Wall clock time and date at job start Tue Mar 31 2020 16:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33819 * 126.08364 * 2 1 4 4 H 0.96998 * 124.98146 * 359.72513 * 3 2 1 5 5 N 1.39918 * 110.02814 * 179.73877 * 3 2 1 6 6 C 1.31919 * 109.06190 * 0.02562 * 5 3 2 7 7 C 1.41386 * 134.39378 * 180.02562 * 6 5 3 8 8 C 1.35185 * 119.93220 * 179.97438 * 7 6 5 9 9 C 1.41046 * 121.65573 * 359.97438 * 8 7 6 10 10 C 1.47518 * 119.39602 * 180.02562 * 9 8 7 11 11 O 1.21600 * 119.99911 * 312.66481 * 10 9 8 12 12 N 1.34773 * 119.99739 * 132.66571 * 10 9 8 13 13 C 1.46498 * 120.00459 * 6.07632 * 12 10 9 14 14 C 1.52995 * 109.47175 * 97.57701 * 13 12 10 15 15 O 1.42890 * 109.47388 * 66.83209 * 14 13 12 16 16 C 1.46501 * 119.99555 * 186.07460 * 12 10 9 17 17 C 1.53002 * 109.47114 * 90.00229 * 16 12 10 18 18 N 1.46501 * 109.47114 * 180.02562 * 17 16 12 19 19 C 1.36936 * 120.00085 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99852 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00178 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99455 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47090 * 59.99970 * 23 21 19 25 25 H 1.48505 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47082 * 299.99779 * 23 21 19 27 27 C 1.38221 * 121.21357 * 0.02562 * 9 8 7 28 28 C 1.38547 * 126.08272 * 179.70164 * 2 1 3 29 29 H 1.09007 * 109.47341 * 90.02311 * 1 2 3 30 30 H 1.09007 * 109.47147 * 210.01671 * 1 2 3 31 31 H 1.08992 * 109.47121 * 330.01883 * 1 2 3 32 32 H 1.07998 * 120.03594 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.17494 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.46950 * 217.58062 * 13 12 10 35 35 H 1.09004 * 109.46618 * 337.57260 * 13 12 10 36 36 H 1.09000 * 109.46626 * 186.83417 * 14 13 12 37 37 H 1.08996 * 109.47300 * 306.82884 * 14 13 12 38 38 H 0.96697 * 114.00208 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.47171 * 210.00169 * 16 12 10 40 40 H 1.09002 * 109.47427 * 329.99900 * 16 12 10 41 41 H 1.08998 * 109.46802 * 299.99326 * 17 16 12 42 42 H 1.08997 * 109.47529 * 59.99893 * 17 16 12 43 43 H 0.97006 * 119.99752 * 359.97438 * 18 17 16 44 44 H 0.96998 * 119.99403 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.33271 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 -0.0038 5 7 3.6397 0.6945 0.0060 6 6 3.7089 -0.6229 0.0092 7 6 4.7696 -1.5576 0.0158 8 6 4.5011 -2.8825 0.0182 9 6 3.1774 -3.3696 0.0147 10 6 2.9417 -4.8258 0.0181 11 8 3.5519 -5.5423 -0.7520 12 7 2.0500 -5.3621 0.8746 13 6 1.2191 -4.4899 1.7083 14 6 -0.1518 -4.3125 1.0527 15 8 -0.8496 -5.5595 1.0627 16 6 1.9116 -6.8173 0.9719 17 6 2.8709 -7.3507 2.0379 18 7 2.7330 -8.8059 2.1347 19 6 3.4970 -9.5082 3.0282 20 1 4.2015 -8.9892 3.6612 21 6 3.3659 -10.8871 3.1204 22 7 2.5069 -11.5194 2.3492 23 14 4.4086 -11.8450 4.3387 24 1 4.1274 -11.3650 5.7156 25 1 4.0815 -13.2903 4.2412 26 1 5.8463 -11.6413 4.0273 27 6 2.0970 -2.5075 0.0082 28 6 2.3229 -1.1197 0.0058 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8899 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 5.7933 -1.2136 0.0190 33 1 5.3207 -3.5858 0.0228 34 1 1.0953 -4.9395 2.6936 35 1 1.7016 -3.5178 1.8106 36 1 -0.7262 -3.5702 1.6069 37 1 -0.0218 -3.9772 0.0238 38 1 -1.7288 -5.5214 0.6621 39 1 0.8870 -7.0672 1.2474 40 1 2.1498 -7.2701 0.0094 41 1 3.8954 -7.1008 1.7623 42 1 2.6328 -6.8979 3.0003 43 1 2.1004 -9.2721 1.5659 44 1 2.4150 -12.4829 2.4139 45 1 1.0894 -2.8960 0.0061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279764365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:45 Heat of formation + Delta-G solvation = 36.685837 kcal Electronic energy + Delta-G solvation = -28352.709626 eV Core-core repulsion = 24372.876850 eV Total energy + Delta-G solvation = -3979.832776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79335 -40.08173 -37.33074 -36.98961 -35.47289 -34.33136 -33.52366 -31.62502 -31.12258 -30.52146 -29.44655 -27.97054 -26.92695 -24.54782 -23.81459 -23.26021 -22.42457 -21.32333 -20.40213 -19.29167 -18.05485 -17.99573 -17.30574 -17.06218 -16.60120 -16.03576 -15.69447 -15.41681 -14.95957 -14.65792 -14.45965 -14.15854 -13.98577 -13.67630 -13.57857 -13.50226 -13.20029 -13.04405 -13.01127 -12.87011 -12.55937 -12.28025 -12.02756 -11.76716 -11.63270 -11.12430 -10.86133 -10.81493 -10.72075 -10.52378 -10.42525 -10.12405 -10.05912 -9.73020 -9.58090 -9.13042 -8.76648 -8.41402 -7.87100 -6.82090 -5.66324 -2.94793 0.16190 1.32436 1.96191 2.22078 2.84794 3.12039 3.51608 3.55205 3.56923 3.59326 3.83836 3.99678 4.04669 4.31327 4.49066 4.55491 4.69958 4.79794 4.85942 4.91729 5.01313 5.06845 5.13091 5.17416 5.27217 5.30648 5.34745 5.64581 5.68097 5.76948 5.90438 6.02817 6.03894 6.09533 6.18560 6.28067 6.36062 6.48551 6.62524 6.68786 6.88971 7.06234 7.20087 7.45672 7.63077 7.78959 8.35659 8.52604 9.63071 10.20953 10.56316 11.56706 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002645 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.382101 B =10583.856513 C =11496.111460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.123 3.877 3 N -0.423 5.423 4 H 0.442 0.558 5 N -0.309 5.309 6 C 0.121 3.879 7 C -0.110 4.110 8 C -0.032 4.032 9 C -0.152 4.152 10 C 0.555 3.445 11 O -0.526 6.526 12 N -0.593 5.593 13 C 0.095 3.905 14 C 0.054 3.946 15 O -0.558 6.558 16 C 0.109 3.891 17 C 0.143 3.857 18 N -0.729 5.729 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.020 4.020 28 C -0.212 4.212 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.377 0.623 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 29.979 -5.317 31.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.017 4.017 3 N -0.123 5.123 4 H 0.286 0.714 5 N -0.136 5.136 6 C -0.034 4.034 7 C -0.131 4.131 8 C -0.055 4.055 9 C -0.156 4.156 10 C 0.343 3.657 11 O -0.403 6.403 12 N -0.325 5.325 13 C -0.028 4.028 14 C -0.025 4.025 15 O -0.363 6.363 16 C -0.013 4.013 17 C 0.015 3.985 18 N -0.374 5.374 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.040 4.040 28 C -0.222 4.222 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.780 30.448 -5.301 31.871 hybrid contribution -0.772 -0.580 0.261 1.000 sum -8.552 29.869 -5.040 31.475 Atomic orbital electron populations 1.20610 0.86088 1.04773 1.04256 1.21316 0.94363 0.87222 0.98805 1.46272 1.04849 1.08674 1.52535 0.71357 1.77679 0.92506 1.12282 1.31149 1.21028 0.94152 0.90823 0.97352 1.19760 0.96980 0.90552 1.05856 1.20600 0.95552 0.95056 0.94290 1.19584 0.94133 0.92993 1.08921 1.18307 0.79530 0.87295 0.80541 1.90832 1.48424 1.62073 1.38939 1.47727 1.37674 1.07604 1.39526 1.21913 0.89003 0.96347 0.95581 1.22868 0.93655 0.86720 0.99241 1.86632 1.33558 1.31937 1.84168 1.21780 1.01315 0.77038 1.01163 1.20906 0.96238 0.86403 0.94990 1.42192 1.48392 1.00235 1.46540 1.19171 1.15111 0.89560 1.12829 0.91308 1.24740 0.99851 0.96459 1.00057 1.69661 1.38619 1.08105 1.41901 0.86244 0.79936 0.79051 0.80823 1.21332 1.21705 1.21288 1.21097 0.98876 0.90011 0.94045 1.19173 0.92471 0.93434 1.17118 0.89173 0.88950 0.90210 0.84762 0.84510 0.89075 0.88134 0.92655 0.93319 0.77622 0.88934 0.89943 0.96254 0.96561 0.78221 0.93520 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 10.44 36.00 0.38 0.17 16 2 C 0.12 0.78 7.28 -81.61 -0.59 0.19 16 3 N -0.42 -2.84 7.17 33.88 0.24 -2.60 16 4 H 0.44 1.27 8.96 -182.74 -1.64 -0.37 16 5 N -0.31 -3.34 12.69 33.30 0.42 -2.92 16 6 C 0.12 1.38 7.49 -82.98 -0.62 0.76 16 7 C -0.11 -1.24 10.05 -39.47 -0.40 -1.63 16 8 C -0.03 -0.40 9.51 -39.60 -0.38 -0.77 16 9 C -0.15 -1.95 5.04 -105.06 -0.53 -2.48 16 10 C 0.56 9.01 7.20 -12.48 -0.09 8.92 16 11 O -0.53 -10.81 16.55 5.28 0.09 -10.73 16 12 N -0.59 -8.98 2.48 -174.92 -0.43 -9.41 16 13 C 0.10 1.04 5.33 -4.05 -0.02 1.02 16 14 C 0.05 0.44 6.46 37.16 0.24 0.68 16 15 O -0.56 -5.78 11.90 -35.23 -0.42 -6.20 16 16 C 0.11 2.04 5.42 -4.04 -0.02 2.02 16 17 C 0.14 3.21 6.58 -4.04 -0.03 3.18 16 18 N -0.73 -19.87 5.60 -59.91 -0.34 -20.21 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.32 13.06 55.49 0.72 -28.59 16 23 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.02 -0.20 7.45 -38.69 -0.29 -0.48 16 28 C -0.21 -2.04 6.25 -105.23 -0.66 -2.70 16 29 H 0.09 0.11 8.14 -51.92 -0.42 -0.31 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.10 0.92 5.15 -51.93 -0.27 0.66 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.36 6.10 -51.93 -0.32 0.04 16 38 H 0.38 2.16 9.12 45.56 0.42 2.57 16 39 H 0.09 1.70 6.49 -51.93 -0.34 1.36 16 40 H 0.08 1.71 7.35 -51.93 -0.38 1.33 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.89 7.67 -40.82 -0.31 10.58 16 44 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.14 1.06 3.71 -52.49 -0.19 0.87 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -39.96 374.10 -8.73 -48.69 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.38 Total: 6.89 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.26 Total: 1.19 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.62 Total: -63.73 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.33 Total: -16.93 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.96 -8.73 -48.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279764365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.377 kcal (2) G-P(sol) polarization free energy of solvation -39.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds