Wall clock time and date at job start Tue Mar 31 2020 16:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.53359 * 2 1 4 4 C 1.38487 * 119.24391 * 179.97438 * 3 2 1 5 5 C 1.39339 * 118.35154 * 0.02562 * 4 3 2 6 6 N 1.39752 * 120.48975 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00243 * 34.91140 * 6 5 4 8 8 O 1.21381 * 120.00169 * 5.11369 * 7 6 5 9 9 C 1.49356 * 120.00141 * 185.11160 * 7 6 5 10 10 O 1.21357 * 119.99981 * 0.02562 * 9 7 6 11 11 N 1.34776 * 120.00181 * 179.72118 * 9 7 6 12 12 C 1.46495 * 120.00517 * 180.27462 * 11 9 7 13 13 C 1.53034 * 109.46261 * 275.03507 * 12 11 9 14 14 C 1.53193 * 109.31477 * 178.59796 * 13 12 11 15 15 N 1.46931 * 108.76495 * 54.65274 * 14 13 12 16 16 C 1.36933 * 120.62916 * 126.40675 * 15 14 13 17 17 H 1.07999 * 120.00413 * 329.83394 * 16 15 14 18 18 C 1.38813 * 119.99798 * 149.83474 * 16 15 14 19 19 N 1.31620 * 120.00138 * 343.62470 * 18 16 15 20 20 Si 1.86802 * 119.99859 * 163.62479 * 18 16 15 21 21 H 1.48498 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47115 * 119.99970 * 20 18 16 23 23 H 1.48507 * 109.46839 * 240.00082 * 20 18 16 24 24 C 1.46920 * 118.73609 * 306.38489 * 15 14 13 25 25 C 1.53039 * 109.46262 * 154.97630 * 12 11 9 26 26 C 1.38898 * 119.01808 * 0.26947 * 5 4 3 27 27 N 1.31810 * 120.65546 * 359.43861 * 26 5 4 28 28 H 1.09003 * 109.47531 * 89.99872 * 1 2 3 29 29 H 1.09007 * 109.47016 * 209.99839 * 1 2 3 30 30 H 1.09000 * 109.47164 * 329.99555 * 1 2 3 31 31 H 1.08001 * 120.37549 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.82360 * 179.97438 * 4 3 2 33 33 H 0.97006 * 120.00180 * 214.91146 * 6 5 4 34 34 H 0.97005 * 119.99571 * 0.28526 * 11 9 7 35 35 H 1.09005 * 109.45747 * 35.00416 * 12 11 9 36 36 H 1.09000 * 109.49913 * 298.56093 * 13 12 11 37 37 H 1.08999 * 109.50131 * 58.66104 * 13 12 11 38 38 H 1.09002 * 109.59963 * 294.86320 * 14 13 12 39 39 H 1.08997 * 109.70525 * 174.50448 * 14 13 12 40 40 H 0.97001 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.59007 * 293.82099 * 24 15 14 42 42 H 1.09003 * 109.70404 * 173.46409 * 24 15 14 43 43 H 1.09001 * 109.49769 * 301.33742 * 25 12 11 44 44 H 1.08996 * 109.49688 * 61.40667 * 25 12 11 45 45 H 1.08006 * 119.67541 * 179.70080 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2032 0.0000 4 6 3.5735 1.1962 0.0005 5 6 4.2290 -0.0334 0.0005 6 7 5.6252 -0.0926 0.0016 7 6 6.3386 0.8348 0.6705 8 8 5.7695 1.6661 1.3477 9 6 7.8293 0.8398 0.5787 10 8 8.3982 0.0090 -0.0987 11 7 8.5423 1.7706 1.2431 12 6 10.0042 1.7792 1.1482 13 6 10.5877 0.8082 2.1771 14 6 12.1144 0.7937 2.0513 15 7 12.6117 2.1710 2.1719 16 6 13.5798 2.4855 3.0878 17 1 13.6499 1.9306 4.0117 18 6 14.4712 3.5177 2.8288 19 7 14.6069 3.9781 1.6032 20 14 15.4781 4.2531 4.2197 21 1 15.1430 3.5639 5.4916 22 1 16.9241 4.0797 3.9293 23 1 15.1682 5.7002 4.3436 24 6 12.0508 3.2042 1.2907 25 6 10.5248 3.1915 1.4249 26 6 3.4741 -1.1993 -0.0058 27 7 2.1570 -1.1473 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6471 2.1377 0.0004 32 1 4.1315 2.1208 0.0001 33 1 6.0810 -0.8012 -0.4791 34 1 8.0875 2.4349 1.7843 35 1 10.3049 1.4710 0.1468 36 1 10.3082 1.1300 3.1804 37 1 10.1983 -0.1932 1.9941 38 1 12.3974 0.3867 1.0806 39 1 12.5426 0.1799 2.8437 40 1 15.2295 4.6995 1.4223 41 1 12.3286 2.9938 0.2578 42 1 12.4349 4.1824 1.5803 43 1 10.0907 3.8866 0.7062 44 1 10.2455 3.4908 2.4350 45 1 3.9712 -2.1582 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319868872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:19 Heat of formation + Delta-G solvation = -11.578745 kcal Electronic energy + Delta-G solvation = -27531.653847 eV Core-core repulsion = 23549.728161 eV Total energy + Delta-G solvation = -3981.925686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47476 -40.30165 -38.93179 -37.43565 -35.94275 -34.54749 -32.71683 -32.22040 -32.09175 -30.27185 -29.59101 -27.92331 -25.77978 -24.40536 -24.08319 -22.61111 -22.30272 -21.57330 -20.43555 -19.73861 -18.81307 -17.79493 -17.00256 -16.75930 -16.68642 -16.30673 -15.72945 -15.52505 -14.89868 -14.78308 -14.47572 -14.18759 -14.13233 -13.78254 -13.61781 -13.55367 -13.06872 -12.94256 -12.72596 -12.62876 -12.49378 -12.45421 -11.90567 -11.54884 -11.23218 -11.20471 -10.94681 -10.78629 -10.57775 -10.37989 -10.16881 -10.12098 -10.07090 -9.88016 -9.71856 -9.50862 -8.99232 -8.67210 -8.52850 -6.72426 -5.85320 -3.29592 0.48396 0.86999 1.30970 2.04058 2.97110 3.33036 3.36098 3.40005 3.42184 3.44252 3.96020 4.22393 4.37841 4.45031 4.45756 4.59035 4.84269 5.18420 5.19182 5.20582 5.21338 5.31036 5.39460 5.44430 5.45799 5.65193 5.71867 5.74619 5.79442 5.95826 6.04298 6.19426 6.28453 6.39078 6.42025 6.46521 6.56286 6.68635 6.73603 6.90260 7.18670 7.22085 7.44427 7.54157 7.57534 7.75936 7.87420 8.39939 9.15133 9.77469 10.35182 11.23758 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038006 B = 0.001928 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.553168 B =14522.158111 C =14787.153554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.110 3.890 3 C -0.150 4.150 4 C -0.072 4.072 5 C 0.089 3.911 6 N -0.643 5.643 7 C 0.510 3.490 8 O -0.501 6.501 9 C 0.506 3.494 10 O -0.518 6.518 11 N -0.686 5.686 12 C 0.148 3.852 13 C -0.141 4.141 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.176 3.824 25 C -0.148 4.148 26 C 0.089 3.911 27 N -0.466 5.466 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.426 0.574 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.893 -5.991 -4.751 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.029 4.029 3 C -0.170 4.170 4 C -0.100 4.100 5 C -0.008 4.008 6 N -0.291 5.291 7 C 0.292 3.708 8 O -0.374 6.374 9 C 0.285 3.715 10 O -0.395 6.395 11 N -0.337 5.337 12 C 0.046 3.954 13 C -0.181 4.181 14 C 0.021 3.979 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.049 3.951 25 C -0.188 4.188 26 C -0.071 4.071 27 N -0.175 5.175 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.265 0.735 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -25.147 -6.602 -4.790 26.436 hybrid contribution 1.115 1.213 0.681 1.783 sum -24.031 -5.388 -4.109 24.968 Atomic orbital electron populations 1.20695 0.88548 1.03578 1.03117 1.21329 0.97258 0.88243 0.96022 1.21898 0.93954 0.99538 1.01643 1.21617 0.94563 0.97726 0.96112 1.18786 0.83221 0.95551 1.03226 1.43085 1.04094 1.30892 1.51076 1.20663 0.89222 0.81535 0.79378 1.90785 1.72062 1.36946 1.37583 1.19694 0.86837 0.83269 0.81707 1.90791 1.71373 1.37486 1.39819 1.46243 1.08784 1.31084 1.47586 1.21294 0.75331 0.97981 1.00838 1.22415 0.99314 0.97823 0.98546 1.20876 0.89948 0.88227 0.98862 1.44074 1.43277 1.01748 1.42342 1.19205 1.06642 1.16404 0.96210 0.91635 1.25113 0.97089 1.01321 0.95921 1.70028 1.37944 1.29037 1.17552 0.86229 0.79737 0.78967 0.81865 1.20208 1.21663 1.21524 1.20712 0.85642 0.95365 0.93337 1.22582 1.01649 0.93276 1.01287 1.22632 0.89353 0.96969 0.98136 1.67519 1.08581 1.29256 1.12175 0.90365 0.90432 0.90629 0.84227 0.83683 0.73502 0.75534 0.89383 0.91971 0.92573 0.96043 0.92312 0.93587 0.95872 0.89202 0.92444 0.91811 0.82149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.16 36.00 0.37 -0.20 16 2 C 0.11 0.95 6.78 -82.56 -0.56 0.39 16 3 C -0.15 -1.23 9.73 -39.47 -0.38 -1.61 16 4 C -0.07 -0.71 8.76 -39.08 -0.34 -1.05 16 5 C 0.09 0.87 6.27 -83.59 -0.52 0.34 16 6 N -0.64 -6.23 5.33 -10.20 -0.05 -6.28 16 7 C 0.51 6.08 7.64 -11.63 -0.09 5.99 16 8 O -0.50 -6.70 14.31 5.47 0.08 -6.62 16 9 C 0.51 6.84 7.85 -11.63 -0.09 6.75 16 10 O -0.52 -8.04 16.14 5.49 0.09 -7.95 16 11 N -0.69 -9.38 5.07 -54.23 -0.27 -9.65 16 12 C 0.15 2.41 2.42 -67.89 -0.16 2.25 16 13 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 14 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 15 N -0.59 -14.29 2.98 -172.32 -0.51 -14.80 16 16 C -0.25 -6.81 9.56 -15.06 -0.14 -6.95 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 19 N -0.90 -25.52 11.31 55.49 0.63 -24.89 16 20 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.18 3.97 5.28 -3.71 -0.02 3.95 16 25 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 26 C 0.09 0.81 11.12 -17.32 -0.19 0.62 16 27 N -0.47 -4.69 10.26 -9.30 -0.10 -4.78 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.15 1.47 6.64 -52.49 -0.35 1.12 16 33 H 0.43 3.39 8.30 -40.82 -0.34 3.05 16 34 H 0.41 5.03 8.07 -40.82 -0.33 4.70 16 35 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 2.27 6.21 -51.93 -0.32 1.94 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -31.42 374.78 -8.42 -39.84 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.34 Total: 5.10 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -2.55 Total: 8.21 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.31 Total: -60.41 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.17 Total: -14.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.42 -8.42 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319868872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.258 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds