Wall clock time and date at job start Tue Mar 31 2020 16:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48490 * 109.46937 * 269.99773 * 3 2 1 5 5 H 1.48492 * 109.46933 * 30.00250 * 3 2 1 6 6 H 1.48498 * 109.46810 * 149.99888 * 3 2 1 7 7 C 1.38809 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00236 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99733 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46980 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46852 * 180.02562 * 12 11 10 14 14 C 1.42896 * 113.99747 * 180.02562 * 13 12 11 15 15 C 1.53010 * 109.47136 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46877 * 64.99580 * 15 14 13 17 17 C 1.34772 * 119.99555 * 180.02562 * 16 15 14 18 18 O 1.21589 * 120.00108 * 0.02562 * 17 16 15 19 19 C 1.47585 * 119.99929 * 179.97438 * 17 16 15 20 20 C 1.40084 * 120.35574 * 359.97372 * 19 17 16 21 21 N 1.31167 * 121.11938 * 180.02562 * 20 19 17 22 22 C 1.33367 * 121.67447 * 0.02562 * 21 20 19 23 23 C 1.41845 * 133.16684 * 179.97438 * 22 21 20 24 24 C 1.34452 * 107.96006 * 180.02562 * 23 22 21 25 25 N 1.36545 * 109.71370 * 0.02562 * 24 23 22 26 26 H 0.97003 * 125.59715 * 180.02562 * 25 24 23 27 27 C 1.37852 * 108.80200 * 0.02562 * 25 24 23 28 28 C 1.38731 * 133.56557 * 179.97438 * 27 25 24 29 29 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00285 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47417 * 60.00330 * 10 9 7 32 32 H 1.09000 * 109.47194 * 300.00249 * 10 9 7 33 33 H 1.09000 * 109.46828 * 59.99809 * 11 10 9 34 34 H 1.09000 * 109.47058 * 299.99956 * 11 10 9 35 35 H 1.09000 * 109.47067 * 60.00423 * 12 11 10 36 36 H 1.09000 * 109.47142 * 299.99847 * 12 11 10 37 37 H 1.09003 * 109.47784 * 59.99525 * 14 13 12 38 38 H 1.09000 * 109.46939 * 299.99162 * 14 13 12 39 39 H 1.08992 * 109.46738 * 304.99923 * 15 14 13 40 40 H 1.08995 * 109.47238 * 184.99667 * 15 14 13 41 41 H 0.96999 * 120.00277 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.44152 * 0.05205 * 20 19 17 43 43 H 1.08001 * 126.02266 * 0.04472 * 23 22 21 44 44 H 1.08002 * 125.14431 * 180.26568 * 24 23 22 45 45 H 1.07998 * 120.91264 * 0.04370 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 6 1.8286 -6.1447 0.0029 13 8 0.8999 -7.2309 0.0029 14 6 1.5145 -8.5209 0.0041 15 6 0.4314 -9.6018 0.0046 16 7 -0.3263 -9.5344 -1.2475 17 6 -1.3380 -10.3966 -1.4700 18 8 -1.6221 -11.2300 -0.6315 19 6 -2.1017 -10.3284 -2.7311 20 6 -1.7817 -9.3703 -3.7016 21 7 -2.4508 -9.2960 -4.8273 22 6 -3.4607 -10.1241 -5.0977 23 6 -4.3325 -10.2611 -6.2082 24 6 -5.1782 -11.2737 -5.9488 25 7 -4.8998 -11.8035 -4.7215 26 1 -5.3690 -12.5441 -4.3066 27 6 -3.8423 -11.1129 -4.1690 28 6 -3.1552 -11.2171 -2.9683 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0016 31 1 2.6852 -3.7142 0.8911 32 1 2.6839 -3.7149 -0.8888 33 1 0.4366 -4.7621 -0.8875 34 1 0.4373 -4.7618 0.8925 35 1 2.4553 -6.2020 0.8929 36 1 2.4552 -6.2030 -0.8871 37 1 2.1341 -8.6276 0.8945 38 1 2.1351 -8.6285 -0.8855 39 1 -0.2423 -9.4405 0.8461 40 1 0.8974 -10.5830 0.0950 41 1 -0.0998 -8.8694 -1.9163 42 1 -0.9702 -8.6813 -3.5200 43 1 -4.3193 -9.6585 -7.1043 44 1 -5.9572 -11.6187 -6.6126 45 1 -3.4244 -11.9660 -2.2382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283473094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:32 Heat of formation + Delta-G solvation = -31.640216 kcal Electronic energy + Delta-G solvation = -26273.094006 eV Core-core repulsion = 22290.298390 eV Total energy + Delta-G solvation = -3982.795616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.77728 -40.90149 -39.18294 -38.55971 -37.03542 -35.88477 -34.13581 -33.98231 -31.94433 -31.21726 -31.02098 -29.54831 -26.79720 -25.24222 -24.67655 -24.25007 -23.29477 -22.28967 -21.84722 -21.74240 -19.62784 -19.13800 -18.35926 -17.85680 -17.67852 -17.46680 -16.97830 -16.64108 -16.40855 -16.25476 -15.79831 -15.60206 -15.35037 -15.23579 -15.04329 -14.65347 -14.42551 -14.22696 -13.98031 -13.92483 -13.49858 -13.46828 -13.28429 -13.13394 -12.78544 -12.59300 -12.38776 -12.06453 -12.01084 -11.90787 -11.73776 -11.46652 -11.42896 -10.93780 -10.53366 -10.41685 -10.20204 -9.56629 -9.14711 -9.01875 -7.95556 -5.25679 -0.51424 0.17953 1.44234 1.47896 1.50611 1.59027 1.85032 1.96517 2.23105 2.51859 2.68280 2.87369 3.21018 3.38107 3.62149 3.71024 3.80281 3.85485 3.98541 4.06943 4.11493 4.16633 4.23867 4.39021 4.42895 4.44811 4.55212 4.60816 4.65246 4.76017 4.78864 4.83017 4.85523 4.91933 4.98192 5.30182 5.34515 5.35540 5.37058 5.40311 5.49394 5.79906 6.24945 6.29404 6.41453 6.50054 6.90411 7.08638 7.32138 8.08135 8.30621 9.28351 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.001832 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.947212 B =15279.041488 C =17141.248285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.115 4.115 12 C 0.078 3.922 13 O -0.407 6.407 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.709 5.709 17 C 0.570 3.430 18 O -0.578 6.578 19 C -0.198 4.198 20 C 0.132 3.868 21 N -0.486 5.486 22 C 0.088 3.912 23 C -0.237 4.237 24 C 0.119 3.881 25 N -0.566 5.566 26 H 0.440 0.560 27 C 0.010 3.990 28 C -0.011 4.011 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.026 0.974 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.413 0.587 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.233 0.767 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -31.891 -10.616 34.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.153 4.153 12 C 0.001 3.999 13 O -0.327 6.327 14 C -0.029 4.029 15 C 0.000 4.000 16 N -0.361 5.361 17 C 0.358 3.642 18 O -0.459 6.459 19 C -0.205 4.205 20 C -0.039 4.039 21 N -0.194 5.194 22 C -0.043 4.043 23 C -0.261 4.261 24 C -0.013 4.013 25 N -0.170 5.170 26 H 0.281 0.719 27 C -0.100 4.100 28 C -0.039 4.039 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.250 0.750 42 H 0.193 0.807 43 H 0.180 0.820 44 H 0.250 0.750 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.607 -31.853 -10.613 34.219 hybrid contribution -0.130 0.617 0.702 0.943 sum -6.737 -31.237 -9.911 33.457 Atomic orbital electron populations 1.69839 1.06789 1.26192 1.59430 1.25676 0.96486 1.01463 1.03595 0.85059 0.77678 0.79012 0.77520 1.21233 1.22198 1.19153 1.19695 0.91683 0.85274 1.41376 0.90234 1.42617 1.05724 1.01433 1.89553 1.20684 0.93856 0.84434 0.98225 1.21488 0.98623 0.92978 1.02203 1.22310 0.91166 0.84729 1.01652 1.87889 1.34660 1.14463 1.95735 1.22897 0.94828 0.81710 1.03417 1.21508 0.93587 0.98857 0.86039 1.45816 1.33457 1.35476 1.21344 1.17995 0.79821 0.80661 0.85739 1.90748 1.68981 1.38722 1.47484 1.20504 1.01078 1.01854 0.97048 1.23011 0.97755 0.95455 0.87638 1.67209 1.06908 1.24625 1.20665 1.19810 0.95125 0.93007 0.96325 1.20942 0.99780 1.04975 1.00449 1.22863 0.99277 0.93061 0.86089 1.41871 1.27573 1.31064 1.16496 0.71858 1.18996 0.95418 0.98831 0.96784 1.20658 0.91928 0.97404 0.93955 0.93954 0.79583 0.95601 0.95381 0.92143 0.92587 0.91885 0.91416 0.89608 0.90437 0.91893 0.88339 0.74957 0.80717 0.82037 0.75042 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -39.49 5.60 -343.45 -1.92 -41.41 16 10 C 0.15 6.14 6.26 86.38 0.54 6.68 16 11 C -0.11 -3.76 5.70 30.59 0.17 -3.59 16 12 C 0.08 1.84 5.94 71.98 0.43 2.27 16 13 O -0.41 -9.37 10.29 -148.98 -1.53 -10.90 16 14 C 0.05 0.72 6.07 71.99 0.44 1.15 16 15 C 0.12 2.11 6.06 86.38 0.52 2.63 16 16 N -0.71 -13.34 5.46 -466.21 -2.54 -15.88 16 17 C 0.57 13.29 7.77 86.71 0.67 13.96 16 18 O -0.58 -16.85 16.40 -3.99 -0.07 -16.92 16 19 C -0.20 -4.29 5.89 -19.97 -0.12 -4.41 16 20 C 0.13 2.84 10.69 85.24 0.91 3.75 16 21 N -0.49 -12.12 10.40 -187.79 -1.95 -14.07 16 22 C 0.09 1.90 7.32 40.46 0.30 2.19 16 23 C -0.24 -3.42 10.84 22.30 0.24 -3.18 16 24 C 0.12 0.75 11.82 83.09 0.98 1.73 16 25 N -0.57 -4.76 6.14 -187.65 -1.15 -5.91 16 26 H 0.44 0.64 8.96 -92.71 -0.83 -0.19 16 27 C 0.01 0.17 7.27 38.97 0.28 0.45 16 28 C -0.01 -0.21 9.72 22.78 0.22 0.01 16 29 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.41 6.49 6.51 -92.71 -0.60 5.89 16 42 H 0.18 2.90 6.38 -2.91 -0.02 2.88 16 43 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.23 -1.00 8.06 -2.91 -0.02 -1.02 16 45 H 0.15 2.60 7.72 -2.91 -0.02 2.58 16 Total: -1.00 -82.92 385.97 -1.06 -83.98 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -1.10 Total: 27.13 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.90 Total: 6.05 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -7.29 Total: -138.07 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.60 Total: -27.82 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -82.92 -1.06 -83.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283473094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -82.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds