Wall clock time and date at job start Tue Mar 31 2020 17:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34767 * 125.64608 * 2 1 4 4 C 1.40877 * 107.05813 * 180.02562 * 3 2 1 5 5 C 1.36156 * 106.72790 * 0.02562 * 4 3 2 6 6 C 1.47331 * 125.94740 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63276 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.41991 * 179.97438 * 7 6 5 9 9 C 1.47749 * 126.30169 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99703 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99873 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00003 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47232 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.46825 * 55.00246 * 13 12 11 15 15 C 1.53001 * 109.47053 * 295.00594 * 13 12 11 16 16 C 1.52994 * 109.47175 * 175.00031 * 13 12 11 17 17 N 1.46502 * 109.47289 * 185.00348 * 16 13 12 18 18 C 1.36934 * 120.00082 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47119 * 59.99719 * 22 20 18 24 24 H 1.48503 * 109.47417 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47093 * 300.00146 * 22 20 18 26 26 N 1.31857 * 107.39334 * 359.76425 * 8 7 6 27 27 N 1.28447 * 110.51109 * 0.40018 * 26 8 7 28 28 H 0.97001 * 125.03132 * 179.86340 * 27 26 8 29 29 O 1.34330 * 125.64907 * 180.27107 * 2 1 3 30 30 H 1.09000 * 109.47404 * 90.00125 * 1 2 3 31 31 H 1.09001 * 109.47385 * 209.99788 * 1 2 3 32 32 H 1.09003 * 109.47315 * 329.99561 * 1 2 3 33 33 H 1.08000 * 126.47307 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.64027 * 179.97438 * 4 3 2 35 35 H 1.08000 * 127.28990 * 0.02562 * 7 6 5 36 36 H 0.97003 * 119.99755 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47399 * 300.00124 * 12 11 9 38 38 H 1.09005 * 109.46600 * 59.99964 * 12 11 9 39 39 H 1.08995 * 109.46688 * 299.99498 * 15 13 12 40 40 H 1.08990 * 109.47157 * 60.00062 * 15 13 12 41 41 H 1.09007 * 109.46776 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.47639 * 305.00510 * 16 13 12 43 43 H 1.09001 * 109.46793 * 65.00171 * 16 13 12 44 44 H 0.96994 * 119.99757 * 0.02562 * 17 16 13 45 45 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2923 1.0952 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5834 -0.7147 -0.0015 6 6 4.7474 -1.6179 -0.0029 7 6 4.7193 -2.9877 -0.0034 8 6 6.0717 -3.3907 -0.0054 9 6 6.5699 -4.7816 -0.0071 10 8 5.7837 -5.7088 -0.0064 11 7 7.8960 -5.0224 -0.0095 12 6 8.3900 -6.4016 -0.0106 13 6 9.9200 -6.3953 -0.0140 14 1 10.2827 -5.8044 0.8271 15 6 10.4246 -5.7834 -1.3224 16 6 10.4362 -7.8301 0.1105 17 7 11.8965 -7.8154 0.2275 18 6 12.5854 -8.9924 0.3506 19 1 12.0522 -9.9316 0.3618 20 6 13.9690 -8.9785 0.4608 21 7 14.6188 -7.8340 0.4467 22 14 14.9089 -10.5841 0.6280 23 1 14.6525 -11.4340 -0.5625 24 1 16.3627 -10.2985 0.7290 25 1 14.4587 -11.2962 1.8509 26 7 6.8088 -2.2974 -0.0112 27 7 6.0629 -1.2517 -0.0047 28 1 6.3862 -0.3371 -0.0052 29 8 2.2898 -1.0916 -0.0052 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9607 2.1230 -0.0004 34 1 4.5147 1.2620 -0.0012 35 1 3.8469 -3.6242 -0.0032 36 1 8.5232 -4.2825 -0.0105 37 1 8.0304 -6.9172 0.8798 38 1 8.0272 -6.9167 -0.9002 39 1 10.0619 -6.3743 -2.1634 40 1 10.0569 -4.7612 -1.4110 41 1 11.5147 -5.7785 -1.3245 42 1 10.0054 -8.2957 0.9970 43 1 10.1482 -8.3979 -0.7743 44 1 12.3752 -6.9719 0.2178 45 1 15.5857 -7.8242 0.5241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319284177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:33 Heat of formation + Delta-G solvation = 29.626379 kcal Electronic energy + Delta-G solvation = -26405.949577 eV Core-core repulsion = 22425.810680 eV Total energy + Delta-G solvation = -3980.138897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.98145 -43.34965 -40.60701 -38.22263 -35.98796 -34.43900 -34.22728 -33.80478 -33.02610 -31.90197 -31.35545 -27.96402 -27.37061 -27.11718 -25.23809 -23.94560 -23.05894 -22.86944 -21.59820 -21.38939 -20.84493 -19.75712 -19.16683 -18.20644 -17.51410 -17.35329 -16.89653 -16.78899 -16.45326 -16.28317 -15.64233 -15.49771 -15.34238 -15.17566 -14.99021 -14.62792 -14.12901 -14.01565 -13.89791 -13.79383 -13.61891 -13.58508 -13.55045 -12.94786 -12.76020 -12.73194 -12.29961 -12.20730 -12.16039 -11.98917 -11.75670 -11.64529 -11.36439 -11.33280 -10.91570 -10.75147 -10.63236 -10.12687 -8.98977 -8.97386 -7.93544 -5.21773 -0.14309 0.40587 1.16586 1.20661 1.48718 1.51671 1.57693 1.76777 1.90553 2.23528 2.27789 2.58320 3.16882 3.31756 3.40072 3.71905 3.78091 3.93485 3.97483 4.01718 4.08644 4.18831 4.36462 4.41225 4.55754 4.57580 4.72005 4.72224 4.75591 4.77524 4.80146 4.94350 4.95276 5.04972 5.06110 5.14701 5.16404 5.28693 5.38782 5.47832 5.51601 5.51639 5.75866 6.04729 6.28661 6.35495 6.65481 7.06719 7.35747 8.11267 8.35619 9.29701 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.043041 B = 0.001562 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.388524 B =17917.816223 C =18402.292078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.004 4.004 3 C -0.217 4.217 4 C -0.171 4.171 5 C 0.014 3.986 6 C 0.094 3.906 7 C -0.167 4.167 8 C -0.025 4.025 9 C 0.601 3.399 10 O -0.567 6.567 11 N -0.700 5.700 12 C 0.136 3.864 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.136 4.136 16 C 0.157 3.843 17 N -0.741 5.741 18 C -0.249 4.249 19 H 0.074 0.926 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.279 1.279 26 N -0.234 5.234 27 N -0.343 5.343 28 H 0.467 0.533 29 O -0.183 6.183 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.033 24.860 -1.879 38.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.236 4.236 4 C -0.191 4.191 5 C -0.037 4.037 6 C -0.032 4.032 7 C -0.195 4.195 8 C -0.183 4.183 9 C 0.386 3.614 10 O -0.445 6.445 11 N -0.351 5.351 12 C 0.012 3.988 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.193 4.193 16 C 0.030 3.970 17 N -0.385 5.385 18 C -0.381 4.381 19 H 0.092 0.908 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.205 1.205 26 N -0.073 5.073 27 N -0.063 5.063 28 H 0.317 0.683 29 O -0.079 6.079 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.197 0.803 34 H 0.196 0.804 35 H 0.182 0.818 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -28.549 23.984 -1.877 37.334 hybrid contribution 0.774 -0.130 0.129 0.795 sum -27.775 23.854 -1.748 36.654 Atomic orbital electron populations 1.20588 0.82325 1.05565 1.04971 1.23460 0.95561 0.83384 1.03044 1.21888 0.91808 1.00802 1.09079 1.22206 1.00273 0.91983 1.04682 1.18756 0.81101 0.91685 1.12132 1.18206 0.84182 0.91703 1.09071 1.21890 0.97220 0.93178 1.07180 1.21604 0.92449 0.92392 1.11864 1.17033 0.82454 0.85914 0.76032 1.90786 1.56752 1.44846 1.52073 1.45773 1.06225 1.09847 1.73280 1.21271 0.92802 0.82134 1.02563 1.21334 0.93347 0.96971 0.99706 0.90405 1.21726 1.00856 1.00650 0.96092 1.20722 0.83846 0.94565 0.97853 1.42496 1.01799 1.05618 1.88544 1.19616 0.89982 0.87586 1.40873 0.90784 1.25533 0.97399 1.00008 1.03614 1.69802 1.07192 1.25732 1.59119 0.85221 0.77163 0.79264 0.78158 1.20463 1.22035 1.20495 1.73512 1.22380 0.93272 1.18087 1.43410 1.01549 1.09394 1.51994 0.68318 1.84024 1.15557 1.36368 1.71971 0.88546 0.90200 0.86733 0.80274 0.80399 0.81819 0.74723 0.91350 0.91038 0.92738 0.91038 0.93732 0.96019 0.95838 0.79124 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.41 71.23 0.74 0.41 16 2 C 0.00 -0.04 7.31 24.89 0.18 0.14 16 3 C -0.22 -2.03 10.78 22.12 0.24 -1.79 16 4 C -0.17 -1.80 10.85 22.43 0.24 -1.56 16 5 C 0.01 0.23 7.17 24.18 0.17 0.40 16 6 C 0.09 1.66 7.10 40.51 0.29 1.95 16 7 C -0.17 -3.83 10.76 22.69 0.24 -3.59 16 8 C -0.02 -0.61 7.11 42.36 0.30 -0.30 16 9 C 0.60 17.35 7.83 86.76 0.68 18.03 16 10 O -0.57 -20.07 16.91 -3.92 -0.07 -20.13 16 11 N -0.70 -17.97 5.28 -466.06 -2.46 -20.43 16 12 C 0.14 3.83 5.06 86.38 0.44 4.27 16 13 C -0.09 -2.95 2.46 -10.79 -0.03 -2.98 16 14 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 15 C -0.14 -4.07 8.94 71.98 0.64 -3.43 16 16 C 0.16 6.32 5.65 86.38 0.49 6.80 16 17 N -0.74 -37.88 5.33 -343.46 -1.83 -39.71 16 18 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 21 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 22 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 N -0.23 -4.68 11.88 -48.37 -0.57 -5.25 16 27 N -0.34 -4.82 6.90 -48.72 -0.34 -5.16 16 28 H 0.47 2.61 8.96 -220.00 -1.97 0.64 16 29 O -0.18 -3.24 10.68 -7.01 -0.07 -3.31 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.42 9.23 7.37 -92.71 -0.68 8.55 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.73 7.18 -2.39 -0.02 1.71 16 41 H 0.04 1.58 7.18 -2.38 -0.02 1.56 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.38 20.17 6.85 -92.71 -0.64 19.53 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -75.98 388.97 0.66 -75.31 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -2.24 Total: 27.81 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.94 Total: 1.33 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -4.92 Total: -129.62 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.14 Total: -23.45 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -75.98 0.66 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319284177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.941 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds