Wall clock time and date at job start Tue Mar 31 2020 17:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38634 * 120.47063 * 2 1 4 4 C 1.38585 * 118.48562 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.35315 * 0.02562 * 4 3 2 6 6 N 1.31493 * 120.90210 * 359.73818 * 5 4 3 7 7 C 1.32749 * 121.64360 * 0.52438 * 6 5 4 8 8 C 1.48164 * 119.72417 * 179.75215 * 7 6 5 9 9 O 1.21515 * 119.99694 * 174.87354 * 8 7 6 10 10 N 1.34771 * 120.00124 * 354.87186 * 8 7 6 11 11 C 1.46500 * 120.00224 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.64431 * 323.29685 * 11 10 8 13 13 C 1.54595 * 110.72792 * 86.45341 * 11 10 8 14 14 C 1.53988 * 105.14088 * 140.49478 * 13 11 10 15 15 N 1.47901 * 107.06070 * 1.22522 * 14 13 11 16 16 C 1.46898 * 111.00376 * 214.15615 * 15 14 13 17 17 C 1.50697 * 109.47438 * 176.49603 * 16 15 14 18 18 O 1.21293 * 120.00036 * 7.57399 * 17 16 15 19 19 N 1.34778 * 120.00122 * 187.84347 * 17 16 15 20 20 C 1.37107 * 119.99947 * 179.72901 * 19 17 16 21 21 H 1.08004 * 119.99557 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99598 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00772 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99465 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46779 * 90.00365 * 24 22 20 26 26 H 1.48501 * 109.46705 * 210.00016 * 24 22 20 27 27 H 1.48496 * 109.47527 * 330.00129 * 24 22 20 28 28 C 1.48538 * 105.81846 * 334.67083 * 15 14 13 29 29 H 1.08994 * 109.47094 * 262.88779 * 1 2 3 30 30 H 1.09002 * 109.46537 * 22.89052 * 1 2 3 31 31 H 1.09002 * 109.46803 * 142.88641 * 1 2 3 32 32 H 1.07994 * 120.75519 * 359.95877 * 3 2 1 33 33 H 1.08003 * 120.32195 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.54740 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00548 * 359.97438 * 10 8 7 36 36 H 1.09002 * 110.30724 * 21.57927 * 13 11 10 37 37 H 1.08999 * 110.38976 * 259.45703 * 13 11 10 38 38 H 1.09000 * 109.91878 * 241.87176 * 14 13 11 39 39 H 1.09003 * 110.08253 * 120.67033 * 14 13 11 40 40 H 1.08998 * 109.47164 * 56.49600 * 16 15 14 41 41 H 1.09004 * 109.46901 * 296.49742 * 16 15 14 42 42 H 0.96995 * 120.00033 * 359.72533 * 19 17 16 43 43 H 0.97001 * 120.00715 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.66457 * 157.64025 * 28 15 14 45 45 H 1.08997 * 110.66330 * 280.77090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5951 1.1469 0.0005 5 6 4.2322 -0.0840 0.0005 6 7 3.5407 -1.2024 0.0052 7 6 2.2132 -1.2004 -0.0003 8 6 1.4767 -2.4860 -0.0003 9 8 0.2648 -2.4919 0.0887 10 7 2.1508 -3.6488 -0.0991 11 6 1.4225 -4.9200 -0.0997 12 1 0.5689 -4.8742 0.5767 13 6 0.9677 -5.2894 -1.5303 14 6 1.1792 -6.8108 -1.6393 15 7 1.6940 -7.2721 -0.3318 16 6 2.6403 -8.3829 -0.5007 17 6 3.2075 -8.7682 0.8413 18 8 2.7596 -8.2728 1.8538 19 7 4.2160 -9.6591 0.9160 20 6 4.7357 -10.0054 2.1366 21 1 4.3371 -9.5640 3.0381 22 6 5.7758 -10.9235 2.2135 23 7 6.2611 -11.4602 1.1166 24 14 6.4843 -11.3948 3.8765 25 1 5.7438 -12.5630 4.4168 26 1 7.9187 -11.7465 3.7216 27 1 6.3537 -10.2497 4.8128 28 6 2.3601 -6.0937 0.2797 29 1 -0.3633 -0.1272 1.0197 30 1 -0.3632 0.9468 -0.3998 31 1 -0.3633 -0.8195 -0.6201 32 1 1.6902 2.1415 -0.0007 33 1 4.1723 2.0597 0.0010 34 1 5.3114 -0.1250 0.0014 35 1 3.1182 -3.6442 -0.1706 36 1 1.5786 -4.7687 -2.2677 37 1 -0.0848 -5.0427 -1.6698 38 1 1.9052 -7.0296 -2.4223 39 1 0.2334 -7.3052 -1.8614 40 1 3.4497 -8.0733 -1.1618 41 1 2.1229 -9.2381 -0.9356 42 1 4.5741 -10.0553 0.1063 43 1 6.9869 -12.1014 1.1703 44 1 2.4193 -6.2042 1.3625 45 1 3.3519 -5.9475 -0.1480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318244425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:36 Heat of formation + Delta-G solvation = -21.126495 kcal Electronic energy + Delta-G solvation = -27700.703039 eV Core-core repulsion = 23718.363332 eV Total energy + Delta-G solvation = -3982.339707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04525 -39.63511 -38.66471 -37.41645 -34.78724 -33.92175 -33.55886 -32.45202 -31.31828 -30.77334 -28.56389 -27.59522 -26.51415 -24.88365 -24.11578 -22.62192 -21.45964 -21.22321 -20.25997 -19.18118 -18.29406 -17.85329 -17.11822 -16.34485 -16.16983 -15.77304 -15.53297 -15.31645 -15.11481 -14.56551 -14.35037 -14.17133 -13.90242 -13.78930 -13.53231 -13.44891 -13.18239 -12.97923 -12.74798 -12.60499 -12.33691 -12.25044 -11.88681 -11.68502 -11.50303 -11.29002 -11.17685 -10.86791 -10.61863 -10.39133 -10.28090 -10.21837 -10.17464 -9.65347 -9.48981 -9.39614 -9.02178 -8.42937 -8.04174 -7.93310 -6.41734 -3.82513 0.33642 0.83492 2.55054 2.91917 3.18108 3.26802 3.32602 3.54616 3.85228 3.90019 4.08880 4.29014 4.39070 4.44776 4.55961 4.57451 4.69827 4.82094 5.00411 5.05676 5.16901 5.19886 5.25444 5.34346 5.42021 5.45973 5.52154 5.64319 5.69292 5.80197 5.81540 5.90015 5.91785 5.97104 6.08916 6.12529 6.27071 6.29972 6.44537 6.50464 7.13482 7.19942 7.28510 7.55284 7.55424 8.06125 8.07508 8.61534 9.18070 9.54083 10.05756 10.75991 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002353 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.892959 B =11899.367841 C =13044.734539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.088 4.088 4 C -0.146 4.146 5 C 0.090 3.910 6 N -0.454 5.454 7 C 0.072 3.928 8 C 0.572 3.428 9 O -0.527 6.527 10 N -0.699 5.699 11 C 0.139 3.861 12 H 0.105 0.895 13 C -0.139 4.139 14 C 0.034 3.966 15 N -0.490 5.490 16 C 0.038 3.962 17 C 0.442 3.558 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.037 3.963 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.113 0.887 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 23.319 -8.516 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 C -0.114 4.114 4 C -0.166 4.166 5 C -0.070 4.070 6 N -0.165 5.165 7 C -0.066 4.066 8 C 0.357 3.643 9 O -0.404 6.404 10 N -0.350 5.350 11 C 0.033 3.967 12 H 0.123 0.877 13 C -0.178 4.178 14 C -0.094 4.094 15 N -0.214 5.214 16 C -0.094 4.094 17 C 0.227 3.773 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.091 4.091 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.709 22.430 -7.450 24.569 hybrid contribution 1.634 0.536 -0.376 1.760 sum -5.075 22.966 -7.826 24.788 Atomic orbital electron populations 1.21079 0.88888 1.03325 1.04190 1.20975 0.98509 0.92354 0.95732 1.21571 0.94183 0.98118 0.97547 1.22388 0.95296 0.99895 0.99050 1.22800 1.00575 0.87262 0.96345 1.67550 1.07084 1.32100 1.09726 1.21038 0.89881 0.93664 1.01986 1.17835 0.86621 0.83054 0.76820 1.90735 1.12979 1.86681 1.50008 1.45858 1.11443 1.05047 1.72651 1.22009 0.95906 0.81637 0.97101 0.87737 1.22791 1.02486 0.95552 0.96956 1.22914 1.00773 0.94393 0.91324 1.64496 1.33129 1.05458 1.18318 1.22101 0.94685 0.95437 0.97174 1.19710 0.83436 0.84219 0.89937 1.90498 1.62349 1.56751 1.36579 1.41871 1.30552 1.37955 1.09636 1.19699 1.14472 1.22304 0.86282 0.87893 1.25259 0.97038 0.96726 0.98929 1.69609 1.27318 1.29951 1.27462 0.85862 0.77829 0.79029 0.81602 1.20383 1.20956 1.19415 1.23519 0.94329 0.87732 1.03544 0.90224 0.92237 0.88121 0.84141 0.84203 0.81962 0.75347 0.91347 0.90435 0.93728 0.90078 0.93359 0.88901 0.77489 0.91877 0.86848 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.74 36.01 0.31 -0.77 16 2 C -0.07 -0.72 5.93 -104.09 -0.62 -1.34 16 3 C -0.09 -0.64 9.83 -39.31 -0.39 -1.03 16 4 C -0.15 -0.94 10.11 -39.32 -0.40 -1.34 16 5 C 0.09 0.73 11.18 -17.56 -0.20 0.54 16 6 N -0.45 -5.03 9.55 -9.80 -0.09 -5.13 16 7 C 0.07 0.86 6.75 -83.01 -0.56 0.30 16 8 C 0.57 7.70 7.76 -12.19 -0.09 7.61 16 9 O -0.53 -7.96 13.02 5.35 0.07 -7.89 16 10 N -0.70 -9.08 5.14 -52.85 -0.27 -9.35 16 11 C 0.14 1.95 3.34 -66.07 -0.22 1.73 16 12 H 0.10 1.64 7.69 -51.93 -0.40 1.24 16 13 C -0.14 -1.71 6.67 -25.38 -0.17 -1.88 16 14 C 0.03 0.45 6.70 -2.76 -0.02 0.43 16 15 N -0.49 -8.27 5.10 -231.89 -1.18 -9.46 16 16 C 0.04 0.68 5.31 -4.98 -0.03 0.65 16 17 C 0.44 10.38 7.39 -10.99 -0.08 10.29 16 18 O -0.58 -15.45 13.93 5.55 0.08 -15.37 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.50 13.05 55.49 0.72 -23.78 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.04 0.61 5.20 -1.89 -0.01 0.60 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.10 1.11 5.85 -51.93 -0.30 0.81 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.41 5.00 7.88 -40.82 -0.32 4.68 16 36 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.11 2.25 6.47 -51.93 -0.34 1.92 16 45 H 0.04 0.69 7.89 -51.93 -0.41 0.28 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -32.70 373.68 -9.04 -41.74 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.21 Total: 13.98 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.70 Total: 7.86 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.88 Total: -62.00 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.15 Total: -23.26 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.70 -9.04 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318244425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.614 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds