Wall clock time and date at job start Tue Mar 31 2020 16:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48507 * 109.46998 * 240.00079 * 3 2 1 5 5 H 1.48497 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47200 * 120.00526 * 3 2 1 7 7 C 1.38814 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00189 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47007 * 180.02562 * 10 9 7 12 12 C 1.38229 * 120.40926 * 95.00566 * 11 10 9 13 13 C 1.39379 * 118.35112 * 180.02562 * 12 11 10 14 14 O 1.35522 * 120.51413 * 180.02562 * 13 12 11 15 15 N 1.32828 * 118.97573 * 0.02562 * 13 12 11 16 16 C 1.31764 * 120.71660 * 359.97438 * 15 13 12 17 17 C 1.50696 * 119.08875 * 180.02562 * 16 15 13 18 18 N 1.46506 * 109.47240 * 90.00060 * 17 16 15 19 19 C 1.34781 * 119.99647 * 179.97438 * 18 17 16 20 20 O 1.21275 * 120.00234 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99411 * 179.97438 * 19 18 17 22 22 H 1.09000 * 115.58163 * 325.77399 * 21 19 18 23 23 C 1.53126 * 117.51488 * 111.54177 * 21 19 18 24 24 C 1.52459 * 117.51175 * 180.02562 * 21 19 18 25 25 C 1.53260 * 128.58747 * 134.95397 * 24 21 19 26 26 C 1.53889 * 86.97989 * 194.93106 * 25 24 21 27 27 C 1.53447 * 128.65734 * 10.17735 * 24 21 19 28 28 N 1.31788 * 121.81572 * 0.27917 * 16 15 13 29 29 H 0.96999 * 119.99677 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99504 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46694 * 60.00996 * 10 9 7 32 32 H 1.08999 * 109.47594 * 300.01028 * 10 9 7 33 33 H 1.08004 * 120.82585 * 0.04616 * 12 11 10 34 34 H 0.96698 * 113.99700 * 269.98071 * 14 13 12 35 35 H 1.09000 * 109.47469 * 330.00086 * 17 16 15 36 36 H 1.09002 * 109.46938 * 209.99583 * 17 16 15 37 37 H 0.96993 * 119.99657 * 0.02562 * 18 17 16 38 38 H 1.09004 * 117.50883 * 359.97438 * 23 21 19 39 39 H 1.08991 * 117.55075 * 214.88282 * 23 21 19 40 40 H 1.09002 * 113.64852 * 80.38772 * 25 24 21 41 41 H 1.08999 * 113.64512 * 309.47402 * 25 24 21 42 42 H 1.09005 * 113.58717 * 139.53029 * 26 25 24 43 43 H 1.08999 * 113.59117 * 270.34026 * 26 25 24 44 44 H 1.08995 * 113.56108 * 50.51775 * 27 24 21 45 45 H 1.09000 * 113.78120 * 279.55299 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0784 -4.8022 -0.0021 12 6 0.7023 -5.4008 -1.1899 13 6 -0.2066 -6.4562 -1.1404 14 8 -0.6051 -7.0751 -2.2784 15 7 -0.6763 -6.8462 0.0392 16 6 -0.2912 -6.2478 1.1482 17 6 -0.8470 -6.7205 2.4668 18 7 0.0184 -7.7685 3.0139 19 6 -0.2836 -8.3433 4.1950 20 8 -1.2720 -7.9934 4.8046 21 6 0.6062 -9.4216 4.7575 22 1 1.0728 -10.0776 4.0227 23 6 1.4073 -9.0906 6.0198 24 6 0.2110 -10.0333 6.0969 25 6 0.1832 -11.5111 6.5019 26 6 -0.6618 -11.0793 7.7133 27 6 -1.0963 -9.8597 6.8815 28 7 0.5627 -5.2441 1.1355 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6850 -3.7150 0.8879 32 1 2.6840 -3.7142 -0.8920 33 1 1.1031 -5.0593 -2.1329 34 1 -1.3895 -6.6826 -2.6854 35 1 -1.8501 -7.1196 2.3163 36 1 -0.8896 -5.8838 3.1640 37 1 0.8090 -8.0480 2.5266 38 1 1.2908 -8.0928 6.4429 39 1 2.4006 -9.5288 6.1159 40 1 1.1617 -11.9092 6.7708 41 1 -0.3541 -12.1471 5.7984 42 1 -1.4781 -11.7644 7.9422 43 1 -0.0675 -10.8203 8.5896 44 1 -1.9902 -10.0348 6.2829 45 1 -1.1451 -8.9342 7.4551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316715034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:53 Heat of formation + Delta-G solvation = 11.980501 kcal Electronic energy + Delta-G solvation = -27074.163017 eV Core-core repulsion = 23093.258937 eV Total energy + Delta-G solvation = -3980.904080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47362 -41.34100 -39.47841 -38.80215 -37.17058 -35.92824 -34.71853 -34.55970 -33.15309 -32.34647 -29.06778 -28.23468 -26.55896 -25.26109 -25.19606 -23.96867 -23.83448 -22.87130 -21.39722 -19.98368 -19.47385 -19.33045 -18.81073 -18.26701 -17.58118 -16.88589 -16.73304 -16.43618 -16.37103 -16.07144 -15.91554 -15.66113 -15.45785 -15.43381 -14.91374 -14.40740 -14.15499 -14.12425 -13.70330 -13.56162 -13.22985 -13.17876 -12.98194 -12.97178 -12.72630 -12.43389 -12.31522 -12.18735 -11.99085 -11.82457 -11.54350 -11.32972 -11.04017 -11.01038 -10.93449 -10.73903 -10.53720 -10.44366 -10.27264 -9.09837 -7.97918 -5.29517 -0.43544 -0.24062 1.43305 1.49039 1.52378 1.58225 1.87870 2.07556 2.50564 2.61985 2.69316 2.78641 3.10110 3.37030 3.39528 3.67180 3.73222 3.78952 3.86741 3.89016 3.97528 4.03890 4.08606 4.12894 4.21027 4.43317 4.51657 4.53774 4.64357 4.78086 4.80078 4.87211 4.87482 4.91153 5.02049 5.08471 5.10982 5.16097 5.18766 5.40494 5.47713 5.52965 5.79176 6.20681 6.38033 6.43785 6.86313 7.12052 7.28264 7.95206 8.20371 9.25242 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002303 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.873656 B =12156.579655 C =13611.756310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.979 3.021 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.086 0.914 9 N -0.735 5.735 10 C 0.198 3.802 11 C 0.184 3.816 12 C -0.211 4.211 13 C 0.364 3.636 14 O -0.473 6.473 15 N -0.537 5.537 16 C 0.318 3.682 17 C 0.202 3.798 18 N -0.709 5.709 19 C 0.543 3.457 20 O -0.570 6.570 21 C -0.184 4.184 22 H 0.148 0.852 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.088 4.088 26 C -0.134 4.134 27 C -0.096 4.096 28 N -0.516 5.516 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.176 0.824 34 H 0.430 0.570 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.411 0.589 38 H 0.088 0.912 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -25.090 6.011 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.379 5.379 10 C 0.072 3.928 11 C 0.039 3.961 12 C -0.235 4.235 13 C 0.176 3.824 14 O -0.284 6.284 15 N -0.263 5.263 16 C 0.049 3.951 17 C 0.076 3.924 18 N -0.362 5.362 19 C 0.332 3.668 20 O -0.449 6.449 21 C -0.205 4.205 22 H 0.166 0.834 23 C -0.149 4.149 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.133 4.133 28 N -0.233 5.233 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.294 0.706 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.107 0.893 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.819 -25.386 7.282 26.472 hybrid contribution -0.120 1.853 -1.473 2.370 sum 1.699 -23.533 5.809 24.299 Atomic orbital electron populations 1.69828 1.06836 1.26316 1.59081 1.25642 0.96391 1.01361 1.03261 0.85137 0.77108 0.78643 0.78394 1.19777 1.22473 1.20398 1.19618 0.91818 0.84496 1.41819 0.89618 1.42322 1.05400 1.00312 1.89836 1.19773 0.91134 0.81158 1.00763 1.21918 0.92790 0.93712 0.87652 1.23083 1.01843 0.96665 1.01863 1.19433 0.90328 0.86646 0.85991 1.84659 1.51992 1.58311 1.33479 1.67762 1.27993 1.31416 0.99122 1.22810 0.90420 0.88358 0.93487 1.19718 0.94015 0.91526 0.87098 1.45701 1.29150 1.38881 1.22442 1.20196 0.85125 0.81890 0.79638 1.90692 1.29401 1.64672 1.60166 1.22182 1.04214 1.00509 0.93548 0.83433 1.22909 0.96373 0.99895 0.95709 1.22551 0.97855 0.97615 0.95617 1.22496 1.01402 0.91512 0.97107 1.22799 1.00171 0.97093 0.97056 1.22371 0.95295 0.98537 0.97116 1.68118 1.10565 1.13076 1.31548 0.93964 0.79694 0.93870 0.91541 0.80673 0.70607 0.88606 0.89724 0.75385 0.89322 0.84747 0.89397 0.89159 0.90362 0.89324 0.91133 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.98 45.15 29.55 68.60 2.03 47.17 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.25 -13.30 9.99 84.03 0.84 -12.47 16 8 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -36.51 5.59 -347.18 -1.94 -38.45 16 10 C 0.20 7.57 6.61 85.63 0.57 8.13 16 11 C 0.18 6.21 6.19 42.46 0.26 6.47 16 12 C -0.21 -5.85 9.79 22.54 0.22 -5.63 16 13 C 0.36 9.53 7.83 84.82 0.66 10.20 16 14 O -0.47 -9.46 13.58 -88.25 -1.20 -10.66 16 15 N -0.54 -15.44 10.36 -300.68 -3.12 -18.56 16 16 C 0.32 9.66 7.01 138.76 0.97 10.63 16 17 C 0.20 5.60 6.10 85.63 0.52 6.12 16 18 N -0.71 -16.66 5.55 -466.78 -2.59 -19.25 16 19 C 0.54 13.49 7.61 87.66 0.67 14.16 16 20 O -0.57 -18.38 15.15 -3.01 -0.05 -18.43 16 21 C -0.18 -3.19 6.19 -11.68 -0.07 -3.27 16 22 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.11 -1.70 10.24 30.47 0.31 -1.39 16 24 C -0.14 -2.28 2.89 -52.29 -0.15 -2.43 16 25 C -0.09 -1.03 8.09 30.98 0.25 -0.78 16 26 C -0.13 -1.75 8.08 31.19 0.25 -1.50 16 27 C -0.10 -1.89 6.49 31.04 0.20 -1.69 16 28 N -0.52 -17.89 10.27 -176.23 -1.81 -19.70 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.37 20.22 7.66 -92.71 -0.71 19.51 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.26 8.06 -2.39 -0.02 2.24 16 33 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 34 H 0.43 4.38 9.06 -74.06 -0.67 3.71 16 35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.41 8.11 8.46 -92.71 -0.78 7.33 16 38 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.32 388.09 -3.53 -76.85 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -1.11 Total: 36.91 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 5.98 Total: 22.85 kcal Atomic # 7 Polarization: -145.53 SS G_CDS: -9.17 Total: -154.70 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.24 Total: -29.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.32 -3.53 -76.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316715034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.833 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds