid contribution 1.608 1.638 0.197 2.304 sum 11.088 -24.035 4.992 26.936 Atomic orbital electron populations 1.69955 1.06030 1.26792 1.50292 1.24998 0.94844 0.99219 0.95212 0.86651 0.79578 0.83124 0.78582 1.20227 1.21235 1.20292 1.21131 0.92898 0.91032 1.51342 0.92847 1.19025 0.93844 0.90166 0.97835 1.22830 0.97469 0.90042 0.99460 1.68661 1.18858 1.03059 1.29349 1.23545 0.94317 0.94388 0.97545 1.23182 0.99010 0.94665 0.96352 1.23576 1.01846 0.90902 0.93282 1.22610 0.94391 0.83521 0.97732 1.49647 1.46915 1.05487 1.35682 1.20039 0.82813 0.80084 0.85244 1.90775 1.54118 1.55905 1.39854 1.21769 1.01835 0.79091 1.02086 1.46118 1.28452 1.08906 1.37905 1.22622 0.87769 0.97181 0.86803 1.21630 1.07894 0.92023 1.10480 1.23735 0.84551 1.01531 0.83505 1.69964 1.24194 1.10523 1.23023 1.18232 0.82479 0.83779 0.82028 1.91007 1.33160 1.77059 1.39079 1.23121 1.01750 0.81102 0.95621 0.92866 0.95754 0.96568 0.95359 0.91801 0.90991 0.89662 0.88937 0.90250 0.89616 0.88892 0.84885 0.85721 0.80934 0.82184 0.80736 0.88587 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.71 5.03 -27.89 -0.14 0.57 16 10 C 0.03 0.57 4.75 -3.82 -0.02 0.55 16 11 N -0.48 -7.66 6.26 -245.47 -1.54 -9.20 16 12 C 0.03 0.37 7.81 -3.27 -0.03 0.34 16 13 C -0.13 -1.36 1.47 -155.74 -0.23 -1.59 16 14 C 0.03 0.45 6.92 -3.26 -0.02 0.42 16 15 C 0.14 1.52 8.43 -7.53 -0.06 1.46 16 16 N -0.64 -6.58 3.69 -184.93 -0.68 -7.26 16 17 C 0.53 6.15 8.14 -10.98 -0.09 6.06 16 18 O -0.53 -8.48 17.20 5.56 0.10 -8.38 16 19 C 0.08 0.62 5.65 -5.19 -0.03 0.59 16 20 N -0.50 -4.69 2.08 -123.02 -0.26 -4.95 16 21 C 0.19 1.04 10.41 -16.56 -0.17 0.87 16 22 C -0.29 -1.25 10.07 -39.79 -0.40 -1.65 16 23 C 0.25 1.60 11.30 -17.00 -0.19 1.41 16 24 N -0.55 -6.59 10.48 -16.60 -0.17 -6.76 16 25 C 0.63 8.66 8.34 -88.18 -0.74 7.93 16 26 O -0.53 -9.34 16.74 4.95 0.08 -9.26 16 27 C 0.11 0.83 8.26 -7.38 -0.06 0.77 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.42 7.53 -51.93 -0.39 0.03 16 31 H 0.03 0.52 7.71 -51.93 -0.40 0.12 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.78 7.80 -51.93 -0.40 0.37 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.07 7.79 -51.93 -0.40 0.66 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.08 7.39 -51.93 -0.38 0.70 16 40 H 0.12 0.41 8.03 -51.93 -0.42 -0.01 16 41 H 0.17 0.25 8.06 -52.48 -0.42 -0.18 16 42 H 0.16 0.10 8.06 -52.49 -0.42 -0.32 16 43 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -39.84 383.38 -10.16 -50.00 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -6.59 Total: -5.16 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.59 Total: 4.62 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -1.91 Total: -53.65 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.84 -10.16 -50.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.810 kcal (2) G-P(sol) polarization free energy of solvation -39.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds