Wall clock time and date at job start Tue Mar 31 2020 16:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48490 * 109.46937 * 269.99773 * 3 2 1 5 5 H 1.48492 * 109.46933 * 30.00250 * 3 2 1 6 6 H 1.48498 * 109.46810 * 149.99888 * 3 2 1 7 7 C 1.38809 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00236 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99733 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46980 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46852 * 180.02562 * 12 11 10 14 14 C 1.42896 * 113.99747 * 180.02562 * 13 12 11 15 15 C 1.53010 * 109.47136 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46877 * 64.99580 * 15 14 13 17 17 C 1.34772 * 119.99555 * 180.02562 * 16 15 14 18 18 O 1.21589 * 120.00108 * 0.02562 * 17 16 15 19 19 C 1.47585 * 119.99929 * 179.97438 * 17 16 15 20 20 C 1.40084 * 120.35574 * 359.97372 * 19 17 16 21 21 N 1.31167 * 121.11938 * 180.02562 * 20 19 17 22 22 C 1.33367 * 121.67447 * 0.02562 * 21 20 19 23 23 C 1.41845 * 133.16684 * 179.97438 * 22 21 20 24 24 C 1.34452 * 107.96006 * 180.02562 * 23 22 21 25 25 N 1.36545 * 109.71370 * 0.02562 * 24 23 22 26 26 H 0.97003 * 125.59715 * 180.02562 * 25 24 23 27 27 C 1.37852 * 108.80200 * 0.02562 * 25 24 23 28 28 C 1.38731 * 133.56557 * 179.97438 * 27 25 24 29 29 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00285 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47417 * 60.00330 * 10 9 7 32 32 H 1.09000 * 109.47194 * 300.00249 * 10 9 7 33 33 H 1.09000 * 109.46828 * 59.99809 * 11 10 9 34 34 H 1.09000 * 109.47058 * 299.99956 * 11 10 9 35 35 H 1.09000 * 109.47067 * 60.00423 * 12 11 10 36 36 H 1.09000 * 109.47142 * 299.99847 * 12 11 10 37 37 H 1.09003 * 109.47784 * 59.99525 * 14 13 12 38 38 H 1.09000 * 109.46939 * 299.99162 * 14 13 12 39 39 H 1.08992 * 109.46738 * 304.99923 * 15 14 13 40 40 H 1.08995 * 109.47238 * 184.99667 * 15 14 13 41 41 H 0.96999 * 120.00277 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.44152 * 0.05205 * 20 19 17 43 43 H 1.08001 * 126.02266 * 0.04472 * 23 22 21 44 44 H 1.08002 * 125.14431 * 180.26568 * 24 23 22 45 45 H 1.07998 * 120.91264 * 0.04370 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 6 1.8286 -6.1447 0.0029 13 8 0.8999 -7.2309 0.0029 14 6 1.5145 -8.5209 0.0041 15 6 0.4314 -9.6018 0.0046 16 7 -0.3263 -9.5344 -1.2475 17 6 -1.3380 -10.3966 -1.4700 18 8 -1.6221 -11.2300 -0.6315 19 6 -2.1017 -10.3284 -2.7311 20 6 -1.7817 -9.3703 -3.7016 21 7 -2.4508 -9.2960 -4.8273 22 6 -3.4607 -10.1241 -5.0977 23 6 -4.3325 -10.2611 -6.2082 24 6 -5.1782 -11.2737 -5.9488 25 7 -4.8998 -11.8035 -4.7215 26 1 -5.3690 -12.5441 -4.3066 27 6 -3.8423 -11.1129 -4.1690 28 6 -3.1552 -11.2171 -2.9683 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0016 31 1 2.6852 -3.7142 0.8911 32 1 2.6839 -3.7149 -0.8888 33 1 0.4366 -4.7621 -0.8875 34 1 0.4373 -4.7618 0.8925 35 1 2.4553 -6.2020 0.8929 36 1 2.4552 -6.2030 -0.8871 37 1 2.1341 -8.6276 0.8945 38 1 2.1351 -8.6285 -0.8855 39 1 -0.2423 -9.4405 0.8461 40 1 0.8974 -10.5830 0.0950 41 1 -0.0998 -8.8694 -1.9163 42 1 -0.9702 -8.6813 -3.5200 43 1 -4.3193 -9.6585 -7.1043 44 1 -5.9572 -11.6187 -6.6126 45 1 -3.4244 -11.9660 -2.2382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283473094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:33 Heat of formation + Delta-G solvation = -2.876115 kcal Electronic energy + Delta-G solvation = -26271.846701 eV Core-core repulsion = 22290.298390 eV Total energy + Delta-G solvation = -3981.548311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.16862 -40.08568 -38.29759 -37.81041 -35.48207 -34.76284 -33.30568 -32.34873 -30.84368 -30.56411 -29.74103 -28.66702 -25.12648 -24.49112 -23.96693 -22.58551 -22.49313 -21.31644 -20.95838 -20.81622 -18.95861 -17.72662 -17.13487 -16.98820 -16.81362 -16.68647 -16.10770 -15.62268 -15.43129 -15.07793 -14.77639 -14.54769 -14.19699 -14.07913 -13.69633 -13.58032 -13.32638 -13.30880 -13.05010 -13.02167 -12.83602 -12.71758 -12.19009 -11.68615 -11.30728 -10.89892 -10.76307 -10.74389 -10.68551 -10.61767 -10.51190 -10.03985 -9.69341 -9.68056 -9.60980 -9.38337 -8.91087 -8.85511 -8.57550 -6.90606 -5.74026 -3.03312 0.18589 0.89395 2.01426 2.40676 2.73431 2.91150 3.45660 3.48817 3.52061 3.54133 3.62627 3.82885 4.21949 4.41147 4.49773 4.55828 4.60637 4.67253 4.75928 4.87719 4.90613 5.12887 5.19259 5.27250 5.29088 5.39664 5.49365 5.57883 5.59153 5.60517 5.66248 5.90155 5.97114 5.97605 6.09070 6.12402 6.27932 6.37968 6.42033 6.83472 6.84613 6.87922 7.16189 7.19805 7.62898 7.71566 7.90766 8.44729 9.55605 10.13645 10.48297 11.48891 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.001832 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.947212 B =15279.041488 C =17141.248285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.387 6.387 14 C 0.047 3.953 15 C 0.124 3.876 16 N -0.716 5.716 17 C 0.569 3.431 18 O -0.543 6.543 19 C -0.180 4.180 20 C 0.136 3.864 21 N -0.452 5.452 22 C 0.115 3.885 23 C -0.198 4.198 24 C 0.081 3.919 25 N -0.581 5.581 26 H 0.422 0.578 27 C 0.023 3.977 28 C -0.011 4.011 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.406 0.594 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.182 0.818 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -30.494 -9.765 32.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.306 6.306 14 C -0.030 4.030 15 C 0.000 4.000 16 N -0.368 5.368 17 C 0.356 3.644 18 O -0.421 6.421 19 C -0.186 4.186 20 C -0.035 4.035 21 N -0.159 5.159 22 C -0.015 4.015 23 C -0.223 4.223 24 C -0.050 4.050 25 N -0.183 5.183 26 H 0.261 0.739 27 C -0.086 4.086 28 C -0.040 4.040 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.242 0.758 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.199 0.801 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.138 -30.415 -9.765 32.732 hybrid contribution 0.095 0.315 0.507 0.605 sum -7.043 -30.100 -9.258 32.269 Atomic orbital electron populations 1.69670 1.05127 1.25682 1.57654 1.24770 0.95561 0.97766 1.03005 0.86161 0.78603 0.83741 0.77518 1.21687 1.21751 1.20762 1.19235 0.91047 0.84135 1.42808 0.91135 1.42339 1.05971 0.99905 1.89522 1.20512 0.93304 0.85481 0.97828 1.21674 0.99429 0.91796 1.03391 1.22515 0.91801 0.86432 1.00116 1.87933 1.33927 1.13285 1.95471 1.22727 0.94944 0.83837 1.01512 1.21442 0.93747 0.97823 0.86959 1.45806 1.34043 1.35950 1.21038 1.17853 0.79722 0.80977 0.85848 1.90779 1.67819 1.37177 1.46354 1.20548 1.00130 1.00788 0.97161 1.22798 0.97517 0.95286 0.87914 1.67211 1.05603 1.23263 1.19835 1.19229 0.94867 0.92646 0.94797 1.20640 0.98635 1.02761 1.00305 1.22103 1.00454 0.95624 0.86846 1.41759 1.28871 1.31258 1.16457 0.73929 1.19003 0.94209 0.98316 0.97103 1.20512 0.92231 0.97672 0.93581 0.93475 0.78167 0.96346 0.96321 0.91109 0.91173 0.93220 0.93210 0.91453 0.92543 0.90186 0.89808 0.75786 0.82109 0.82646 0.80061 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.15 5.60 -59.91 -0.34 -19.49 16 10 C 0.16 3.17 6.26 -4.04 -0.03 3.15 16 11 C -0.12 -2.07 5.70 -26.73 -0.15 -2.23 16 12 C 0.07 0.87 5.94 37.16 0.22 1.09 16 13 O -0.39 -4.74 10.29 -35.23 -0.36 -5.10 16 14 C 0.05 0.40 6.07 37.16 0.23 0.63 16 15 C 0.12 1.11 6.06 -4.03 -0.02 1.08 16 16 N -0.72 -6.80 5.46 -61.33 -0.33 -7.13 16 17 C 0.57 6.47 7.77 -12.45 -0.10 6.37 16 18 O -0.54 -7.71 16.40 5.29 0.09 -7.62 16 19 C -0.18 -1.87 5.89 -104.79 -0.62 -2.49 16 20 C 0.14 1.40 10.69 -17.14 -0.18 1.21 16 21 N -0.45 -5.40 10.40 -10.71 -0.11 -5.51 16 22 C 0.12 1.23 7.32 -84.80 -0.62 0.61 16 23 C -0.20 -1.53 10.84 -39.54 -0.43 -1.96 16 24 C 0.08 0.37 11.82 -16.79 -0.20 0.18 16 25 N -0.58 -3.09 6.14 -10.66 -0.07 -3.16 16 26 H 0.42 0.90 8.96 -40.82 -0.37 0.53 16 27 C 0.02 0.21 7.27 -83.96 -0.61 -0.40 16 28 C -0.01 -0.11 9.72 -38.79 -0.38 -0.48 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.41 3.26 6.51 -40.82 -0.27 3.00 16 42 H 0.16 1.27 6.38 -52.49 -0.34 0.94 16 43 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.18 0.08 8.06 -52.49 -0.42 -0.34 16 45 H 0.15 1.22 7.72 -52.49 -0.41 0.82 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -37.43 385.97 -9.04 -46.47 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.30 Total: 6.98 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.13 Total: -0.83 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.12 Total: -63.37 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.28 Total: -12.73 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.43 -9.04 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283473094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.595 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds