Wall clock time and date at job start Tue Mar 31 2020 17:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34762 * 125.64630 * 2 1 4 4 C 1.40872 * 107.06035 * 180.02562 * 3 2 1 5 5 C 1.36152 * 106.73079 * 0.02562 * 4 3 2 6 6 C 1.47322 * 125.95330 * 180.02562 * 5 4 3 7 7 C 1.37006 * 126.63439 * 180.02562 * 6 5 4 8 8 C 1.41115 * 105.42024 * 180.02562 * 7 6 5 9 9 C 1.47747 * 126.30048 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00332 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99549 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99702 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.47318 * 35.00106 * 12 11 9 14 14 C 1.52997 * 109.47223 * 275.00170 * 12 11 9 15 15 C 1.52998 * 109.47020 * 154.99846 * 12 11 9 16 16 N 1.46503 * 109.47258 * 305.00203 * 15 12 11 17 17 C 1.46504 * 119.99832 * 270.00267 * 16 15 12 18 18 C 1.36932 * 120.00279 * 90.00147 * 16 15 12 19 19 H 1.08002 * 119.99745 * 20.29703 * 18 16 15 20 20 C 1.38810 * 120.00153 * 200.30744 * 18 16 15 21 21 N 1.31623 * 119.99990 * 15.00952 * 20 18 16 22 22 Si 1.86799 * 120.00167 * 195.01087 * 20 18 16 23 23 H 1.48501 * 109.46904 * 84.99815 * 22 20 18 24 24 H 1.48499 * 109.47358 * 205.00049 * 22 20 18 25 25 H 1.48493 * 109.47014 * 325.00338 * 22 20 18 26 26 N 1.31856 * 107.39295 * 0.22568 * 8 7 6 27 27 N 1.28445 * 110.50760 * 359.61051 * 26 8 7 28 28 H 0.97003 * 125.02450 * 180.12175 * 27 26 8 29 29 O 1.34333 * 125.64993 * 180.31432 * 2 1 3 30 30 H 1.09000 * 109.47466 * 89.99543 * 1 2 3 31 31 H 1.08998 * 109.46913 * 209.99533 * 1 2 3 32 32 H 1.09001 * 109.47134 * 329.99086 * 1 2 3 33 33 H 1.08009 * 126.47339 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.63999 * 179.97438 * 4 3 2 35 35 H 1.07994 * 127.29129 * 0.02562 * 7 6 5 36 36 H 0.97001 * 120.00084 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47445 * 59.99814 * 14 12 11 38 38 H 1.09002 * 109.46837 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46805 * 299.99707 * 14 12 11 40 40 H 1.08997 * 109.47132 * 64.99929 * 15 12 11 41 41 H 1.08997 * 109.47091 * 185.00112 * 15 12 11 42 42 H 1.08992 * 109.47253 * 95.10187 * 17 16 15 43 43 H 1.09004 * 109.47165 * 215.10617 * 17 16 15 44 44 H 1.09004 * 109.47268 * 335.09904 * 17 16 15 45 45 H 0.96997 * 120.00091 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2923 1.0951 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5835 -0.7147 -0.0015 6 6 4.7474 -1.6178 -0.0019 7 6 4.7194 -2.9876 -0.0033 8 6 6.0717 -3.3906 -0.0024 9 6 6.5699 -4.7815 -0.0028 10 8 5.7838 -5.7088 -0.0035 11 7 7.8961 -5.0223 -0.0024 12 6 8.3901 -6.4015 -0.0022 13 1 7.7203 -7.0275 -0.5919 14 6 8.4432 -6.9240 1.4348 15 6 9.7930 -6.4407 -0.6114 16 7 9.7644 -5.8306 -1.9431 17 6 9.4955 -6.6576 -3.1221 18 6 9.9890 -4.4874 -2.0857 19 1 10.4982 -3.9393 -1.3068 20 6 9.5621 -3.8301 -3.2314 21 7 8.6964 -4.4075 -4.0374 22 14 10.2160 -2.1262 -3.6292 23 1 11.5074 -2.2480 -4.3522 24 1 9.2367 -1.4069 -4.4830 25 1 10.4239 -1.3690 -2.3688 26 7 6.8088 -2.2973 0.0044 27 7 6.0629 -1.2517 -0.0004 28 1 6.3862 -0.3371 0.0013 29 8 2.2899 -1.0916 -0.0060 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.9607 2.1230 0.0004 34 1 4.5147 1.2621 -0.0012 35 1 3.8470 -3.6241 -0.0048 36 1 8.5233 -4.2824 -0.0022 37 1 7.4438 -6.8961 1.8688 38 1 8.8112 -7.9501 1.4349 39 1 9.1131 -6.2981 2.0244 40 1 10.4819 -5.8876 0.0269 41 1 10.1248 -7.4758 -0.6931 42 1 8.4340 -6.6104 -3.3646 43 1 10.0779 -6.2876 -3.9660 44 1 9.7749 -7.6903 -2.9130 45 1 8.3978 -3.9481 -4.8378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322300184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:18 Heat of formation + Delta-G solvation = 75.644411 kcal Electronic energy + Delta-G solvation = -28468.769484 eV Core-core repulsion = 24490.626079 eV Total energy + Delta-G solvation = -3978.143406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.92024 -42.19950 -38.81198 -36.20951 -33.90704 -33.51798 -33.03233 -31.84753 -31.16513 -30.52632 -29.69671 -26.38670 -26.11971 -25.54259 -24.09333 -22.26449 -21.94061 -21.49553 -20.44703 -19.94105 -19.39150 -18.64055 -16.96653 -16.55169 -16.46204 -15.89471 -15.47444 -15.31357 -14.81467 -14.54883 -14.05459 -13.78045 -13.63711 -13.47045 -13.41762 -13.30988 -13.13558 -12.98572 -12.78124 -12.64789 -12.16015 -12.07188 -11.81074 -11.33881 -11.25611 -10.82653 -10.80176 -10.66163 -10.36178 -10.34660 -10.20963 -10.00146 -9.76221 -9.75135 -9.43656 -9.22361 -8.50430 -8.19227 -8.00996 -6.74359 -5.68198 -3.11559 0.90302 1.96130 2.13201 2.16945 2.79243 3.14363 3.37720 3.43957 3.45084 3.80308 4.06247 4.30410 4.52196 4.56364 4.67683 4.71564 4.99597 5.12993 5.24729 5.34690 5.40985 5.47838 5.55435 5.58624 5.65158 5.73908 5.85093 5.86792 5.98238 6.05040 6.22344 6.22808 6.31491 6.43260 6.51601 6.58601 6.78783 6.82291 6.94072 6.97808 7.33642 7.42368 7.76559 7.84808 7.90885 8.40308 8.42791 8.97663 9.25982 9.90728 10.39411 11.36323 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003447 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.341337 B = 8120.166639 C = 9492.634846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.206 4.206 4 C -0.196 4.196 5 C 0.065 3.935 6 C 0.062 3.938 7 C -0.141 4.141 8 C 0.006 3.994 9 C 0.603 3.397 10 O -0.552 6.552 11 N -0.671 5.671 12 C 0.117 3.883 13 H 0.079 0.921 14 C -0.160 4.160 15 C 0.142 3.858 16 N -0.598 5.598 17 C 0.163 3.837 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.009 3.991 21 N -0.898 5.898 22 Si 0.896 3.104 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.279 1.279 26 N -0.221 5.221 27 N -0.369 5.369 28 H 0.446 0.554 29 O -0.158 6.158 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.410 0.590 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.042 0.958 44 H -0.003 1.003 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 8.826 10.547 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.225 4.225 4 C -0.217 4.217 5 C 0.013 3.987 6 C -0.061 4.061 7 C -0.169 4.169 8 C -0.154 4.154 9 C 0.386 3.614 10 O -0.430 6.430 11 N -0.320 5.320 12 C 0.009 3.991 13 H 0.097 0.903 14 C -0.219 4.219 15 C 0.013 3.987 16 N -0.320 5.320 17 C 0.019 3.981 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.190 4.190 21 N -0.542 5.542 22 Si 0.726 3.274 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.205 1.205 26 N -0.058 5.058 27 N -0.086 5.086 28 H 0.291 0.709 29 O -0.053 6.053 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.247 0.753 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.731 8.185 10.353 17.010 hybrid contribution -0.059 1.940 -0.554 2.018 sum -10.790 10.125 9.800 17.747 Atomic orbital electron populations 1.20344 0.84698 1.04232 1.03789 1.22595 0.94085 0.83772 1.05258 1.21436 0.92230 0.99517 1.09358 1.21718 0.98711 0.92788 1.08445 1.18776 0.81266 0.91081 1.07589 1.18162 0.83467 0.92258 1.12254 1.21821 0.97746 0.91919 1.05423 1.22026 0.91479 0.93348 1.08546 1.16726 0.83083 0.84919 0.76640 1.90719 1.56298 1.43549 1.52414 1.45588 1.05756 1.09600 1.71023 1.21902 0.99573 0.82570 0.95087 0.90332 1.22163 1.01585 1.00615 0.97521 1.21193 0.92502 0.97123 0.87839 1.43930 1.82791 1.05472 0.99855 1.20795 0.99697 0.88736 0.88914 1.19047 1.30795 0.84380 1.04078 0.91496 1.24894 0.97483 0.97437 0.99208 1.70093 1.31509 1.37814 1.14824 0.86403 0.78107 0.84779 0.78062 1.21638 1.22111 1.20451 1.73694 1.21896 0.93152 1.17033 1.43416 1.01996 1.09022 1.54186 0.70904 1.84038 1.15130 1.34808 1.71374 0.89828 0.90270 0.89177 0.83042 0.83289 0.81584 0.75278 0.92846 0.92166 0.92974 0.93279 0.92829 0.95276 0.93903 0.98431 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.41 36.00 0.37 -0.08 16 2 C -0.01 -0.06 7.31 -35.54 -0.26 -0.32 16 3 C -0.21 -2.00 10.78 -39.82 -0.43 -2.42 16 4 C -0.20 -2.13 10.85 -39.34 -0.43 -2.56 16 5 C 0.06 0.86 7.17 -36.64 -0.26 0.60 16 6 C 0.06 0.94 7.10 -82.52 -0.59 0.36 16 7 C -0.14 -2.46 10.76 -38.94 -0.42 -2.88 16 8 C 0.01 0.12 7.11 -82.88 -0.59 -0.47 16 9 C 0.60 13.09 7.79 -12.37 -0.10 13.00 16 10 O -0.55 -13.07 16.58 5.31 0.09 -12.98 16 11 N -0.67 -13.91 4.48 -54.78 -0.25 -14.16 16 12 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 13 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 14 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 15 C 0.14 2.79 5.36 -4.04 -0.02 2.77 16 16 N -0.60 -14.56 2.82 -181.12 -0.51 -15.07 16 17 C 0.16 4.05 9.02 59.85 0.54 4.59 16 18 C -0.25 -6.62 8.02 -15.06 -0.12 -6.74 16 19 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 20 C 0.01 0.24 5.06 -17.43 -0.09 0.16 16 21 N -0.90 -26.17 10.67 55.49 0.59 -25.58 16 22 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.22 -4.01 11.88 33.36 0.40 -3.61 16 27 N -0.37 -5.32 6.90 33.25 0.23 -5.09 16 28 H 0.45 4.65 8.96 -190.45 -1.71 2.94 16 29 O -0.16 -2.10 10.68 4.42 0.05 -2.05 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 36 H 0.41 8.63 7.11 -40.82 -0.29 8.34 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 41 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 42 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 43 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 44 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.80 385.20 -8.59 -42.39 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.73 Total: 7.74 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.23 Total: 5.91 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.46 Total: -63.52 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.14 Total: -15.03 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.80 -8.59 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322300184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.035 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds