Wall clock time and date at job start Tue Mar 31 2020 17:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38634 * 120.47063 * 2 1 4 4 C 1.38585 * 118.48562 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.35315 * 0.02562 * 4 3 2 6 6 N 1.31493 * 120.90210 * 359.73818 * 5 4 3 7 7 C 1.32749 * 121.64360 * 0.52438 * 6 5 4 8 8 C 1.48164 * 119.72417 * 179.75215 * 7 6 5 9 9 O 1.21515 * 119.99694 * 174.87354 * 8 7 6 10 10 N 1.34771 * 120.00124 * 354.87186 * 8 7 6 11 11 C 1.46500 * 120.00224 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.64431 * 323.29685 * 11 10 8 13 13 C 1.54595 * 110.72792 * 86.45341 * 11 10 8 14 14 C 1.53988 * 105.14088 * 140.49478 * 13 11 10 15 15 N 1.47901 * 107.06070 * 1.22522 * 14 13 11 16 16 C 1.46898 * 111.00376 * 214.15615 * 15 14 13 17 17 C 1.50697 * 109.47438 * 176.49603 * 16 15 14 18 18 O 1.21293 * 120.00036 * 7.57399 * 17 16 15 19 19 N 1.34778 * 120.00122 * 187.84347 * 17 16 15 20 20 C 1.37107 * 119.99947 * 179.72901 * 19 17 16 21 21 H 1.08004 * 119.99557 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99598 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00772 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99465 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46779 * 90.00365 * 24 22 20 26 26 H 1.48501 * 109.46705 * 210.00016 * 24 22 20 27 27 H 1.48496 * 109.47527 * 330.00129 * 24 22 20 28 28 C 1.48538 * 105.81846 * 334.67083 * 15 14 13 29 29 H 1.08994 * 109.47094 * 262.88779 * 1 2 3 30 30 H 1.09002 * 109.46537 * 22.89052 * 1 2 3 31 31 H 1.09002 * 109.46803 * 142.88641 * 1 2 3 32 32 H 1.07994 * 120.75519 * 359.95877 * 3 2 1 33 33 H 1.08003 * 120.32195 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.54740 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00548 * 359.97438 * 10 8 7 36 36 H 1.09002 * 110.30724 * 21.57927 * 13 11 10 37 37 H 1.08999 * 110.38976 * 259.45703 * 13 11 10 38 38 H 1.09000 * 109.91878 * 241.87176 * 14 13 11 39 39 H 1.09003 * 110.08253 * 120.67033 * 14 13 11 40 40 H 1.08998 * 109.47164 * 56.49600 * 16 15 14 41 41 H 1.09004 * 109.46901 * 296.49742 * 16 15 14 42 42 H 0.96995 * 120.00033 * 359.72533 * 19 17 16 43 43 H 0.97001 * 120.00715 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.66457 * 157.64025 * 28 15 14 45 45 H 1.08997 * 110.66330 * 280.77090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5951 1.1469 0.0005 5 6 4.2322 -0.0840 0.0005 6 7 3.5407 -1.2024 0.0052 7 6 2.2132 -1.2004 -0.0003 8 6 1.4767 -2.4860 -0.0003 9 8 0.2648 -2.4919 0.0887 10 7 2.1508 -3.6488 -0.0991 11 6 1.4225 -4.9200 -0.0997 12 1 0.5689 -4.8742 0.5767 13 6 0.9677 -5.2894 -1.5303 14 6 1.1792 -6.8108 -1.6393 15 7 1.6940 -7.2721 -0.3318 16 6 2.6403 -8.3829 -0.5007 17 6 3.2075 -8.7682 0.8413 18 8 2.7596 -8.2728 1.8538 19 7 4.2160 -9.6591 0.9160 20 6 4.7357 -10.0054 2.1366 21 1 4.3371 -9.5640 3.0381 22 6 5.7758 -10.9235 2.2135 23 7 6.2611 -11.4602 1.1166 24 14 6.4843 -11.3948 3.8765 25 1 5.7438 -12.5630 4.4168 26 1 7.9187 -11.7465 3.7216 27 1 6.3537 -10.2497 4.8128 28 6 2.3601 -6.0937 0.2797 29 1 -0.3633 -0.1272 1.0197 30 1 -0.3632 0.9468 -0.3998 31 1 -0.3633 -0.8195 -0.6201 32 1 1.6902 2.1415 -0.0007 33 1 4.1723 2.0597 0.0010 34 1 5.3114 -0.1250 0.0014 35 1 3.1182 -3.6442 -0.1706 36 1 1.5786 -4.7687 -2.2677 37 1 -0.0848 -5.0427 -1.6698 38 1 1.9052 -7.0296 -2.4223 39 1 0.2334 -7.3052 -1.8614 40 1 3.4497 -8.0733 -1.1618 41 1 2.1229 -9.2381 -0.9356 42 1 4.5741 -10.0553 0.1063 43 1 6.9869 -12.1014 1.1703 44 1 2.4193 -6.2042 1.3625 45 1 3.3519 -5.9475 -0.1480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318244425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:35 Heat of formation + Delta-G solvation = -46.293573 kcal Electronic energy + Delta-G solvation = -27701.794365 eV Core-core repulsion = 23718.363332 eV Total energy + Delta-G solvation = -3983.431033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86026 -40.83692 -39.99699 -38.90713 -36.07429 -35.67639 -34.38896 -33.34337 -33.13120 -32.01809 -29.67901 -28.53854 -27.95800 -26.12045 -25.45095 -23.34088 -22.49725 -22.37413 -21.36801 -20.98293 -19.87748 -19.17626 -17.99669 -17.81106 -17.19272 -16.84369 -16.51712 -16.48570 -16.35597 -16.15529 -15.78927 -15.66345 -15.01279 -14.91507 -14.68674 -14.40933 -14.22067 -14.04609 -13.87889 -13.68585 -13.56817 -13.26969 -13.21050 -12.95523 -12.94148 -12.81287 -12.48374 -12.41889 -12.33827 -12.11768 -11.74053 -11.47618 -11.11728 -10.78969 -10.45106 -10.32564 -10.24912 -10.01065 -9.90752 -9.37952 -8.46896 -5.95340 -0.36955 0.22806 1.37332 1.41222 1.53748 1.66662 1.91876 2.04173 2.28458 2.80953 2.84668 3.11495 3.20040 3.39682 3.47197 3.74888 3.75548 3.84745 3.95620 4.02440 4.04079 4.21593 4.28891 4.33406 4.43114 4.48970 4.55080 4.56009 4.68075 4.77499 4.78294 4.85622 4.91263 5.04910 5.08631 5.12479 5.16446 5.29320 5.40852 5.43509 5.67852 5.79352 5.90765 6.07399 6.33649 6.60359 6.77750 7.07876 7.12798 7.55712 8.11709 8.70534 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002353 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.892959 B =11899.367841 C =13044.734539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.079 3.921 6 N -0.480 5.480 7 C 0.041 3.959 8 C 0.567 3.433 9 O -0.552 6.552 10 N -0.697 5.697 11 C 0.147 3.853 12 H 0.082 0.918 13 C -0.127 4.127 14 C 0.038 3.962 15 N -0.511 5.511 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.616 6.616 19 N -0.573 5.573 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.044 3.956 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.188 0.812 35 H 0.414 0.586 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.071 0.929 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 25.243 -9.883 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.081 4.081 6 N -0.191 5.191 7 C -0.096 4.096 8 C 0.353 3.647 9 O -0.431 6.431 10 N -0.348 5.348 11 C 0.042 3.958 12 H 0.100 0.900 13 C -0.166 4.166 14 C -0.089 4.089 15 N -0.236 5.236 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.502 6.502 19 N -0.210 5.210 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.085 4.085 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.824 24.346 -8.851 26.552 hybrid contribution 1.373 0.054 0.056 1.376 sum -4.450 24.400 -8.795 26.316 Atomic orbital electron populations 1.20992 0.88904 1.03866 1.03251 1.21168 0.98770 0.92839 0.95999 1.21986 0.94738 0.98244 0.96188 1.22838 0.95227 1.00664 0.96133 1.23384 1.01791 0.87307 0.95651 1.67480 1.06878 1.33962 1.10775 1.20837 0.90511 0.93211 1.05014 1.18249 0.86557 0.83784 0.76073 1.90715 1.14009 1.87183 1.51173 1.45799 1.11512 1.04693 1.72778 1.21742 0.94604 0.81483 0.98005 0.89958 1.22722 1.02996 0.95307 0.95612 1.22992 1.01691 0.94550 0.89711 1.64439 1.32895 1.05371 1.20939 1.21996 0.95719 0.96753 0.93669 1.20733 0.82246 0.82612 0.91794 1.90485 1.63220 1.57637 1.38811 1.41926 1.31315 1.38725 1.09049 1.19634 1.15993 1.23803 0.86637 0.90424 1.26015 0.96715 0.96051 1.02454 1.69666 1.27512 1.29997 1.28918 0.84951 0.77676 0.78492 0.77366 1.19694 1.19449 1.19864 1.23267 0.95239 0.88926 1.01059 0.91209 0.89416 0.90470 0.80868 0.80227 0.79522 0.74953 0.90018 0.89904 0.91691 0.88708 0.90969 0.86676 0.76974 0.91292 0.91084 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 8.74 71.24 0.62 -1.44 16 2 C -0.08 -1.61 5.93 -19.52 -0.12 -1.72 16 3 C -0.09 -0.99 9.83 22.45 0.22 -0.77 16 4 C -0.13 -1.20 10.11 22.44 0.23 -0.98 16 5 C 0.08 1.12 11.18 84.83 0.95 2.07 16 6 N -0.48 -10.47 9.55 -184.92 -1.77 -12.23 16 7 C 0.04 0.98 6.75 41.89 0.28 1.26 16 8 C 0.57 16.01 7.76 86.88 0.67 16.68 16 9 O -0.55 -17.62 13.02 -3.76 -0.05 -17.67 16 10 N -0.70 -18.91 5.14 -439.40 -2.26 -21.16 16 11 C 0.15 4.31 3.34 46.20 0.15 4.46 16 12 H 0.08 2.77 7.69 -2.39 -0.02 2.75 16 13 C -0.13 -3.03 6.67 31.47 0.21 -2.82 16 14 C 0.04 0.92 6.70 86.44 0.58 1.50 16 15 N -0.51 -17.14 5.10 -887.58 -4.53 -21.67 16 16 C 0.05 1.75 5.31 85.56 0.45 2.20 16 17 C 0.44 21.10 7.39 87.66 0.65 21.74 16 18 O -0.62 -34.43 13.93 -3.07 -0.04 -34.47 16 19 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 23 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 24 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 C 0.04 1.49 5.20 86.65 0.45 1.94 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 31 H 0.08 1.78 5.85 -2.39 -0.01 1.77 16 32 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.41 10.52 7.88 -92.70 -0.73 9.79 16 36 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.35 7.68 -2.39 -0.02 1.34 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.20 7.98 -2.39 -0.02 2.19 16 41 H 0.12 3.55 8.14 -2.38 -0.02 3.53 16 42 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 43 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.07 3.04 6.47 -2.39 -0.02 3.03 16 45 H 0.05 1.57 7.89 -2.39 -0.02 1.55 16 Total: -1.00 -74.46 373.68 -1.75 -76.20 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.42 Total: 40.52 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.64 Total: 25.81 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -9.89 Total: -135.70 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.09 Total: -52.14 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.46 -1.75 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318244425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.911 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds