Wall clock time and date at job start Tue Mar 31 2020 17:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34762 * 125.64630 * 2 1 4 4 C 1.40872 * 107.06035 * 180.02562 * 3 2 1 5 5 C 1.36152 * 106.73079 * 0.02562 * 4 3 2 6 6 C 1.47322 * 125.95330 * 180.02562 * 5 4 3 7 7 C 1.37006 * 126.63439 * 180.02562 * 6 5 4 8 8 C 1.41115 * 105.42024 * 180.02562 * 7 6 5 9 9 C 1.47747 * 126.30048 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00332 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99549 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99702 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.47318 * 35.00106 * 12 11 9 14 14 C 1.52997 * 109.47223 * 275.00170 * 12 11 9 15 15 C 1.52998 * 109.47020 * 154.99846 * 12 11 9 16 16 N 1.46503 * 109.47258 * 305.00203 * 15 12 11 17 17 C 1.46504 * 119.99832 * 270.00267 * 16 15 12 18 18 C 1.36932 * 120.00279 * 90.00147 * 16 15 12 19 19 H 1.08002 * 119.99745 * 20.29703 * 18 16 15 20 20 C 1.38810 * 120.00153 * 200.30744 * 18 16 15 21 21 N 1.31623 * 119.99990 * 15.00952 * 20 18 16 22 22 Si 1.86799 * 120.00167 * 195.01087 * 20 18 16 23 23 H 1.48501 * 109.46904 * 84.99815 * 22 20 18 24 24 H 1.48499 * 109.47358 * 205.00049 * 22 20 18 25 25 H 1.48493 * 109.47014 * 325.00338 * 22 20 18 26 26 N 1.31856 * 107.39295 * 0.22568 * 8 7 6 27 27 N 1.28445 * 110.50760 * 359.61051 * 26 8 7 28 28 H 0.97003 * 125.02450 * 180.12175 * 27 26 8 29 29 O 1.34333 * 125.64993 * 180.31432 * 2 1 3 30 30 H 1.09000 * 109.47466 * 89.99543 * 1 2 3 31 31 H 1.08998 * 109.46913 * 209.99533 * 1 2 3 32 32 H 1.09001 * 109.47134 * 329.99086 * 1 2 3 33 33 H 1.08009 * 126.47339 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.63999 * 179.97438 * 4 3 2 35 35 H 1.07994 * 127.29129 * 0.02562 * 7 6 5 36 36 H 0.97001 * 120.00084 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47445 * 59.99814 * 14 12 11 38 38 H 1.09002 * 109.46837 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46805 * 299.99707 * 14 12 11 40 40 H 1.08997 * 109.47132 * 64.99929 * 15 12 11 41 41 H 1.08997 * 109.47091 * 185.00112 * 15 12 11 42 42 H 1.08992 * 109.47253 * 95.10187 * 17 16 15 43 43 H 1.09004 * 109.47165 * 215.10617 * 17 16 15 44 44 H 1.09004 * 109.47268 * 335.09904 * 17 16 15 45 45 H 0.96997 * 120.00091 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2923 1.0951 0.0000 4 6 3.6276 0.6461 -0.0006 5 6 3.5835 -0.7147 -0.0015 6 6 4.7474 -1.6178 -0.0019 7 6 4.7194 -2.9876 -0.0033 8 6 6.0717 -3.3906 -0.0024 9 6 6.5699 -4.7815 -0.0028 10 8 5.7838 -5.7088 -0.0035 11 7 7.8961 -5.0223 -0.0024 12 6 8.3901 -6.4015 -0.0022 13 1 7.7203 -7.0275 -0.5919 14 6 8.4432 -6.9240 1.4348 15 6 9.7930 -6.4407 -0.6114 16 7 9.7644 -5.8306 -1.9431 17 6 9.4955 -6.6576 -3.1221 18 6 9.9890 -4.4874 -2.0857 19 1 10.4982 -3.9393 -1.3068 20 6 9.5621 -3.8301 -3.2314 21 7 8.6964 -4.4075 -4.0374 22 14 10.2160 -2.1262 -3.6292 23 1 11.5074 -2.2480 -4.3522 24 1 9.2367 -1.4069 -4.4830 25 1 10.4239 -1.3690 -2.3688 26 7 6.8088 -2.2973 0.0044 27 7 6.0629 -1.2517 -0.0004 28 1 6.3862 -0.3371 0.0013 29 8 2.2899 -1.0916 -0.0060 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.9607 2.1230 0.0004 34 1 4.5147 1.2621 -0.0012 35 1 3.8470 -3.6241 -0.0048 36 1 8.5233 -4.2824 -0.0022 37 1 7.4438 -6.8961 1.8688 38 1 8.8112 -7.9501 1.4349 39 1 9.1131 -6.2981 2.0244 40 1 10.4819 -5.8876 0.0269 41 1 10.1248 -7.4758 -0.6931 42 1 8.4340 -6.6104 -3.3646 43 1 10.0779 -6.2876 -3.9660 44 1 9.7749 -7.6903 -2.9130 45 1 8.3978 -3.9481 -4.8378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322300184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:17 Heat of formation + Delta-G solvation = 52.857602 kcal Electronic energy + Delta-G solvation = -28469.757594 eV Core-core repulsion = 24490.626079 eV Total energy + Delta-G solvation = -3979.131516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.95195 -43.33054 -40.47365 -37.99854 -35.71478 -34.39557 -34.00684 -33.30302 -32.86876 -31.74485 -31.08072 -28.01994 -27.35181 -27.22905 -25.57185 -23.55014 -23.08393 -22.93323 -21.51788 -21.39931 -20.97954 -19.73467 -18.75843 -18.11404 -17.50015 -17.19036 -16.80796 -16.72270 -16.64280 -15.73269 -15.59548 -15.38711 -15.10338 -14.99141 -14.77461 -14.45702 -14.02416 -13.91534 -13.88274 -13.80008 -13.57604 -13.35275 -13.09473 -12.84908 -12.73881 -12.71599 -12.52768 -12.19950 -12.12540 -11.95193 -11.94457 -11.66356 -11.35258 -11.13039 -10.72480 -10.57896 -10.57241 -9.83092 -8.99267 -8.76211 -7.75843 -5.20046 -0.12865 0.53403 1.17528 1.21904 1.44746 1.46951 1.53586 1.76850 2.05742 2.34396 2.51872 2.54925 3.28509 3.33908 3.40353 3.73572 3.80119 3.91983 4.05727 4.15589 4.27714 4.42601 4.47651 4.56108 4.56725 4.71266 4.73770 4.78004 4.78666 4.86866 4.92983 4.93266 5.02434 5.08276 5.14449 5.20756 5.35210 5.42436 5.51385 5.67756 5.70763 5.76367 5.82856 6.04206 6.35737 6.53894 6.81593 7.19410 7.32085 7.92909 8.37275 9.27784 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003447 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.341337 B = 8120.166639 C = 9492.634846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.005 4.005 3 C -0.214 4.214 4 C -0.173 4.173 5 C 0.017 3.983 6 C 0.091 3.909 7 C -0.172 4.172 8 C -0.020 4.020 9 C 0.595 3.405 10 O -0.584 6.584 11 N -0.670 5.670 12 C 0.117 3.883 13 H 0.045 0.955 14 C -0.146 4.146 15 C 0.141 3.859 16 N -0.612 5.612 17 C 0.178 3.822 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.951 3.049 23 H -0.290 1.290 24 H -0.308 1.308 25 H -0.260 1.260 26 N -0.237 5.237 27 N -0.349 5.349 28 H 0.464 0.536 29 O -0.183 6.183 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.409 0.591 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.080 0.920 42 H -0.008 1.008 43 H 0.018 0.982 44 H 0.032 0.968 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 11.132 12.195 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.233 4.233 4 C -0.194 4.194 5 C -0.034 4.034 6 C -0.034 4.034 7 C -0.200 4.200 8 C -0.179 4.179 9 C 0.379 3.621 10 O -0.464 6.464 11 N -0.318 5.318 12 C 0.010 3.990 13 H 0.064 0.936 14 C -0.205 4.205 15 C 0.014 3.986 16 N -0.334 5.334 17 C 0.033 3.967 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.242 4.242 21 N -0.582 5.582 22 Si 0.781 3.219 23 H -0.217 1.217 24 H -0.236 1.236 25 H -0.185 1.185 26 N -0.075 5.075 27 N -0.069 5.069 28 H 0.313 0.687 29 O -0.080 6.080 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.180 0.820 36 H 0.246 0.754 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.010 0.990 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.529 10.499 12.052 19.141 hybrid contribution -0.223 1.308 -1.012 1.669 sum -10.752 11.808 11.041 19.415 Atomic orbital electron populations 1.20592 0.81980 1.05692 1.04950 1.23542 0.95707 0.83321 1.03038 1.21876 0.91424 1.00897 1.09062 1.22194 1.00464 0.91813 1.04880 1.18706 0.80983 0.91667 1.12044 1.18257 0.84262 0.91698 1.09229 1.21853 0.96983 0.93313 1.07883 1.21814 0.92522 0.92858 1.10733 1.17080 0.83162 0.85714 0.76108 1.90676 1.56965 1.44788 1.54000 1.45660 1.05492 1.10086 1.70589 1.21881 0.98326 0.81652 0.97172 0.93621 1.22036 1.01517 1.02358 0.94601 1.21417 0.92792 0.98637 0.85727 1.44177 1.82554 1.05172 1.01529 1.20505 0.96947 0.90545 0.88746 1.19378 1.28981 0.85206 1.03588 0.90391 1.25564 0.98261 1.00665 0.99731 1.70292 1.33592 1.39117 1.15183 0.85497 0.76834 0.81410 0.78126 1.21702 1.23604 1.18463 1.73579 1.22410 0.93485 1.17991 1.43401 1.01673 1.09251 1.52557 0.68707 1.84026 1.15448 1.36539 1.71974 0.88661 0.90126 0.86399 0.79867 0.80669 0.81997 0.75447 0.94103 0.89480 0.91125 0.91357 0.90182 0.99015 0.96360 0.94979 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 71.23 0.74 0.02 16 2 C -0.01 -0.10 7.31 24.89 0.18 0.09 16 3 C -0.21 -3.44 10.78 22.12 0.24 -3.20 16 4 C -0.17 -3.31 10.85 22.43 0.24 -3.06 16 5 C 0.02 0.44 7.17 24.18 0.17 0.61 16 6 C 0.09 2.75 7.10 40.51 0.29 3.04 16 7 C -0.17 -6.33 10.76 22.69 0.24 -6.08 16 8 C -0.02 -0.83 7.11 42.36 0.30 -0.53 16 9 C 0.59 27.00 7.79 86.76 0.68 27.68 16 10 O -0.58 -29.23 16.58 -3.91 -0.06 -29.29 16 11 N -0.67 -28.26 4.48 -445.49 -2.00 -30.26 16 12 C 0.12 4.49 2.88 44.99 0.13 4.62 16 13 H 0.05 2.06 7.58 -2.38 -0.02 2.04 16 14 C -0.15 -4.33 9.48 71.98 0.68 -3.64 16 15 C 0.14 5.30 5.36 86.38 0.46 5.76 16 16 N -0.61 -29.56 2.82 -726.93 -2.05 -31.61 16 17 C 0.18 8.96 9.02 127.77 1.15 10.11 16 18 C -0.24 -12.51 8.02 84.03 0.67 -11.83 16 19 H 0.08 3.83 7.86 -2.91 -0.02 3.81 16 20 C -0.05 -2.61 5.06 84.86 0.43 -2.18 16 21 N -0.93 -56.39 10.67 21.65 0.23 -56.15 16 22 Si 0.95 44.88 29.58 68.60 2.03 46.91 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 N -0.24 -8.67 11.88 -48.37 -0.57 -9.24 16 27 N -0.35 -9.86 6.90 -48.73 -0.34 -10.20 16 28 H 0.46 8.87 8.96 -220.00 -1.97 6.90 16 29 O -0.18 -4.78 10.68 -7.10 -0.08 -4.86 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.16 5.83 8.06 -2.91 -0.02 5.81 16 36 H 0.41 17.25 7.11 -92.71 -0.66 16.59 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 41 H 0.08 2.61 7.86 -2.39 -0.02 2.59 16 42 H -0.01 -0.49 7.40 -2.39 -0.02 -0.51 16 43 H 0.02 0.97 7.21 -2.38 -0.02 0.95 16 44 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 45 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -76.92 385.20 2.18 -74.74 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.60 Total: 28.58 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.62 Total: 21.38 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -4.73 Total: -137.46 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.14 Total: -34.15 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -76.92 2.18 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322300184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.600 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds