Wall clock time and date at job start Tue Mar 31 2020 16:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.46820 * 239.99707 * 3 2 1 5 5 H 1.48497 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46723 * 119.99650 * 3 2 1 7 7 C 1.38949 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99517 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00500 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99490 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46602 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99691 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84549 * 336.20061 * 14 13 12 16 16 C 1.53959 * 113.74166 * 107.40070 * 14 13 12 17 17 C 1.53785 * 87.01450 * 139.94521 * 16 14 13 18 18 H 1.08995 * 113.61115 * 89.23281 * 17 16 14 19 19 N 1.46504 * 113.61031 * 220.04605 * 17 16 14 20 20 C 1.34768 * 120.00039 * 254.13827 * 19 17 16 21 21 O 1.21778 * 120.00345 * 0.02562 * 20 19 17 22 22 C 1.41514 * 119.99830 * 180.02562 * 20 19 17 23 23 C 1.35624 * 120.00038 * 179.97438 * 22 20 19 24 24 C 1.41672 * 119.99777 * 179.97438 * 23 22 20 25 25 C 1.38285 * 126.25382 * 180.02562 * 24 23 22 26 26 C 1.39790 * 107.07726 * 179.97438 * 25 24 23 27 27 C 1.35498 * 107.90885 * 359.97438 * 26 25 24 28 28 N 1.35760 * 108.91226 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.68941 * 180.02562 * 28 27 26 30 30 C 1.53779 * 113.61387 * 205.00118 * 14 13 12 31 31 H 0.96995 * 120.00386 * 359.97438 * 1 2 3 32 32 H 0.96993 * 119.99808 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46645 * 60.00572 * 12 10 9 34 34 H 1.08995 * 109.47026 * 300.00355 * 12 10 9 35 35 H 1.00904 * 111.00074 * 56.05138 * 13 12 10 36 36 H 1.09003 * 113.61310 * 25.42616 * 16 14 13 37 37 H 1.08999 * 113.66710 * 254.47480 * 16 14 13 38 38 H 0.97002 * 119.99857 * 74.14261 * 19 17 16 39 39 H 1.08003 * 120.00165 * 0.02562 * 22 20 19 40 40 H 1.07994 * 120.00004 * 0.02562 * 23 22 20 41 41 H 1.07996 * 126.46144 * 359.71992 * 25 24 23 42 42 H 1.07996 * 126.04557 * 179.97438 * 26 25 24 43 43 H 1.08006 * 125.54535 * 179.97438 * 27 26 25 44 44 H 1.08996 * 113.61311 * 105.38789 * 30 14 13 45 45 H 1.09000 * 113.69033 * 334.49630 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1986 -5.9794 0.0016 14 6 1.4984 -7.2708 0.0016 15 1 0.4886 -7.2047 0.4066 16 6 1.5739 -8.0169 -1.3431 17 6 1.7614 -9.3059 -0.5257 18 1 0.8242 -9.7973 -0.2643 19 7 2.7458 -10.2267 -1.0996 20 6 2.3357 -11.3505 -1.7202 21 8 1.1468 -11.6005 -1.8043 22 6 3.2867 -12.2401 -2.2741 23 6 2.8741 -13.3714 -2.8981 24 6 3.8261 -14.2617 -3.4531 25 6 3.5513 -15.4448 -4.1142 26 6 4.7780 -15.9987 -4.4916 27 6 5.7593 -15.1665 -4.0668 28 7 5.1941 -14.1068 -3.4337 29 1 5.6740 -13.3641 -3.0349 30 6 2.3271 -8.4210 0.5976 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3906 0.0005 33 1 0.6170 -4.9209 -0.8886 34 1 0.6176 -4.9205 0.8913 35 1 2.8335 -5.9120 0.7830 36 1 2.4441 -7.7494 -1.9425 37 1 0.6436 -7.9911 -1.9106 38 1 3.6928 -10.0274 -1.0329 39 1 4.3411 -12.0187 -2.1991 40 1 1.8197 -13.5930 -2.9727 41 1 2.5735 -15.8640 -4.2999 42 1 4.9187 -16.9259 -5.0271 43 1 6.8188 -15.3214 -4.2080 44 1 2.0041 -8.7210 1.5944 45 1 3.4039 -8.2654 0.5305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317109439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:39 Heat of formation + Delta-G solvation = 13.450138 kcal Electronic energy + Delta-G solvation = -25928.623516 eV Core-core repulsion = 21947.783164 eV Total energy + Delta-G solvation = -3980.840352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58582 -40.32201 -38.81937 -37.96120 -34.63844 -34.16696 -33.83952 -32.49692 -31.56098 -31.18951 -28.97699 -26.88711 -25.79011 -24.94104 -23.96292 -22.33853 -21.25737 -20.75242 -20.32494 -19.61609 -19.10315 -18.17947 -17.87549 -17.10728 -16.67751 -15.88355 -15.37404 -15.29537 -15.01055 -14.69185 -14.66609 -14.43133 -14.35689 -14.10252 -14.01468 -13.42821 -13.31079 -12.85955 -12.70358 -12.55895 -12.48576 -12.42635 -12.05646 -11.73598 -11.55346 -11.23250 -11.00314 -10.97576 -10.71059 -10.59857 -10.44280 -10.21212 -10.10050 -9.49982 -9.46307 -9.15739 -8.44514 -8.12480 -8.06867 -7.95705 -6.41347 -3.82383 0.26758 2.06369 2.56735 2.71862 3.10839 3.20074 3.25650 3.25797 3.30139 3.91379 4.12657 4.38587 4.39884 4.49420 4.50802 4.56057 4.67270 4.86034 4.86325 4.88023 4.95735 5.09845 5.21162 5.26843 5.44471 5.45601 5.57971 5.62250 5.69570 5.79803 5.84619 5.87064 5.90007 5.99154 6.06170 6.11540 6.28997 6.40870 6.47705 6.52221 6.96221 7.26069 7.36685 7.55045 7.65908 8.06320 8.07311 8.61538 9.17875 9.54651 10.06071 10.76290 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.001433 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.659056 B =19529.623467 C =20006.971779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.049 3.951 13 N -0.654 5.654 14 C 0.062 3.938 15 H 0.075 0.925 16 C -0.137 4.137 17 C 0.122 3.878 18 H 0.114 0.886 19 N -0.715 5.715 20 C 0.553 3.447 21 O -0.553 6.553 22 C -0.250 4.250 23 C 0.031 3.969 24 C 0.001 3.999 25 C -0.140 4.140 26 C -0.208 4.208 27 C 0.016 3.984 28 N -0.544 5.544 29 H 0.417 0.583 30 C -0.148 4.148 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.350 0.650 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.169 0.831 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -30.067 -4.365 31.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.083 4.083 13 N -0.287 5.287 14 C -0.049 4.049 15 H 0.093 0.907 16 C -0.176 4.176 17 C 0.017 3.983 18 H 0.131 0.869 19 N -0.364 5.364 20 C 0.344 3.656 21 O -0.434 6.434 22 C -0.272 4.272 23 C 0.011 3.989 24 C -0.109 4.109 25 C -0.165 4.165 26 C -0.232 4.232 27 C -0.119 4.119 28 N -0.138 5.138 29 H 0.255 0.745 30 C -0.187 4.187 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.170 0.830 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.132 0.868 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.186 0.814 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.827 -29.898 -5.009 31.074 hybrid contribution 0.268 1.370 1.072 1.760 sum 7.095 -28.529 -3.937 29.660 Atomic orbital electron populations 1.69602 1.05936 1.28274 1.50470 1.25259 0.95624 0.99705 0.97280 0.85918 0.78763 0.80475 0.79054 1.19896 1.20962 1.19927 1.19659 0.93344 0.82279 1.47781 0.87991 1.41861 1.09211 1.04604 1.64298 1.19828 0.88379 0.84750 0.84453 1.90513 1.13785 1.87102 1.55543 1.21742 0.94426 0.90958 1.01205 1.60187 1.18377 0.99365 1.50749 1.22833 0.96734 0.88381 0.96943 0.90696 1.23603 1.03085 0.93749 0.97205 1.22361 0.93307 0.88184 0.94458 0.86862 1.45888 1.10136 1.22547 1.57850 1.16940 0.88843 0.81400 0.78390 1.90834 1.17698 1.75534 1.59294 1.21729 0.99396 0.98254 1.07795 1.20865 0.99105 0.90092 0.88865 1.18305 0.82616 0.99832 1.10163 1.21579 0.99021 0.94628 1.01321 1.20922 0.92156 1.02096 1.08072 1.22110 0.99236 0.89463 1.01107 1.42207 1.06375 1.20434 1.44823 0.74501 1.23608 1.01320 0.95595 0.98168 0.91810 0.77438 0.89578 0.93789 0.82952 0.88856 0.91312 0.76510 0.86769 0.83170 0.83691 0.84097 0.81362 0.90831 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.44 7.82 -10.98 -0.09 10.35 16 11 O -0.59 -15.88 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 13 N -0.65 -10.32 6.19 -107.03 -0.66 -10.98 16 14 C 0.06 0.75 4.14 -66.81 -0.28 0.47 16 15 H 0.08 0.86 7.87 -51.93 -0.41 0.46 16 16 C -0.14 -1.62 7.70 -25.82 -0.20 -1.82 16 17 C 0.12 1.27 4.21 -67.11 -0.28 0.98 16 18 H 0.11 1.29 7.50 -51.93 -0.39 0.90 16 19 N -0.71 -6.61 5.35 -55.93 -0.30 -6.91 16 20 C 0.55 6.03 7.56 -15.02 -0.11 5.92 16 21 O -0.55 -8.09 15.73 5.12 0.08 -8.01 16 22 C -0.25 -2.00 9.39 -39.27 -0.37 -2.36 16 23 C 0.03 0.25 9.40 -39.21 -0.37 -0.12 16 24 C 0.00 0.01 6.74 -83.91 -0.57 -0.56 16 25 C -0.14 -0.99 10.86 -38.98 -0.42 -1.41 16 26 C -0.21 -1.26 10.81 -39.98 -0.43 -1.69 16 27 C 0.02 0.08 11.90 -16.79 -0.20 -0.12 16 28 N -0.54 -2.90 5.94 -10.56 -0.06 -2.97 16 29 H 0.42 1.25 7.87 -40.82 -0.32 0.93 16 30 C -0.15 -1.43 7.40 -25.92 -0.19 -1.62 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.35 5.62 8.25 -39.29 -0.32 5.30 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 2.73 8.67 -40.82 -0.35 2.37 16 39 H 0.11 0.59 6.93 -52.48 -0.36 0.22 16 40 H 0.15 1.27 7.46 -52.49 -0.39 0.88 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.17 0.32 8.06 -52.48 -0.42 -0.11 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.88 8.11 -51.93 -0.42 0.45 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -35.06 388.21 -9.33 -44.39 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.19 Total: 15.87 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.78 Total: 0.79 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.36 Total: -59.17 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.06 -9.33 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317109439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.843 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds