Wall clock time and date at job start Tue Mar 31 2020 16:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33819 * 126.08364 * 2 1 4 4 H 0.96998 * 124.98146 * 359.72513 * 3 2 1 5 5 N 1.39918 * 110.02814 * 179.73877 * 3 2 1 6 6 C 1.31919 * 109.06190 * 0.02562 * 5 3 2 7 7 C 1.41386 * 134.39378 * 180.02562 * 6 5 3 8 8 C 1.35185 * 119.93220 * 179.97438 * 7 6 5 9 9 C 1.41046 * 121.65573 * 359.97438 * 8 7 6 10 10 C 1.47518 * 119.39602 * 180.02562 * 9 8 7 11 11 O 1.21600 * 119.99911 * 312.66481 * 10 9 8 12 12 N 1.34773 * 119.99739 * 132.66571 * 10 9 8 13 13 C 1.46498 * 120.00459 * 6.07632 * 12 10 9 14 14 C 1.52995 * 109.47175 * 97.57701 * 13 12 10 15 15 O 1.42890 * 109.47388 * 66.83209 * 14 13 12 16 16 C 1.46501 * 119.99555 * 186.07460 * 12 10 9 17 17 C 1.53002 * 109.47114 * 90.00229 * 16 12 10 18 18 N 1.46501 * 109.47114 * 180.02562 * 17 16 12 19 19 C 1.36936 * 120.00085 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99852 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00178 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99455 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47090 * 59.99970 * 23 21 19 25 25 H 1.48505 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47082 * 299.99779 * 23 21 19 27 27 C 1.38221 * 121.21357 * 0.02562 * 9 8 7 28 28 C 1.38547 * 126.08272 * 179.70164 * 2 1 3 29 29 H 1.09007 * 109.47341 * 90.02311 * 1 2 3 30 30 H 1.09007 * 109.47147 * 210.01671 * 1 2 3 31 31 H 1.08992 * 109.47121 * 330.01883 * 1 2 3 32 32 H 1.07998 * 120.03594 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.17494 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.46950 * 217.58062 * 13 12 10 35 35 H 1.09004 * 109.46618 * 337.57260 * 13 12 10 36 36 H 1.09000 * 109.46626 * 186.83417 * 14 13 12 37 37 H 1.08996 * 109.47300 * 306.82884 * 14 13 12 38 38 H 0.96697 * 114.00208 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.47171 * 210.00169 * 16 12 10 40 40 H 1.09002 * 109.47427 * 329.99900 * 16 12 10 41 41 H 1.08998 * 109.46802 * 299.99326 * 17 16 12 42 42 H 1.08997 * 109.47529 * 59.99893 * 17 16 12 43 43 H 0.97006 * 119.99752 * 359.97438 * 18 17 16 44 44 H 0.96998 * 119.99403 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.33271 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 -0.0038 5 7 3.6397 0.6945 0.0060 6 6 3.7089 -0.6229 0.0092 7 6 4.7696 -1.5576 0.0158 8 6 4.5011 -2.8825 0.0182 9 6 3.1774 -3.3696 0.0147 10 6 2.9417 -4.8258 0.0181 11 8 3.5519 -5.5423 -0.7520 12 7 2.0500 -5.3621 0.8746 13 6 1.2191 -4.4899 1.7083 14 6 -0.1518 -4.3125 1.0527 15 8 -0.8496 -5.5595 1.0627 16 6 1.9116 -6.8173 0.9719 17 6 2.8709 -7.3507 2.0379 18 7 2.7330 -8.8059 2.1347 19 6 3.4970 -9.5082 3.0282 20 1 4.2015 -8.9892 3.6612 21 6 3.3659 -10.8871 3.1204 22 7 2.5069 -11.5194 2.3492 23 14 4.4086 -11.8450 4.3387 24 1 4.1274 -11.3650 5.7156 25 1 4.0815 -13.2903 4.2412 26 1 5.8463 -11.6413 4.0273 27 6 2.0970 -2.5075 0.0082 28 6 2.3229 -1.1197 0.0058 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8899 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 5.7933 -1.2136 0.0190 33 1 5.3207 -3.5858 0.0228 34 1 1.0953 -4.9395 2.6936 35 1 1.7016 -3.5178 1.8106 36 1 -0.7262 -3.5702 1.6069 37 1 -0.0218 -3.9772 0.0238 38 1 -1.7288 -5.5214 0.6621 39 1 0.8870 -7.0672 1.2474 40 1 2.1498 -7.2701 0.0094 41 1 3.8954 -7.1008 1.7623 42 1 2.6328 -6.8979 3.0003 43 1 2.1004 -9.2721 1.5659 44 1 2.4150 -12.4829 2.4139 45 1 1.0894 -2.8960 0.0061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279764365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:44 Heat of formation + Delta-G solvation = 4.496726 kcal Electronic energy + Delta-G solvation = -28354.105450 eV Core-core repulsion = 24372.876850 eV Total energy + Delta-G solvation = -3981.228601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50507 -41.21808 -38.21833 -37.93699 -36.98602 -35.89550 -34.27864 -33.40922 -31.88666 -31.57950 -30.49060 -29.15235 -27.92212 -25.78983 -25.17227 -24.16749 -23.71930 -22.79633 -21.15577 -20.39365 -19.22419 -18.80765 -18.70769 -18.17889 -17.42586 -17.29772 -16.75901 -16.36034 -16.19637 -15.87668 -15.61111 -15.33330 -15.19060 -14.93399 -14.78867 -14.67631 -14.35645 -14.03816 -13.78079 -13.69218 -13.30330 -13.12486 -13.08710 -12.91592 -12.86963 -12.62186 -12.55722 -12.49013 -12.16195 -12.11954 -11.86813 -11.43611 -11.18815 -10.96799 -10.91197 -10.75883 -9.93138 -9.69988 -9.05930 -8.64024 -7.96288 -5.27428 -0.53530 0.42543 1.27375 1.45839 1.50914 1.56738 1.66385 1.72178 1.96965 2.56712 2.71834 3.10386 3.35974 3.40419 3.48329 3.56364 3.84164 3.91141 4.07701 4.11196 4.18790 4.22466 4.29182 4.37219 4.44127 4.49323 4.52183 4.60310 4.69514 4.75346 4.77914 4.92201 5.03311 5.08501 5.11416 5.14800 5.23419 5.30253 5.42104 5.43818 5.55608 5.68456 6.18537 6.24720 6.39758 6.50505 7.04789 7.12227 7.30480 8.02050 8.28727 9.27084 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002645 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.382101 B =10583.856513 C =11496.111460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.164 3.836 3 N -0.410 5.410 4 H 0.460 0.540 5 N -0.344 5.344 6 C 0.103 3.897 7 C -0.118 4.118 8 C -0.043 4.043 9 C -0.188 4.188 10 C 0.555 3.445 11 O -0.585 6.585 12 N -0.590 5.590 13 C 0.085 3.915 14 C 0.055 3.945 15 O -0.591 6.591 16 C 0.129 3.871 17 C 0.150 3.850 18 N -0.741 5.741 19 C -0.253 4.253 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.980 3.020 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.018 3.982 28 C -0.242 4.242 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.100 0.900 40 H 0.055 0.945 41 H -0.002 1.002 42 H 0.027 0.973 43 H 0.375 0.625 44 H 0.254 0.746 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 33.003 -4.328 35.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 N -0.111 5.111 4 H 0.308 0.692 5 N -0.172 5.172 6 C -0.051 4.051 7 C -0.139 4.139 8 C -0.066 4.066 9 C -0.193 4.193 10 C 0.345 3.655 11 O -0.466 6.466 12 N -0.321 5.321 13 C -0.037 4.037 14 C -0.023 4.023 15 O -0.399 6.399 16 C 0.006 3.994 17 C 0.022 3.978 18 N -0.384 5.384 19 C -0.384 4.384 20 H 0.090 0.910 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.808 3.192 24 H -0.199 1.199 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.003 4.003 28 C -0.252 4.252 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.044 0.956 43 H 0.207 0.793 44 H 0.063 0.937 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.441 33.575 -4.286 35.421 hybrid contribution -0.088 -1.287 -0.061 1.292 sum -10.530 32.288 -4.347 34.238 Atomic orbital electron populations 1.20959 0.82067 1.07079 1.06063 1.22033 0.96243 0.85652 0.93884 1.46359 1.03789 1.09975 1.51019 0.69178 1.77627 0.94836 1.11971 1.32779 1.21176 0.95122 0.91297 0.97472 1.19786 0.97777 0.90186 1.06176 1.20499 0.95345 0.95367 0.95390 1.19249 0.95238 0.90953 1.13825 1.18868 0.78438 0.88606 0.79551 1.90785 1.50537 1.63798 1.41438 1.47765 1.38191 1.06357 1.39769 1.22296 0.90393 0.96137 0.94834 1.22930 0.92099 0.87026 1.00223 1.86565 1.35212 1.33458 1.84701 1.21301 1.00300 0.79514 0.98286 1.20941 0.96052 0.84228 0.96581 1.42367 1.47964 1.02056 1.46057 1.19565 1.15373 0.90319 1.13183 0.90971 1.25656 1.01353 0.97402 1.02204 1.69827 1.40208 1.08182 1.43572 0.85126 0.78148 0.77189 0.78754 1.19887 1.21597 1.20648 1.21244 0.98937 0.89842 0.90240 1.19402 0.92389 0.94039 1.19329 0.87288 0.87251 0.87398 0.84054 0.86017 0.89874 0.86170 0.88034 0.92237 0.75348 0.88170 0.92651 0.98411 0.95555 0.79268 0.93738 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.23 10.44 71.23 0.74 0.97 16 2 C 0.16 1.37 7.28 42.33 0.31 1.68 16 3 N -0.41 -4.09 7.17 -46.73 -0.34 -4.43 16 4 H 0.46 0.84 8.96 -213.44 -1.91 -1.08 16 5 N -0.34 -6.94 12.69 -48.55 -0.62 -7.55 16 6 C 0.10 2.28 7.49 42.27 0.32 2.60 16 7 C -0.12 -2.77 10.05 22.34 0.22 -2.54 16 8 C -0.04 -1.14 9.51 22.25 0.21 -0.93 16 9 C -0.19 -4.93 5.04 -20.15 -0.10 -5.03 16 10 C 0.55 18.89 7.20 86.69 0.62 19.51 16 11 O -0.58 -25.96 16.55 -4.03 -0.07 -26.03 16 12 N -0.59 -18.16 2.48 -825.57 -2.04 -20.20 16 13 C 0.09 1.71 5.33 86.38 0.46 2.17 16 14 C 0.06 0.70 6.46 71.98 0.46 1.16 16 15 O -0.59 -10.88 11.90 -148.98 -1.77 -12.66 16 16 C 0.13 5.05 5.42 86.38 0.47 5.52 16 17 C 0.15 7.00 6.58 86.38 0.57 7.56 16 18 N -0.74 -41.84 5.60 -343.45 -1.92 -43.76 16 19 C -0.25 -15.28 9.99 84.04 0.84 -14.44 16 20 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -61.88 13.06 21.65 0.28 -61.60 16 23 Si 0.98 48.22 29.55 68.60 2.03 50.24 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 27 C 0.02 0.32 7.45 22.85 0.17 0.49 16 28 C -0.24 -4.02 6.25 -20.26 -0.13 -4.14 16 29 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 31 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 35 H 0.12 1.92 5.15 -2.38 -0.01 1.91 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 0.63 6.10 -2.39 -0.01 0.62 16 38 H 0.40 3.48 9.12 -74.06 -0.68 2.81 16 39 H 0.10 3.76 6.49 -2.39 -0.02 3.74 16 40 H 0.05 2.46 7.35 -2.39 -0.02 2.44 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.38 22.17 7.67 -92.70 -0.71 21.46 16 44 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.16 1.90 3.71 -2.91 -0.01 1.89 16 Total: -1.00 -91.97 374.10 -1.03 -93.01 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -2.23 Total: 22.39 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.64 Total: 10.58 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -4.64 Total: -137.54 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.84 Total: -38.68 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -91.97 -1.03 -93.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279764365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.504 kcal (2) G-P(sol) polarization free energy of solvation -91.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds