Wall clock time and date at job start Tue Mar 31 2020 17:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34767 * 125.64608 * 2 1 4 4 C 1.40877 * 107.05813 * 180.02562 * 3 2 1 5 5 C 1.36156 * 106.72790 * 0.02562 * 4 3 2 6 6 C 1.47331 * 125.94740 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63276 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.41991 * 179.97438 * 7 6 5 9 9 C 1.47749 * 126.30169 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99703 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99873 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00003 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47232 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.46825 * 55.00246 * 13 12 11 15 15 C 1.53001 * 109.47053 * 295.00594 * 13 12 11 16 16 C 1.52994 * 109.47175 * 175.00031 * 13 12 11 17 17 N 1.46502 * 109.47289 * 185.00348 * 16 13 12 18 18 C 1.36934 * 120.00082 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47119 * 59.99719 * 22 20 18 24 24 H 1.48503 * 109.47417 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47093 * 300.00146 * 22 20 18 26 26 N 1.31857 * 107.39334 * 359.76425 * 8 7 6 27 27 N 1.28447 * 110.51109 * 0.40018 * 26 8 7 28 28 H 0.97001 * 125.03132 * 179.86340 * 27 26 8 29 29 O 1.34330 * 125.64907 * 180.27107 * 2 1 3 30 30 H 1.09000 * 109.47404 * 90.00125 * 1 2 3 31 31 H 1.09001 * 109.47385 * 209.99788 * 1 2 3 32 32 H 1.09003 * 109.47315 * 329.99561 * 1 2 3 33 33 H 1.08000 * 126.47307 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.64027 * 179.97438 * 4 3 2 35 35 H 1.08000 * 127.28990 * 0.02562 * 7 6 5 36 36 H 0.97003 * 119.99755 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47399 * 300.00124 * 12 11 9 38 38 H 1.09005 * 109.46600 * 59.99964 * 12 11 9 39 39 H 1.08995 * 109.46688 * 299.99498 * 15 13 12 40 40 H 1.08990 * 109.47157 * 60.00062 * 15 13 12 41 41 H 1.09007 * 109.46776 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.47639 * 305.00510 * 16 13 12 43 43 H 1.09001 * 109.46793 * 65.00171 * 16 13 12 44 44 H 0.96994 * 119.99757 * 0.02562 * 17 16 13 45 45 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2923 1.0952 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5834 -0.7147 -0.0015 6 6 4.7474 -1.6179 -0.0029 7 6 4.7193 -2.9877 -0.0034 8 6 6.0717 -3.3907 -0.0054 9 6 6.5699 -4.7816 -0.0071 10 8 5.7837 -5.7088 -0.0064 11 7 7.8960 -5.0224 -0.0095 12 6 8.3900 -6.4016 -0.0106 13 6 9.9200 -6.3953 -0.0140 14 1 10.2827 -5.8044 0.8271 15 6 10.4246 -5.7834 -1.3224 16 6 10.4362 -7.8301 0.1105 17 7 11.8965 -7.8154 0.2275 18 6 12.5854 -8.9924 0.3506 19 1 12.0522 -9.9316 0.3618 20 6 13.9690 -8.9785 0.4608 21 7 14.6188 -7.8340 0.4467 22 14 14.9089 -10.5841 0.6280 23 1 14.6525 -11.4340 -0.5625 24 1 16.3627 -10.2985 0.7290 25 1 14.4587 -11.2962 1.8509 26 7 6.8088 -2.2974 -0.0112 27 7 6.0629 -1.2517 -0.0047 28 1 6.3862 -0.3371 -0.0052 29 8 2.2898 -1.0916 -0.0052 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9607 2.1230 -0.0004 34 1 4.5147 1.2620 -0.0012 35 1 3.8469 -3.6242 -0.0032 36 1 8.5232 -4.2825 -0.0105 37 1 8.0304 -6.9172 0.8798 38 1 8.0272 -6.9167 -0.9002 39 1 10.0619 -6.3743 -2.1634 40 1 10.0569 -4.7612 -1.4110 41 1 11.5147 -5.7785 -1.3245 42 1 10.0054 -8.2957 0.9970 43 1 10.1482 -8.3979 -0.7743 44 1 12.3752 -6.9719 0.2178 45 1 15.5857 -7.8242 0.5241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319284177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:33 Heat of formation + Delta-G solvation = 54.177339 kcal Electronic energy + Delta-G solvation = -26404.884968 eV Core-core repulsion = 22425.810680 eV Total energy + Delta-G solvation = -3979.074288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33029 -42.70241 -39.44828 -36.77013 -34.36021 -33.84800 -33.41948 -32.56702 -32.07361 -30.90672 -29.95084 -26.92287 -26.56205 -25.55282 -23.92679 -22.63055 -22.36932 -21.97718 -20.83811 -20.37872 -19.61463 -19.08537 -17.48362 -16.91276 -16.90481 -16.34859 -16.05308 -15.83766 -15.16859 -14.97443 -14.58757 -14.24511 -14.13217 -13.90883 -13.73676 -13.57717 -13.54142 -13.45549 -13.08805 -12.92552 -12.58513 -12.39235 -12.26307 -12.00145 -11.45029 -11.02308 -10.86986 -10.74698 -10.66988 -10.54303 -10.40429 -10.22091 -10.16759 -9.97047 -9.81910 -9.63990 -8.99186 -8.83746 -8.41740 -6.88588 -5.73600 -3.01802 0.48242 1.33867 1.74202 1.74690 2.36263 2.65173 3.13716 3.27569 3.47181 3.51246 3.52445 3.88403 4.06438 4.25232 4.36020 4.62404 4.66000 4.84011 4.89606 4.94921 5.08973 5.12877 5.18681 5.26344 5.27818 5.41107 5.45032 5.51061 5.61248 5.86755 5.89171 5.90379 6.01990 6.03551 6.15493 6.30238 6.34978 6.44407 6.51266 6.54785 6.70435 6.82363 6.91779 7.26613 7.57905 7.73348 8.15623 8.45584 9.56763 10.14572 10.49441 11.49346 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.043041 B = 0.001562 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.388524 B =17917.816223 C =18402.292078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.002 3.998 3 C -0.208 4.208 4 C -0.188 4.188 5 C 0.052 3.948 6 C 0.075 3.925 7 C -0.141 4.141 8 C -0.005 4.005 9 C 0.600 3.400 10 O -0.531 6.531 11 N -0.709 5.709 12 C 0.126 3.874 13 C -0.111 4.111 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.161 3.839 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.234 5.234 27 N -0.365 5.365 28 H 0.449 0.551 29 O -0.158 6.158 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.821 22.913 -1.783 36.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.227 4.227 4 C -0.208 4.208 5 C 0.000 4.000 6 C -0.049 4.049 7 C -0.169 4.169 8 C -0.165 4.165 9 C 0.383 3.617 10 O -0.406 6.406 11 N -0.360 5.360 12 C 0.002 3.998 13 C -0.130 4.130 14 H 0.096 0.904 15 C -0.200 4.200 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 N -0.071 5.071 27 N -0.083 5.083 28 H 0.295 0.705 29 O -0.053 6.053 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -27.326 22.014 -1.778 35.135 hybrid contribution 0.560 0.329 0.105 0.658 sum -26.766 22.343 -1.674 34.906 Atomic orbital electron populations 1.20389 0.84479 1.04499 1.03951 1.22669 0.94169 0.83647 1.04387 1.21483 0.92160 0.99715 1.09351 1.21755 0.98843 0.92702 1.07512 1.18693 0.81359 0.91021 1.08925 1.18186 0.83448 0.92247 1.10993 1.21864 0.97653 0.92048 1.05313 1.21931 0.91891 0.92949 1.09722 1.16802 0.82650 0.85316 0.76915 1.90814 1.55930 1.43517 1.50332 1.45918 1.06267 1.10157 1.73696 1.21498 0.94227 0.81364 1.02685 1.21555 0.92474 0.99678 0.99271 0.90445 1.21797 1.02634 0.98970 0.96554 1.20577 0.86453 0.91686 0.98049 1.42327 0.99818 1.06722 1.88643 1.19205 0.89370 0.86447 1.42000 0.91192 1.24724 0.96418 0.96812 1.03041 1.69648 1.07348 1.23746 1.57613 0.86258 0.78954 0.82999 0.77921 1.21281 1.21727 1.21286 1.73582 1.22326 0.93196 1.17986 1.43391 1.02124 1.09000 1.53754 0.70503 1.84039 1.15010 1.34896 1.71355 0.89657 0.90115 0.88965 0.82829 0.83169 0.81194 0.75739 0.90990 0.90999 0.92795 0.93804 0.91153 0.96070 0.95943 0.78201 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.41 36.00 0.37 0.14 16 2 C 0.00 0.02 7.31 -35.54 -0.26 -0.24 16 3 C -0.21 -1.24 10.78 -39.81 -0.43 -1.67 16 4 C -0.19 -1.22 10.85 -39.33 -0.43 -1.65 16 5 C 0.05 0.44 7.17 -36.63 -0.26 0.18 16 6 C 0.08 0.70 7.10 -82.51 -0.59 0.11 16 7 C -0.14 -1.58 10.76 -38.94 -0.42 -2.00 16 8 C -0.01 -0.06 7.11 -82.88 -0.59 -0.65 16 9 C 0.60 8.61 7.83 -12.37 -0.10 8.51 16 10 O -0.53 -9.17 16.91 5.31 0.09 -9.08 16 11 N -0.71 -9.32 5.28 -61.28 -0.32 -9.64 16 12 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 13 C -0.11 -1.76 2.46 -90.62 -0.22 -1.98 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.14 -2.18 8.94 37.16 0.33 -1.85 16 16 C 0.16 3.23 5.65 -4.04 -0.02 3.21 16 17 N -0.73 -18.50 5.33 -59.91 -0.32 -18.82 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 N -0.23 -2.47 11.88 33.36 0.40 -2.07 16 27 N -0.37 -2.87 6.90 33.25 0.23 -2.64 16 28 H 0.45 1.82 8.96 -190.45 -1.71 0.11 16 29 O -0.16 -1.43 10.68 4.44 0.05 -1.38 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.41 4.77 7.37 -40.82 -0.30 4.47 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.56 7.18 -51.93 -0.37 0.19 16 41 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.38 10.12 6.85 -40.82 -0.28 9.84 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -34.99 388.97 -8.84 -43.83 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.65 Total: 7.49 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.87 Total: -3.53 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.71 Total: -60.79 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.14 Total: -10.46 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.99 -8.84 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319284177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.011 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds