Wall clock time and date at job start Tue Mar 31 2020 16:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48507 * 109.46998 * 240.00079 * 3 2 1 5 5 H 1.48497 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47200 * 120.00526 * 3 2 1 7 7 C 1.38814 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00189 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47007 * 180.02562 * 10 9 7 12 12 C 1.38229 * 120.40926 * 95.00566 * 11 10 9 13 13 C 1.39379 * 118.35112 * 180.02562 * 12 11 10 14 14 O 1.35522 * 120.51413 * 180.02562 * 13 12 11 15 15 N 1.32828 * 118.97573 * 0.02562 * 13 12 11 16 16 C 1.31764 * 120.71660 * 359.97438 * 15 13 12 17 17 C 1.50696 * 119.08875 * 180.02562 * 16 15 13 18 18 N 1.46506 * 109.47240 * 90.00060 * 17 16 15 19 19 C 1.34781 * 119.99647 * 179.97438 * 18 17 16 20 20 O 1.21275 * 120.00234 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99411 * 179.97438 * 19 18 17 22 22 H 1.09000 * 115.58163 * 325.77399 * 21 19 18 23 23 C 1.53126 * 117.51488 * 111.54177 * 21 19 18 24 24 C 1.52459 * 117.51175 * 180.02562 * 21 19 18 25 25 C 1.53260 * 128.58747 * 134.95397 * 24 21 19 26 26 C 1.53889 * 86.97989 * 194.93106 * 25 24 21 27 27 C 1.53447 * 128.65734 * 10.17735 * 24 21 19 28 28 N 1.31788 * 121.81572 * 0.27917 * 16 15 13 29 29 H 0.96999 * 119.99677 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99504 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46694 * 60.00996 * 10 9 7 32 32 H 1.08999 * 109.47594 * 300.01028 * 10 9 7 33 33 H 1.08004 * 120.82585 * 0.04616 * 12 11 10 34 34 H 0.96698 * 113.99700 * 269.98071 * 14 13 12 35 35 H 1.09000 * 109.47469 * 330.00086 * 17 16 15 36 36 H 1.09002 * 109.46938 * 209.99583 * 17 16 15 37 37 H 0.96993 * 119.99657 * 0.02562 * 18 17 16 38 38 H 1.09004 * 117.50883 * 359.97438 * 23 21 19 39 39 H 1.08991 * 117.55075 * 214.88282 * 23 21 19 40 40 H 1.09002 * 113.64852 * 80.38772 * 25 24 21 41 41 H 1.08999 * 113.64512 * 309.47402 * 25 24 21 42 42 H 1.09005 * 113.58717 * 139.53029 * 26 25 24 43 43 H 1.08999 * 113.59117 * 270.34026 * 26 25 24 44 44 H 1.08995 * 113.56108 * 50.51775 * 27 24 21 45 45 H 1.09000 * 113.78120 * 279.55299 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0784 -4.8022 -0.0021 12 6 0.7023 -5.4008 -1.1899 13 6 -0.2066 -6.4562 -1.1404 14 8 -0.6051 -7.0751 -2.2784 15 7 -0.6763 -6.8462 0.0392 16 6 -0.2912 -6.2478 1.1482 17 6 -0.8470 -6.7205 2.4668 18 7 0.0184 -7.7685 3.0139 19 6 -0.2836 -8.3433 4.1950 20 8 -1.2720 -7.9934 4.8046 21 6 0.6062 -9.4216 4.7575 22 1 1.0728 -10.0776 4.0227 23 6 1.4073 -9.0906 6.0198 24 6 0.2110 -10.0333 6.0969 25 6 0.1832 -11.5111 6.5019 26 6 -0.6618 -11.0793 7.7133 27 6 -1.0963 -9.8597 6.8815 28 7 0.5627 -5.2441 1.1355 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6850 -3.7150 0.8879 32 1 2.6840 -3.7142 -0.8920 33 1 1.1031 -5.0593 -2.1329 34 1 -1.3895 -6.6826 -2.6854 35 1 -1.8501 -7.1196 2.3163 36 1 -0.8896 -5.8838 3.1640 37 1 0.8090 -8.0480 2.5266 38 1 1.2908 -8.0928 6.4429 39 1 2.4006 -9.5288 6.1159 40 1 1.1617 -11.9092 6.7708 41 1 -0.3541 -12.1471 5.7984 42 1 -1.4781 -11.7644 7.9422 43 1 -0.0675 -10.8203 8.5896 44 1 -1.9902 -10.0348 6.2829 45 1 -1.1451 -8.9342 7.4551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316715034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:54 Heat of formation + Delta-G solvation = 38.704434 kcal Electronic energy + Delta-G solvation = -27073.004180 eV Core-core repulsion = 23093.258937 eV Total energy + Delta-G solvation = -3979.745243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28033 -40.49215 -38.63304 -37.77472 -35.67859 -34.61910 -33.92719 -33.13596 -31.81066 -30.65608 -27.93283 -26.58951 -25.91370 -24.27270 -23.50288 -23.32254 -22.65359 -21.50695 -20.46397 -18.92205 -18.62218 -17.84005 -17.36154 -17.28292 -16.53453 -15.75719 -15.50122 -15.44945 -15.33407 -14.99389 -14.84942 -14.56857 -14.16079 -13.80504 -13.37034 -13.10454 -13.03529 -12.84529 -12.67809 -12.54851 -12.26775 -12.12666 -11.91644 -11.80983 -11.70353 -11.08114 -10.86300 -10.67436 -10.60895 -10.42247 -10.35701 -10.19986 -10.08000 -9.93960 -9.81330 -9.41542 -9.23056 -9.22013 -9.00369 -7.08636 -5.85931 -3.17670 0.73856 0.97776 2.36756 2.87781 3.16715 3.39609 3.43971 3.45218 3.49106 3.75100 3.84992 4.12334 4.31651 4.33674 4.47663 4.51590 4.54679 4.62898 4.80696 4.89781 5.09244 5.10348 5.26337 5.28431 5.35228 5.39919 5.44282 5.46488 5.55327 5.58443 5.62318 5.68333 5.73541 5.91447 5.93582 6.04847 6.15501 6.17294 6.18711 6.32800 6.43167 6.99425 7.26048 7.32020 7.59394 8.07860 8.08531 8.29700 9.41877 9.92396 10.27909 11.36311 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002303 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.873656 B =12156.579655 C =13611.756310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.196 3.804 11 C 0.200 3.800 12 C -0.217 4.217 13 C 0.353 3.647 14 O -0.478 6.478 15 N -0.533 5.533 16 C 0.316 3.684 17 C 0.196 3.804 18 N -0.717 5.717 19 C 0.548 3.452 20 O -0.532 6.532 21 C -0.179 4.179 22 H 0.123 0.877 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.099 4.099 26 C -0.143 4.143 27 C -0.083 4.083 28 N -0.491 5.491 29 H 0.258 0.742 30 H 0.385 0.615 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.156 0.844 34 H 0.408 0.592 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.402 0.598 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -23.251 6.668 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.367 5.367 10 C 0.069 3.931 11 C 0.055 3.945 12 C -0.241 4.241 13 C 0.166 3.834 14 O -0.285 6.285 15 N -0.259 5.259 16 C 0.047 3.953 17 C 0.071 3.929 18 N -0.370 5.370 19 C 0.334 3.666 20 O -0.409 6.409 21 C -0.200 4.200 22 H 0.140 0.860 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.180 4.180 27 C -0.120 4.120 28 N -0.207 5.207 29 H 0.067 0.933 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.174 0.826 34 H 0.267 0.733 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.050 -23.509 7.970 24.824 hybrid contribution 0.457 1.376 -1.634 2.185 sum 0.506 -22.133 6.336 23.028 Atomic orbital electron populations 1.69661 1.05224 1.26075 1.56846 1.24788 0.95574 0.97862 1.02376 0.86193 0.78487 0.83072 0.77946 1.21109 1.21617 1.21055 1.19153 0.91101 0.83491 1.43934 0.90783 1.42161 1.05835 0.98872 1.89851 1.19717 0.90800 0.82382 1.00234 1.22207 0.92153 0.93519 0.86614 1.22976 1.02200 0.96875 1.02089 1.19370 0.91094 0.87373 0.85545 1.84692 1.50623 1.58527 1.34661 1.67680 1.28019 1.31334 0.98849 1.22715 0.90874 0.88819 0.92892 1.19870 0.93616 0.91485 0.87901 1.45759 1.29186 1.39569 1.22446 1.19579 0.85255 0.81686 0.80063 1.90707 1.27600 1.63336 1.59226 1.22118 1.04155 1.01021 0.92744 0.85956 1.22825 0.95296 1.00549 0.97087 1.22352 0.98148 0.96044 0.96139 1.22510 1.00495 0.92999 0.97617 1.22813 0.99815 0.98508 0.96857 1.22365 0.95141 0.98075 0.96412 1.68195 1.09519 1.12102 1.30931 0.93258 0.78091 0.93437 0.93801 0.82591 0.73300 0.88747 0.88215 0.76457 0.87791 0.87549 0.91265 0.89622 0.91250 0.90133 0.89394 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.87 5.59 -61.09 -0.34 -18.22 16 10 C 0.20 3.81 6.61 -5.20 -0.03 3.78 16 11 C 0.20 3.45 6.19 -82.31 -0.51 2.94 16 12 C -0.22 -3.21 9.79 -39.16 -0.38 -3.59 16 13 C 0.35 4.98 7.83 -16.70 -0.13 4.85 16 14 O -0.48 -5.45 13.58 -18.26 -0.25 -5.70 16 15 N -0.53 -7.99 10.36 -10.78 -0.11 -8.10 16 16 C 0.32 4.83 7.01 -157.23 -1.10 3.73 16 17 C 0.20 2.67 6.10 -5.19 -0.03 2.63 16 18 N -0.72 -8.46 5.55 -61.47 -0.34 -8.80 16 19 C 0.55 6.75 7.61 -10.98 -0.08 6.67 16 20 O -0.53 -8.22 15.15 5.56 0.08 -8.13 16 21 C -0.18 -1.67 6.19 -91.98 -0.57 -2.24 16 22 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.12 -1.00 10.24 -26.92 -0.28 -1.28 16 24 C -0.13 -1.13 2.89 -154.67 -0.45 -1.57 16 25 C -0.10 -0.70 8.09 -26.13 -0.21 -0.91 16 26 C -0.14 -1.02 8.08 -25.81 -0.21 -1.23 16 27 C -0.08 -0.80 6.49 -26.04 -0.17 -0.97 16 28 N -0.49 -8.50 10.27 -7.05 -0.07 -8.57 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 10.29 7.66 -40.82 -0.31 9.98 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.41 2.69 9.06 45.56 0.41 3.10 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.40 4.13 8.46 -40.82 -0.35 3.79 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -33.68 388.09 -9.58 -43.26 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -5.70 Total: 12.95 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -4.40 Total: 5.62 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -0.14 Total: -70.75 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.16 Total: -13.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.68 -9.58 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316715034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.968 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds