Wall clock time and date at job start Tue Mar 31 2020 16:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.53359 * 2 1 4 4 C 1.38487 * 119.24391 * 179.97438 * 3 2 1 5 5 C 1.39339 * 118.35154 * 0.02562 * 4 3 2 6 6 N 1.39752 * 120.48975 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00243 * 34.91140 * 6 5 4 8 8 O 1.21381 * 120.00169 * 5.11369 * 7 6 5 9 9 C 1.49356 * 120.00141 * 185.11160 * 7 6 5 10 10 O 1.21357 * 119.99981 * 0.02562 * 9 7 6 11 11 N 1.34776 * 120.00181 * 179.72118 * 9 7 6 12 12 C 1.46495 * 120.00517 * 180.27462 * 11 9 7 13 13 C 1.53034 * 109.46261 * 275.03507 * 12 11 9 14 14 C 1.53193 * 109.31477 * 178.59796 * 13 12 11 15 15 N 1.46931 * 108.76495 * 54.65274 * 14 13 12 16 16 C 1.36933 * 120.62916 * 126.40675 * 15 14 13 17 17 H 1.07999 * 120.00413 * 329.83394 * 16 15 14 18 18 C 1.38813 * 119.99798 * 149.83474 * 16 15 14 19 19 N 1.31620 * 120.00138 * 343.62470 * 18 16 15 20 20 Si 1.86802 * 119.99859 * 163.62479 * 18 16 15 21 21 H 1.48498 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47115 * 119.99970 * 20 18 16 23 23 H 1.48507 * 109.46839 * 240.00082 * 20 18 16 24 24 C 1.46920 * 118.73609 * 306.38489 * 15 14 13 25 25 C 1.53039 * 109.46262 * 154.97630 * 12 11 9 26 26 C 1.38898 * 119.01808 * 0.26947 * 5 4 3 27 27 N 1.31810 * 120.65546 * 359.43861 * 26 5 4 28 28 H 1.09003 * 109.47531 * 89.99872 * 1 2 3 29 29 H 1.09007 * 109.47016 * 209.99839 * 1 2 3 30 30 H 1.09000 * 109.47164 * 329.99555 * 1 2 3 31 31 H 1.08001 * 120.37549 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.82360 * 179.97438 * 4 3 2 33 33 H 0.97006 * 120.00180 * 214.91146 * 6 5 4 34 34 H 0.97005 * 119.99571 * 0.28526 * 11 9 7 35 35 H 1.09005 * 109.45747 * 35.00416 * 12 11 9 36 36 H 1.09000 * 109.49913 * 298.56093 * 13 12 11 37 37 H 1.08999 * 109.50131 * 58.66104 * 13 12 11 38 38 H 1.09002 * 109.59963 * 294.86320 * 14 13 12 39 39 H 1.08997 * 109.70525 * 174.50448 * 14 13 12 40 40 H 0.97001 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.59007 * 293.82099 * 24 15 14 42 42 H 1.09003 * 109.70404 * 173.46409 * 24 15 14 43 43 H 1.09001 * 109.49769 * 301.33742 * 25 12 11 44 44 H 1.08996 * 109.49688 * 61.40667 * 25 12 11 45 45 H 1.08006 * 119.67541 * 179.70080 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2032 0.0000 4 6 3.5735 1.1962 0.0005 5 6 4.2290 -0.0334 0.0005 6 7 5.6252 -0.0926 0.0016 7 6 6.3386 0.8348 0.6705 8 8 5.7695 1.6661 1.3477 9 6 7.8293 0.8398 0.5787 10 8 8.3982 0.0090 -0.0987 11 7 8.5423 1.7706 1.2431 12 6 10.0042 1.7792 1.1482 13 6 10.5877 0.8082 2.1771 14 6 12.1144 0.7937 2.0513 15 7 12.6117 2.1710 2.1719 16 6 13.5798 2.4855 3.0878 17 1 13.6499 1.9306 4.0117 18 6 14.4712 3.5177 2.8288 19 7 14.6069 3.9781 1.6032 20 14 15.4781 4.2531 4.2197 21 1 15.1430 3.5639 5.4916 22 1 16.9241 4.0797 3.9293 23 1 15.1682 5.7002 4.3436 24 6 12.0508 3.2042 1.2907 25 6 10.5248 3.1915 1.4249 26 6 3.4741 -1.1993 -0.0058 27 7 2.1570 -1.1473 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6471 2.1377 0.0004 32 1 4.1315 2.1208 0.0001 33 1 6.0810 -0.8012 -0.4791 34 1 8.0875 2.4349 1.7843 35 1 10.3049 1.4710 0.1468 36 1 10.3082 1.1300 3.1804 37 1 10.1983 -0.1932 1.9941 38 1 12.3974 0.3867 1.0806 39 1 12.5426 0.1799 2.8437 40 1 15.2295 4.6995 1.4223 41 1 12.3286 2.9938 0.2578 42 1 12.4349 4.1824 1.5803 43 1 10.0907 3.8866 0.7062 44 1 10.2455 3.4908 2.4350 45 1 3.9712 -2.1582 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319868872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:18 Heat of formation + Delta-G solvation = -33.141042 kcal Electronic energy + Delta-G solvation = -27532.588858 eV Core-core repulsion = 23549.728161 eV Total energy + Delta-G solvation = -3982.860697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.35455 -41.19908 -40.00192 -38.89759 -36.86253 -35.97042 -33.95975 -33.35680 -32.76132 -31.86746 -31.28323 -28.64439 -27.26609 -25.71606 -24.76899 -23.99792 -23.68546 -22.71046 -21.49041 -21.11246 -19.98657 -18.84173 -18.50147 -17.75664 -17.55904 -17.18700 -17.00861 -16.62091 -16.45716 -15.74807 -15.48318 -15.37862 -15.34456 -15.07278 -14.87559 -14.75665 -14.27051 -14.23108 -14.13932 -13.46367 -13.23942 -13.13703 -13.06109 -13.04219 -12.86620 -12.65198 -12.52324 -12.23949 -12.02621 -11.97922 -11.89636 -11.61890 -11.39341 -11.02453 -10.78400 -10.57977 -10.40336 -10.24724 -9.38025 -8.68770 -7.89119 -5.36159 -0.29067 0.18378 0.40253 1.07011 1.46971 1.49514 1.59573 1.96132 2.40166 2.51167 2.71303 3.19039 3.28420 3.40711 3.65744 3.75489 3.79039 3.82129 3.96189 3.97364 4.18596 4.27075 4.43334 4.58906 4.62890 4.69807 4.71318 4.81506 4.83512 4.86080 4.94889 5.01352 5.02637 5.12379 5.12506 5.21618 5.26853 5.30516 5.44665 5.60991 5.65117 5.68902 5.79189 6.19983 6.39576 6.53110 6.79551 6.91358 7.14459 7.83282 8.36387 9.18043 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038006 B = 0.001928 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.553168 B =14522.158111 C =14787.153554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.103 3.897 3 C -0.150 4.150 4 C -0.085 4.085 5 C 0.072 3.928 6 N -0.629 5.629 7 C 0.518 3.482 8 O -0.516 6.516 9 C 0.511 3.489 10 O -0.538 6.538 11 N -0.679 5.679 12 C 0.160 3.840 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.066 0.934 18 C -0.047 4.047 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.180 3.820 25 C -0.132 4.132 26 C 0.089 3.911 27 N -0.488 5.488 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.434 0.566 34 H 0.419 0.581 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.014 0.986 39 H 0.059 0.941 40 H 0.251 0.749 41 H 0.001 0.999 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.212 -6.279 -4.169 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.035 4.035 3 C -0.170 4.170 4 C -0.113 4.113 5 C -0.024 4.024 6 N -0.277 5.277 7 C 0.299 3.701 8 O -0.391 6.391 9 C 0.291 3.709 10 O -0.415 6.415 11 N -0.331 5.331 12 C 0.056 3.944 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.332 5.332 16 C -0.394 4.394 17 H 0.084 0.916 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.215 1.215 24 C 0.054 3.946 25 C -0.171 4.171 26 C -0.071 4.071 27 N -0.198 5.198 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.183 0.817 32 H 0.157 0.843 33 H 0.274 0.726 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.516 -6.922 -4.211 28.684 hybrid contribution 1.758 1.227 0.440 2.188 sum -25.758 -5.695 -3.771 26.648 Atomic orbital electron populations 1.20792 0.86467 1.04424 1.04117 1.21877 0.98759 0.88022 0.94816 1.22179 0.93431 1.00609 1.00746 1.21742 0.95449 0.97536 0.96538 1.18888 0.82938 0.96027 1.04561 1.42942 1.04227 1.30303 1.50231 1.20211 0.88242 0.81929 0.79672 1.90786 1.71954 1.37784 1.38574 1.19902 0.87576 0.82552 0.80894 1.90789 1.71989 1.38192 1.40528 1.45956 1.07554 1.31620 1.47947 1.20914 0.76895 0.96759 0.99788 1.22220 0.96606 0.98859 0.99015 1.20974 0.92252 0.86483 0.98417 1.44326 1.43315 1.03443 1.42164 1.19508 1.06925 1.16254 0.96684 0.91625 1.25834 0.98495 1.02015 0.97909 1.70171 1.38868 1.29567 1.19306 0.85234 0.77814 0.77962 0.79566 1.19136 1.22077 1.21541 1.20522 0.88917 0.93491 0.91665 1.22303 0.97764 0.94729 1.02350 1.22942 0.89271 0.97595 0.97281 1.67595 1.08972 1.30149 1.13091 0.89164 0.90718 0.88668 0.81691 0.84284 0.72562 0.74400 0.90656 0.91597 0.91308 0.96817 0.92272 0.94008 0.98098 0.92255 0.90245 0.91220 0.80206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 71.23 0.72 -0.16 16 2 C 0.10 1.58 6.78 42.56 0.29 1.87 16 3 C -0.15 -2.16 9.73 22.34 0.22 -1.94 16 4 C -0.09 -1.55 8.76 22.59 0.20 -1.35 16 5 C 0.07 1.31 6.27 38.30 0.24 1.55 16 6 N -0.63 -11.28 5.33 -304.52 -1.62 -12.90 16 7 C 0.52 11.56 7.64 87.24 0.67 12.23 16 8 O -0.52 -13.05 14.31 -3.34 -0.05 -13.10 16 9 C 0.51 13.00 7.85 87.24 0.68 13.69 16 10 O -0.54 -15.93 16.14 -3.27 -0.05 -15.98 16 11 N -0.68 -17.34 5.07 -443.85 -2.25 -19.59 16 12 C 0.16 5.02 2.42 45.02 0.11 5.12 16 13 C -0.13 -4.21 5.65 30.67 0.17 -4.03 16 14 C 0.14 5.93 6.52 86.36 0.56 6.50 16 15 N -0.61 -29.71 2.98 -699.09 -2.08 -31.80 16 16 C -0.26 -14.17 9.56 84.03 0.80 -13.37 16 17 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 18 C -0.05 -2.56 4.91 84.86 0.42 -2.14 16 19 N -0.93 -54.15 11.31 21.65 0.24 -53.90 16 20 Si 0.97 44.03 29.58 68.60 2.03 46.06 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 24 C 0.18 8.28 5.28 86.36 0.46 8.74 16 25 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 26 C 0.09 1.49 11.12 84.85 0.94 2.43 16 27 N -0.49 -9.09 10.26 -183.32 -1.88 -10.97 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.09 0.46 8.08 -2.39 -0.02 0.44 16 31 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 2.68 6.64 -2.91 -0.02 2.66 16 33 H 0.43 6.27 8.30 -92.70 -0.77 5.50 16 34 H 0.42 9.39 8.07 -92.70 -0.75 8.64 16 35 H 0.08 2.61 7.58 -2.38 -0.02 2.59 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 40 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.06 3.08 6.21 -2.39 -0.01 3.07 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.75 374.78 0.50 -67.24 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.48 Total: 20.12 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 6.65 Total: 24.82 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -7.60 Total: -129.16 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.10 Total: -29.08 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.75 0.50 -67.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319868872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.101 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds