Wall clock time and date at job start Tue Mar 31 2020 16:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.46820 * 239.99707 * 3 2 1 5 5 H 1.48497 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46723 * 119.99650 * 3 2 1 7 7 C 1.38949 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99517 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00500 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99490 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46602 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99691 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84549 * 336.20061 * 14 13 12 16 16 C 1.53959 * 113.74166 * 107.40070 * 14 13 12 17 17 C 1.53785 * 87.01450 * 139.94521 * 16 14 13 18 18 H 1.08995 * 113.61115 * 89.23281 * 17 16 14 19 19 N 1.46504 * 113.61031 * 220.04605 * 17 16 14 20 20 C 1.34768 * 120.00039 * 254.13827 * 19 17 16 21 21 O 1.21778 * 120.00345 * 0.02562 * 20 19 17 22 22 C 1.41514 * 119.99830 * 180.02562 * 20 19 17 23 23 C 1.35624 * 120.00038 * 179.97438 * 22 20 19 24 24 C 1.41672 * 119.99777 * 179.97438 * 23 22 20 25 25 C 1.38285 * 126.25382 * 180.02562 * 24 23 22 26 26 C 1.39790 * 107.07726 * 179.97438 * 25 24 23 27 27 C 1.35498 * 107.90885 * 359.97438 * 26 25 24 28 28 N 1.35760 * 108.91226 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.68941 * 180.02562 * 28 27 26 30 30 C 1.53779 * 113.61387 * 205.00118 * 14 13 12 31 31 H 0.96995 * 120.00386 * 359.97438 * 1 2 3 32 32 H 0.96993 * 119.99808 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46645 * 60.00572 * 12 10 9 34 34 H 1.08995 * 109.47026 * 300.00355 * 12 10 9 35 35 H 1.00904 * 111.00074 * 56.05138 * 13 12 10 36 36 H 1.09003 * 113.61310 * 25.42616 * 16 14 13 37 37 H 1.08999 * 113.66710 * 254.47480 * 16 14 13 38 38 H 0.97002 * 119.99857 * 74.14261 * 19 17 16 39 39 H 1.08003 * 120.00165 * 0.02562 * 22 20 19 40 40 H 1.07994 * 120.00004 * 0.02562 * 23 22 20 41 41 H 1.07996 * 126.46144 * 359.71992 * 25 24 23 42 42 H 1.07996 * 126.04557 * 179.97438 * 26 25 24 43 43 H 1.08006 * 125.54535 * 179.97438 * 27 26 25 44 44 H 1.08996 * 113.61311 * 105.38789 * 30 14 13 45 45 H 1.09000 * 113.69033 * 334.49630 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1986 -5.9794 0.0016 14 6 1.4984 -7.2708 0.0016 15 1 0.4886 -7.2047 0.4066 16 6 1.5739 -8.0169 -1.3431 17 6 1.7614 -9.3059 -0.5257 18 1 0.8242 -9.7973 -0.2643 19 7 2.7458 -10.2267 -1.0996 20 6 2.3357 -11.3505 -1.7202 21 8 1.1468 -11.6005 -1.8043 22 6 3.2867 -12.2401 -2.2741 23 6 2.8741 -13.3714 -2.8981 24 6 3.8261 -14.2617 -3.4531 25 6 3.5513 -15.4448 -4.1142 26 6 4.7780 -15.9987 -4.4916 27 6 5.7593 -15.1665 -4.0668 28 7 5.1941 -14.1068 -3.4337 29 1 5.6740 -13.3641 -3.0349 30 6 2.3271 -8.4210 0.5976 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3906 0.0005 33 1 0.6170 -4.9209 -0.8886 34 1 0.6176 -4.9205 0.8913 35 1 2.8335 -5.9120 0.7830 36 1 2.4441 -7.7494 -1.9425 37 1 0.6436 -7.9911 -1.9106 38 1 3.6928 -10.0274 -1.0329 39 1 4.3411 -12.0187 -2.1991 40 1 1.8197 -13.5930 -2.9727 41 1 2.5735 -15.8640 -4.2999 42 1 4.9187 -16.9259 -5.0271 43 1 6.8188 -15.3214 -4.2080 44 1 2.0041 -8.7210 1.5944 45 1 3.4039 -8.2654 0.5305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317109439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:37 Heat of formation + Delta-G solvation = -13.311833 kcal Electronic energy + Delta-G solvation = -25929.784002 eV Core-core repulsion = 21947.783164 eV Total energy + Delta-G solvation = -3982.000838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.03764 -41.18694 -40.20153 -39.39782 -36.14095 -35.44579 -34.82148 -33.62212 -33.19149 -32.00218 -29.56347 -28.41408 -26.69930 -26.25720 -25.18131 -23.19918 -21.85637 -21.29915 -21.21336 -20.96298 -20.26790 -19.87856 -18.75027 -17.89330 -17.78783 -17.20716 -16.85217 -16.44079 -16.21273 -15.94981 -15.72378 -15.52313 -15.18642 -15.09528 -14.82858 -14.62281 -14.41158 -14.21136 -13.50671 -13.38311 -13.31413 -13.25923 -13.22636 -13.10770 -12.93528 -12.86099 -12.43922 -12.22062 -12.14022 -11.94091 -11.54242 -11.49627 -11.30893 -11.00086 -10.33943 -10.02230 -10.00839 -9.90099 -9.32423 -8.61559 -8.46653 -5.95849 -0.33559 1.39876 1.41744 1.52837 1.55953 2.02614 2.04875 2.27558 2.34380 2.35204 2.55373 2.99773 3.20633 3.48927 3.56053 3.68119 3.91621 3.96435 4.00451 4.04761 4.30762 4.37168 4.41962 4.43803 4.47180 4.52817 4.57239 4.61838 4.80649 4.84436 4.95738 5.01586 5.07000 5.13264 5.20056 5.36608 5.37450 5.40386 5.61830 5.92246 5.93582 6.06080 6.14123 6.43309 6.59591 6.62170 6.63844 7.11931 7.29440 7.55779 8.10687 8.70473 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.001433 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.659056 B =19529.623467 C =20006.971779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.666 5.666 14 C 0.059 3.941 15 H 0.086 0.914 16 C -0.138 4.138 17 C 0.128 3.872 18 H 0.104 0.896 19 N -0.705 5.705 20 C 0.549 3.451 21 O -0.600 6.600 22 C -0.261 4.261 23 C 0.039 3.961 24 C -0.024 4.024 25 C -0.152 4.152 26 C -0.230 4.230 27 C 0.030 3.970 28 N -0.538 5.538 29 H 0.428 0.572 30 C -0.131 4.131 31 H 0.278 0.722 32 H 0.396 0.604 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.348 0.652 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.414 0.586 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.203 0.797 44 H 0.090 0.910 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 -30.867 -4.222 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.299 5.299 14 C -0.051 4.051 15 H 0.104 0.896 16 C -0.178 4.178 17 C 0.022 3.978 18 H 0.122 0.878 19 N -0.355 5.355 20 C 0.342 3.658 21 O -0.484 6.484 22 C -0.282 4.282 23 C 0.019 3.981 24 C -0.134 4.134 25 C -0.178 4.178 26 C -0.253 4.253 27 C -0.106 4.106 28 N -0.134 5.134 29 H 0.268 0.732 30 C -0.169 4.169 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.251 0.749 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.173 0.827 43 H 0.220 0.780 44 H 0.108 0.892 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.121 -30.694 -4.851 32.119 hybrid contribution -0.095 1.479 0.953 1.762 sum 8.026 -29.215 -3.898 30.547 Atomic orbital electron populations 1.69666 1.06874 1.29386 1.50192 1.26048 0.96527 1.02436 0.96179 0.84984 0.77759 0.76591 0.78970 1.19770 1.19504 1.19561 1.19657 0.92761 0.84062 1.50146 0.90227 1.41939 1.09330 1.04754 1.64997 1.20879 0.88271 0.86149 0.82197 1.90480 1.15774 1.87972 1.56720 1.21596 0.94171 0.88246 1.02857 1.60164 1.18558 1.00158 1.50973 1.22943 0.97515 0.87142 0.97537 0.89612 1.23582 1.02273 0.94819 0.97155 1.22179 0.93446 0.87752 0.94396 0.87805 1.45788 1.10734 1.21841 1.57100 1.17379 0.88652 0.81829 0.77963 1.90809 1.19670 1.76628 1.61276 1.21720 1.00210 0.97827 1.08463 1.20825 0.98827 0.90216 0.88282 1.18247 0.83495 1.00136 1.11476 1.21886 0.99979 0.94815 1.01130 1.21237 0.92034 1.03161 1.08902 1.22713 1.00628 0.88327 0.98942 1.42257 1.05682 1.20931 1.44503 0.73181 1.23508 1.01327 0.93517 0.98553 0.91288 0.77011 0.88390 0.91365 0.83203 0.89893 0.92067 0.74897 0.83800 0.84526 0.83292 0.82744 0.78019 0.89169 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.61 5.29 -306.97 -1.62 -31.23 16 10 C 0.44 20.86 7.82 87.66 0.69 21.54 16 11 O -0.62 -34.36 15.78 -3.07 -0.05 -34.41 16 12 C 0.06 2.19 6.01 85.56 0.51 2.70 16 13 N -0.67 -20.25 6.19 -492.53 -3.05 -23.30 16 14 C 0.06 1.33 4.14 45.50 0.19 1.52 16 15 H 0.09 1.80 7.87 -2.39 -0.02 1.78 16 16 C -0.14 -3.20 7.70 31.18 0.24 -2.96 16 17 C 0.13 2.53 4.21 45.52 0.19 2.72 16 18 H 0.10 2.32 7.50 -2.39 -0.02 2.30 16 19 N -0.70 -12.33 5.35 -449.07 -2.40 -14.73 16 20 C 0.55 11.87 7.56 85.05 0.64 12.51 16 21 O -0.60 -18.07 15.73 -4.60 -0.07 -18.15 16 22 C -0.26 -3.98 9.39 22.47 0.21 -3.77 16 23 C 0.04 0.63 9.40 22.51 0.21 0.84 16 24 C -0.02 -0.33 6.74 39.08 0.26 -0.07 16 25 C -0.15 -2.07 10.86 22.66 0.25 -1.82 16 26 C -0.23 -2.40 10.81 22.01 0.24 -2.16 16 27 C 0.03 0.22 11.90 83.45 0.99 1.21 16 28 N -0.54 -4.64 5.94 -187.33 -1.11 -5.75 16 29 H 0.43 1.51 7.87 -92.71 -0.73 0.78 16 30 C -0.13 -2.25 7.40 31.12 0.23 -2.02 16 31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 35 H 0.35 10.81 8.25 -89.69 -0.74 10.07 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.41 4.92 8.67 -92.71 -0.80 4.11 16 39 H 0.14 1.20 6.93 -2.91 -0.02 1.18 16 40 H 0.14 2.50 7.46 -2.91 -0.02 2.47 16 41 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.64 8.11 -2.39 -0.02 1.63 16 Total: -1.00 -76.91 388.21 -1.80 -78.72 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.94 Total: 41.86 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.14 Total: 11.66 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -7.90 Total: -124.64 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.12 Total: -52.56 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.91 -1.80 -78.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317109439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.404 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds