Wall clock time and date at job start Tue Mar 31 2020 16:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48504 * 109.47003 * 239.99511 * 3 2 1 5 5 H 1.48501 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47390 * 119.99968 * 3 2 1 7 7 C 1.37881 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47055 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.48217 * 111.00149 * 190.00059 * 11 10 9 13 13 C 1.52663 * 85.71720 * 136.71954 * 12 11 10 14 14 C 1.48225 * 110.99415 * 289.72069 * 11 10 9 15 15 C 1.52238 * 122.19576 * 104.24929 * 13 12 11 16 16 N 1.47311 * 87.61130 * 99.84878 * 15 13 12 17 17 C 1.34782 * 135.87507 * 205.98244 * 16 15 13 18 18 O 1.21280 * 119.99943 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.46502 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.35869 * 119.93614 * 90.00153 * 20 19 17 22 22 C 1.36023 * 119.18951 * 179.97438 * 21 20 19 23 23 C 1.39808 * 119.08058 * 0.28347 * 22 21 20 24 24 N 1.31757 * 119.83230 * 359.40173 * 23 22 21 25 25 C 1.33522 * 120.81180 * 0.62746 * 24 23 22 26 26 O 1.21961 * 119.52033 * 179.67898 * 25 24 23 27 27 C 1.47321 * 88.25263 * 26.23890 * 16 15 13 28 28 H 0.96999 * 119.99683 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47312 * 59.99742 * 9 7 2 30 30 H 1.09000 * 109.46969 * 299.99829 * 9 7 2 31 31 H 1.08997 * 109.47632 * 60.00137 * 10 9 7 32 32 H 1.09000 * 109.47024 * 299.99711 * 10 9 7 33 33 H 1.09006 * 113.83258 * 22.52041 * 12 11 10 34 34 H 1.08996 * 113.94853 * 250.93507 * 12 11 10 35 35 H 1.08996 * 113.83221 * 109.07836 * 14 11 10 36 36 H 1.09004 * 113.83532 * 337.46960 * 14 11 10 37 37 H 1.09003 * 113.52858 * 345.16685 * 15 13 12 38 38 H 1.09000 * 113.59425 * 214.54293 * 15 13 12 39 39 H 1.09000 * 109.47312 * 59.99808 * 19 17 16 40 40 H 1.09004 * 109.47111 * 300.00364 * 19 17 16 41 41 H 1.08004 * 120.40161 * 359.95696 * 21 20 19 42 42 H 1.08002 * 120.45536 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.08430 * 179.72024 * 23 22 21 44 44 H 1.08999 * 113.52615 * 88.44411 * 27 16 15 45 45 H 1.08994 * 113.52744 * 219.07656 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4250 -6.0757 0.2427 13 6 1.3405 -6.5976 1.1819 14 6 0.8393 -5.1606 1.3032 15 6 0.4201 -7.7480 0.7984 16 7 1.2860 -8.6276 1.6025 17 6 1.5966 -9.9391 1.6059 18 8 1.0995 -10.6821 0.7863 19 6 2.5625 -10.4821 2.6273 20 7 2.7323 -11.9226 2.4213 21 6 3.7065 -12.3786 1.5912 22 6 3.8510 -13.7192 1.4114 23 6 2.9885 -14.5916 2.0819 24 7 2.0605 -14.1088 2.8831 25 6 1.9232 -12.7919 3.0553 26 8 1.0525 -12.3704 3.7979 27 6 1.6597 -7.4504 2.4056 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6047 -0.8877 33 1 3.3502 -5.7994 0.7485 34 1 2.5892 -6.7039 -0.6327 35 1 -0.2459 -5.0675 1.2612 36 1 1.2843 -4.6072 2.1302 37 1 0.4337 -7.9796 -0.2666 38 1 -0.5899 -7.6499 1.1963 39 1 2.1720 -10.3014 3.6287 40 1 3.5256 -9.9837 2.5176 41 1 4.3579 -11.6852 1.0801 42 1 4.6182 -14.1040 0.7560 43 1 3.0858 -15.6587 1.9475 44 1 0.9926 -7.2690 3.2483 45 1 2.7123 -7.4325 2.6879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:53 Heat of formation + Delta-G solvation = 36.249689 kcal Electronic energy + Delta-G solvation = -27480.588924 eV Core-core repulsion = 23500.737235 eV Total energy + Delta-G solvation = -3979.851689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.90184 -42.23216 -40.15847 -38.26479 -38.07812 -36.51613 -35.36989 -32.85556 -32.20953 -30.98076 -29.08770 -27.27731 -27.18990 -27.14138 -25.73478 -24.65308 -24.21679 -21.89411 -20.76746 -19.45418 -19.28774 -18.73813 -18.57496 -18.44377 -17.87771 -17.21188 -17.09391 -16.71643 -16.50626 -16.24697 -15.88382 -15.66663 -15.64109 -14.95661 -14.82103 -14.55522 -14.23762 -14.09987 -13.87155 -13.44190 -13.40821 -13.36922 -13.22210 -13.02161 -12.85623 -12.53692 -12.43043 -12.30029 -12.11209 -11.91016 -11.75766 -11.50555 -11.30776 -11.25357 -10.96831 -10.67641 -10.54267 -9.93979 -9.60712 -9.55430 -8.18874 -6.30375 -0.34861 0.69797 1.11945 1.31446 1.41588 1.44226 1.52147 1.74005 2.41197 2.71996 2.90155 3.13502 3.14891 3.28275 3.31195 3.45700 3.58257 3.72780 3.82163 3.85319 4.06914 4.21633 4.34124 4.38185 4.40847 4.50621 4.53725 4.54723 4.59681 4.62899 4.66230 4.72600 4.79184 4.85216 4.95304 5.03708 5.10328 5.29921 5.45114 5.45325 5.53186 5.73241 5.82746 6.15218 6.32260 6.51482 6.64595 6.82310 6.87422 7.05716 7.39127 8.92688 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038104 B = 0.001809 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.650004 B =15478.313113 C =15707.057645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.048 3.952 11 N -0.508 5.508 12 C 0.040 3.960 13 C -0.112 4.112 14 C 0.029 3.971 15 C 0.129 3.871 16 N -0.640 5.640 17 C 0.526 3.474 18 O -0.585 6.585 19 C 0.083 3.917 20 N -0.502 5.502 21 C 0.184 3.816 22 C -0.280 4.280 23 C 0.248 3.752 24 N -0.604 5.604 25 C 0.617 3.383 26 O -0.598 6.598 27 C 0.119 3.881 28 H 0.263 0.737 29 H -0.015 1.015 30 H -0.004 1.004 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.182 0.818 41 H 0.221 0.779 42 H 0.207 0.793 43 H 0.213 0.787 44 H 0.109 0.891 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.736 -25.729 4.766 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.080 4.080 11 N -0.230 5.230 12 C -0.088 4.088 13 C -0.114 4.114 14 C -0.100 4.100 15 C 0.007 3.993 16 N -0.374 5.374 17 C 0.315 3.685 18 O -0.465 6.465 19 C -0.042 4.042 20 N -0.215 5.215 21 C 0.048 3.952 22 C -0.304 4.304 23 C 0.071 3.929 24 N -0.339 5.339 25 C 0.321 3.679 26 O -0.478 6.478 27 C -0.003 4.003 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.014 0.986 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.200 0.800 41 H 0.237 0.763 42 H 0.224 0.776 43 H 0.229 0.771 44 H 0.127 0.873 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.736 -26.197 4.804 29.967 hybrid contribution 0.334 1.715 0.054 1.748 sum 14.070 -24.482 4.858 28.651 Atomic orbital electron populations 1.70105 1.07863 1.27760 1.51484 1.25971 0.95712 1.03364 0.94751 0.85507 0.78234 0.78094 0.79235 1.19295 1.21186 1.18859 1.21619 0.93594 0.92218 1.50753 0.91901 1.18870 0.94258 0.92283 0.94892 1.22448 0.95931 0.89784 0.99801 1.68593 1.20358 1.02704 1.31369 1.23594 0.94809 0.92202 0.98234 1.22845 0.97963 0.92826 0.97736 1.23575 1.01040 0.93212 0.92201 1.22648 0.95067 0.84407 0.97220 1.49685 1.46282 1.05757 1.35681 1.20727 0.82776 0.79829 0.85120 1.90745 1.56243 1.57226 1.42282 1.21975 1.03419 0.78620 1.00208 1.46028 1.28487 1.09044 1.37903 1.23569 0.86996 0.98868 0.85729 1.22205 1.07463 0.91406 1.09293 1.24521 0.83001 1.03855 0.81564 1.69877 1.27424 1.10219 1.26341 1.18471 0.82539 0.84830 0.82098 1.90926 1.36239 1.78207 1.42419 1.23246 1.04493 0.78259 0.94264 0.92870 0.99690 0.98590 0.94013 0.92262 0.88696 0.89315 0.90318 0.89865 0.91165 0.88821 0.85402 0.80040 0.76261 0.77593 0.77056 0.87274 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.76 5.03 29.85 0.15 1.91 16 10 C 0.05 1.85 4.75 86.30 0.41 2.26 16 11 N -0.51 -16.08 6.26 -930.52 -5.82 -21.90 16 12 C 0.04 0.85 7.81 85.94 0.67 1.52 16 13 C -0.11 -2.13 1.47 -52.72 -0.08 -2.21 16 14 C 0.03 0.77 6.92 85.94 0.59 1.36 16 15 C 0.13 2.77 8.43 83.68 0.71 3.48 16 16 N -0.64 -11.98 3.69 -857.38 -3.17 -15.15 16 17 C 0.53 11.52 8.14 87.66 0.71 12.24 16 18 O -0.58 -18.84 17.20 -3.03 -0.05 -18.89 16 19 C 0.08 1.11 5.65 85.63 0.48 1.60 16 20 N -0.50 -8.65 2.08 -661.33 -1.37 -10.02 16 21 C 0.18 1.29 10.41 83.55 0.87 2.16 16 22 C -0.28 -1.26 10.07 22.13 0.22 -1.04 16 23 C 0.25 2.70 11.30 85.08 0.96 3.67 16 24 N -0.60 -14.86 10.48 -325.24 -3.41 -18.27 16 25 C 0.62 17.45 8.34 179.50 1.50 18.95 16 26 O -0.60 -22.68 16.74 -5.19 -0.09 -22.76 16 27 C 0.12 1.45 8.26 83.77 0.69 2.15 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.00 -0.23 7.53 -2.39 -0.02 -0.25 16 31 H 0.04 1.46 7.71 -2.39 -0.02 1.44 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 1.64 7.80 -2.38 -0.02 1.62 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.08 2.14 7.79 -2.39 -0.02 2.13 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.13 1.92 7.39 -2.39 -0.02 1.90 16 40 H 0.18 0.20 8.03 -2.38 -0.02 0.18 16 41 H 0.22 -0.69 8.06 -2.91 -0.02 -0.71 16 42 H 0.21 -1.00 8.06 -2.91 -0.02 -1.02 16 43 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -96.17 383.38 -2.02 -98.19 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 0.99 Total: 0.70 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 8.59 Total: 18.85 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -13.49 Total: -121.15 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.14 Total: -41.65 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -96.17 -2.02 -98.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.435 kcal (2) G-P(sol) polarization free energy of solvation -96.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds