Wall clock time and date at job start Tue Mar 31 2020 16:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31691 * 119.71613 * 2 1 4 4 C 1.31931 * 121.88098 * 180.24590 * 3 2 1 5 5 C 1.38356 * 121.07809 * 359.76362 * 4 3 2 6 6 C 1.38360 * 119.29947 * 359.97438 * 5 4 3 7 7 C 1.39525 * 119.71784 * 179.74865 * 2 1 3 8 8 C 1.47838 * 120.55779 * 0.02562 * 7 2 1 9 9 O 1.21557 * 119.99896 * 353.49327 * 8 7 2 10 10 N 1.34776 * 120.00150 * 173.48934 * 8 7 2 11 11 C 1.46500 * 120.00006 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46821 * 179.97438 * 11 10 8 13 13 H 1.08995 * 112.78870 * 75.80956 * 12 11 10 14 14 C 1.53514 * 113.47337 * 206.61543 * 12 11 10 15 15 C 1.53515 * 83.57332 * 140.79130 * 14 12 11 16 16 N 1.47476 * 87.93304 * 333.97617 * 15 14 12 17 17 C 1.46898 * 111.00216 * 138.70303 * 16 15 14 18 18 C 1.50703 * 109.47389 * 91.52912 * 17 16 15 19 19 O 1.21290 * 119.99569 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99913 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99802 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99759 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00133 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99823 * 359.72970 * 23 21 20 25 25 Si 1.86795 * 120.00242 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46982 * 60.00342 * 25 23 21 27 27 H 1.48501 * 109.47281 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47374 * 300.00274 * 25 23 21 29 29 H 1.08995 * 109.47151 * 263.67346 * 1 2 3 30 30 H 1.08995 * 109.47006 * 23.67813 * 1 2 3 31 31 H 1.09001 * 109.47050 * 143.67542 * 1 2 3 32 32 H 1.07995 * 119.46389 * 179.74956 * 4 3 2 33 33 H 1.07992 * 120.35240 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.84922 * 180.02562 * 6 5 4 35 35 H 0.97005 * 119.99787 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47535 * 60.00044 * 11 10 8 37 37 H 1.08994 * 109.47123 * 299.99317 * 11 10 8 38 38 H 1.09001 * 114.17177 * 27.15212 * 14 12 11 39 39 H 1.08997 * 114.17151 * 254.43725 * 14 12 11 40 40 H 1.08997 * 113.47751 * 219.21000 * 15 14 12 41 41 H 1.08999 * 113.52946 * 88.75145 * 15 14 12 42 42 H 1.08998 * 109.47157 * 331.52591 * 17 16 15 43 43 H 1.08998 * 109.47269 * 211.52664 * 17 16 15 44 44 H 0.97001 * 120.00590 * 359.97438 * 20 18 17 45 45 H 0.97002 * 119.99763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1936 -0.0048 5 6 4.2366 0.0364 -0.0052 6 6 3.5987 -1.1913 0.0001 7 6 2.1987 -1.2117 0.0053 8 6 1.4657 -2.4956 0.0104 9 8 0.2560 -2.5043 0.1292 10 7 2.1386 -3.6563 -0.1169 11 6 1.4122 -4.9285 -0.1124 12 6 2.4040 -6.0827 -0.2713 13 1 2.9592 -6.2911 0.6432 14 6 1.7879 -7.3346 -0.9114 15 6 3.1399 -7.4200 -1.6336 16 7 3.2620 -5.9600 -1.4646 17 6 4.6326 -5.5860 -1.0912 18 6 5.4295 -5.2909 -2.3358 19 8 4.9072 -5.3835 -3.4265 20 7 6.7229 -4.9251 -2.2368 21 6 7.4481 -4.6571 -3.3691 22 1 6.9827 -4.7387 -4.3403 23 6 8.7813 -4.2794 -3.2671 24 7 9.3457 -4.1740 -2.0851 25 14 9.7695 -3.9150 -4.8098 26 1 9.1352 -2.7953 -5.5509 27 1 11.1552 -3.5373 -4.4324 28 1 9.8039 -5.1232 -5.6726 29 1 -0.3633 -0.1132 1.0214 30 1 -0.3633 0.9411 -0.4127 31 1 -0.3633 -0.8280 -0.6088 32 1 3.9735 2.1532 -0.0087 33 1 5.3152 0.0909 -0.0096 34 1 4.1661 -2.1103 0.0003 35 1 3.1040 -3.6494 -0.2122 36 1 0.7017 -4.9442 -0.9389 37 1 0.8757 -5.0372 0.8301 38 1 0.9430 -7.1299 -1.5689 39 1 1.6038 -8.1493 -0.2112 40 1 3.0570 -7.7310 -2.6750 41 1 3.8922 -7.9852 -1.0835 42 1 5.0984 -6.4082 -0.5480 43 1 4.6075 -4.6998 -0.4572 44 1 7.1408 -4.8514 -1.3645 45 1 10.2766 -3.9107 -2.0139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323292767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:48 Heat of formation + Delta-G solvation = 8.944647 kcal Electronic energy + Delta-G solvation = -28449.912776 eV Core-core repulsion = 24468.877052 eV Total energy + Delta-G solvation = -3981.035724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93258 -40.34579 -38.84114 -37.83043 -34.87099 -33.98495 -32.97214 -32.55009 -31.45812 -30.74272 -28.81672 -27.42063 -25.91445 -24.68377 -23.84346 -23.19733 -22.08356 -20.82121 -19.80221 -19.37228 -18.00266 -17.97590 -16.93528 -16.35303 -16.20241 -15.90698 -15.60610 -15.37804 -15.13430 -14.74642 -14.54194 -14.29610 -14.08079 -13.82196 -13.55159 -13.44751 -13.22871 -12.77630 -12.51131 -12.48763 -12.41631 -12.06085 -11.97618 -11.66900 -11.60906 -11.38829 -11.11499 -10.95183 -10.58874 -10.49510 -10.27572 -10.05013 -10.00613 -9.56196 -9.49271 -9.25860 -8.95540 -8.89747 -8.30880 -8.03769 -6.48790 -3.89721 0.55057 1.07963 2.79753 3.01219 3.14941 3.21345 3.25616 3.71594 3.78732 3.85267 4.14483 4.18164 4.35182 4.54213 4.56055 4.65307 4.69479 4.88943 4.90027 4.95619 5.10428 5.22433 5.26700 5.32935 5.36367 5.46039 5.52861 5.58182 5.59655 5.69422 5.71859 5.80139 5.88773 5.89471 6.00301 6.08968 6.11378 6.16097 6.33519 6.47011 6.53399 7.07061 7.38489 7.48493 7.78623 7.98159 8.11222 8.53929 9.11350 9.45812 9.98078 10.68720 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.003955 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.895633 B = 7077.221440 C = 9770.451181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.186 3.814 3 N -0.493 5.493 4 C 0.127 3.873 5 C -0.183 4.183 6 C -0.034 4.034 7 C -0.192 4.192 8 C 0.565 3.435 9 O -0.534 6.534 10 N -0.715 5.715 11 C 0.142 3.858 12 C 0.002 3.998 13 H 0.083 0.917 14 C -0.132 4.132 15 C 0.005 3.995 16 N -0.433 5.433 17 C 0.007 3.993 18 C 0.443 3.557 19 O -0.571 6.571 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.391 0.609 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 1.499 10.048 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.048 3.952 3 N -0.203 5.203 4 C -0.030 4.030 5 C -0.203 4.203 6 C -0.060 4.060 7 C -0.197 4.197 8 C 0.352 3.648 9 O -0.413 6.413 10 N -0.367 5.367 11 C 0.018 3.982 12 C -0.108 4.108 13 H 0.101 0.899 14 C -0.171 4.171 15 C -0.123 4.123 16 N -0.156 5.156 17 C -0.125 4.125 18 C 0.228 3.772 19 O -0.454 6.454 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.177 4.177 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.224 0.776 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.028 2.718 8.890 16.005 hybrid contribution 2.646 -1.011 0.459 2.870 sum -10.382 1.707 9.349 14.075 Atomic orbital electron populations 1.21025 0.87600 1.03813 1.04018 1.21515 0.97570 0.86562 0.89570 1.67661 1.10017 1.28630 1.13945 1.23009 0.89382 0.98844 0.91801 1.22160 1.02271 0.92914 1.02927 1.21806 0.93084 0.99230 0.91902 1.20765 0.94388 0.95034 1.09548 1.17970 0.86958 0.83377 0.76522 1.90710 1.13396 1.87105 1.50087 1.45861 1.11378 1.05719 1.73761 1.21352 0.93983 0.80632 1.02218 1.23806 0.96370 0.95566 0.95101 0.89918 1.23158 0.98181 0.96231 0.99485 1.23738 0.96064 0.89884 1.02658 1.68875 1.07040 1.15633 1.24020 1.22569 0.91297 1.00977 0.97639 1.19592 0.82955 0.84841 0.89798 1.90547 1.70152 1.56596 1.28078 1.41861 1.08659 1.60013 1.09690 1.19638 0.92500 1.42853 0.87895 0.88022 1.25228 0.97040 0.97301 0.98172 1.69595 1.13943 1.48020 1.22810 0.85942 0.78246 0.79144 0.81070 1.19861 1.20931 1.19895 0.90054 0.91353 0.87982 0.82152 0.83724 0.84540 0.76338 0.90487 0.90995 0.88478 0.90364 0.89084 0.91351 0.91995 0.90544 0.77634 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.87 36.01 0.32 -1.01 16 2 C 0.19 2.57 6.82 -82.17 -0.56 2.01 16 3 N -0.49 -6.63 10.26 -9.14 -0.09 -6.72 16 4 C 0.13 1.43 11.17 -17.47 -0.20 1.24 16 5 C -0.18 -2.05 10.10 -39.49 -0.40 -2.45 16 6 C -0.03 -0.42 9.63 -38.87 -0.37 -0.79 16 7 C -0.19 -2.63 5.89 -104.82 -0.62 -3.25 16 8 C 0.56 8.04 7.70 -12.33 -0.09 7.94 16 9 O -0.53 -8.42 13.38 5.32 0.07 -8.34 16 10 N -0.72 -9.17 5.42 -61.25 -0.33 -9.51 16 11 C 0.14 1.64 5.82 -4.04 -0.02 1.61 16 12 C 0.00 0.02 3.25 -71.43 -0.23 -0.21 16 13 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 14 C -0.13 -1.29 8.00 -26.20 -0.21 -1.50 16 15 C 0.01 0.07 7.69 -7.55 -0.06 0.01 16 16 N -0.43 -6.45 5.39 -237.95 -1.28 -7.73 16 17 C 0.01 0.12 5.04 -4.98 -0.03 0.09 16 18 C 0.44 9.91 7.83 -10.98 -0.09 9.83 16 19 O -0.57 -15.15 16.01 5.55 0.09 -15.06 16 20 N -0.56 -13.54 5.29 -10.96 -0.06 -13.59 16 21 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 22 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -23.53 13.05 55.50 0.72 -22.81 16 25 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.38 5.86 -51.93 -0.30 1.07 16 32 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 1.52 6.57 -52.49 -0.34 1.17 16 35 H 0.40 5.00 4.35 -40.82 -0.18 4.83 16 36 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 0.81 7.44 -51.93 -0.39 0.42 16 42 H 0.06 0.88 7.35 -51.93 -0.38 0.49 16 43 H 0.08 1.04 6.25 -51.93 -0.32 0.72 16 44 H 0.39 8.85 7.90 -40.82 -0.32 8.53 16 45 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -33.07 374.38 -9.00 -42.07 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -5.94 Total: 14.70 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.80 Total: 5.85 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -1.04 Total: -60.36 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.16 Total: -23.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.07 -9.00 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323292767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.016 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds