Wall clock time and date at job start Tue Mar 31 2020 16:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31691 * 119.71613 * 2 1 4 4 C 1.31931 * 121.88098 * 180.24590 * 3 2 1 5 5 C 1.38356 * 121.07809 * 359.76362 * 4 3 2 6 6 C 1.38360 * 119.29947 * 359.97438 * 5 4 3 7 7 C 1.39525 * 119.71784 * 179.74865 * 2 1 3 8 8 C 1.47838 * 120.55779 * 0.02562 * 7 2 1 9 9 O 1.21557 * 119.99896 * 353.49327 * 8 7 2 10 10 N 1.34776 * 120.00150 * 173.48934 * 8 7 2 11 11 C 1.46500 * 120.00006 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46821 * 179.97438 * 11 10 8 13 13 H 1.08995 * 112.78870 * 75.80956 * 12 11 10 14 14 C 1.53514 * 113.47337 * 206.61543 * 12 11 10 15 15 C 1.53515 * 83.57332 * 140.79130 * 14 12 11 16 16 N 1.47476 * 87.93304 * 333.97617 * 15 14 12 17 17 C 1.46898 * 111.00216 * 138.70303 * 16 15 14 18 18 C 1.50703 * 109.47389 * 91.52912 * 17 16 15 19 19 O 1.21290 * 119.99569 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99913 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99802 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99759 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00133 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99823 * 359.72970 * 23 21 20 25 25 Si 1.86795 * 120.00242 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46982 * 60.00342 * 25 23 21 27 27 H 1.48501 * 109.47281 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47374 * 300.00274 * 25 23 21 29 29 H 1.08995 * 109.47151 * 263.67346 * 1 2 3 30 30 H 1.08995 * 109.47006 * 23.67813 * 1 2 3 31 31 H 1.09001 * 109.47050 * 143.67542 * 1 2 3 32 32 H 1.07995 * 119.46389 * 179.74956 * 4 3 2 33 33 H 1.07992 * 120.35240 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.84922 * 180.02562 * 6 5 4 35 35 H 0.97005 * 119.99787 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47535 * 60.00044 * 11 10 8 37 37 H 1.08994 * 109.47123 * 299.99317 * 11 10 8 38 38 H 1.09001 * 114.17177 * 27.15212 * 14 12 11 39 39 H 1.08997 * 114.17151 * 254.43725 * 14 12 11 40 40 H 1.08997 * 113.47751 * 219.21000 * 15 14 12 41 41 H 1.08999 * 113.52946 * 88.75145 * 15 14 12 42 42 H 1.08998 * 109.47157 * 331.52591 * 17 16 15 43 43 H 1.08998 * 109.47269 * 211.52664 * 17 16 15 44 44 H 0.97001 * 120.00590 * 359.97438 * 20 18 17 45 45 H 0.97002 * 119.99763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1936 -0.0048 5 6 4.2366 0.0364 -0.0052 6 6 3.5987 -1.1913 0.0001 7 6 2.1987 -1.2117 0.0053 8 6 1.4657 -2.4956 0.0104 9 8 0.2560 -2.5043 0.1292 10 7 2.1386 -3.6563 -0.1169 11 6 1.4122 -4.9285 -0.1124 12 6 2.4040 -6.0827 -0.2713 13 1 2.9592 -6.2911 0.6432 14 6 1.7879 -7.3346 -0.9114 15 6 3.1399 -7.4200 -1.6336 16 7 3.2620 -5.9600 -1.4646 17 6 4.6326 -5.5860 -1.0912 18 6 5.4295 -5.2909 -2.3358 19 8 4.9072 -5.3835 -3.4265 20 7 6.7229 -4.9251 -2.2368 21 6 7.4481 -4.6571 -3.3691 22 1 6.9827 -4.7387 -4.3403 23 6 8.7813 -4.2794 -3.2671 24 7 9.3457 -4.1740 -2.0851 25 14 9.7695 -3.9150 -4.8098 26 1 9.1352 -2.7953 -5.5509 27 1 11.1552 -3.5373 -4.4324 28 1 9.8039 -5.1232 -5.6726 29 1 -0.3633 -0.1132 1.0214 30 1 -0.3633 0.9411 -0.4127 31 1 -0.3633 -0.8280 -0.6088 32 1 3.9735 2.1532 -0.0087 33 1 5.3152 0.0909 -0.0096 34 1 4.1661 -2.1103 0.0003 35 1 3.1040 -3.6494 -0.2122 36 1 0.7017 -4.9442 -0.9389 37 1 0.8757 -5.0372 0.8301 38 1 0.9430 -7.1299 -1.5689 39 1 1.6038 -8.1493 -0.2112 40 1 3.0570 -7.7310 -2.6750 41 1 3.8922 -7.9852 -1.0835 42 1 5.0984 -6.4082 -0.5480 43 1 4.6075 -4.6998 -0.4572 44 1 7.1408 -4.8514 -1.3645 45 1 10.2766 -3.9107 -2.0139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323292767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:48 Heat of formation + Delta-G solvation = -16.555417 kcal Electronic energy + Delta-G solvation = -28451.018542 eV Core-core repulsion = 24468.877052 eV Total energy + Delta-G solvation = -3982.141490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93778 -41.38407 -39.95236 -39.51737 -35.99379 -35.84260 -33.92421 -33.52864 -33.30851 -32.03914 -29.79601 -28.37966 -27.53894 -25.64100 -25.36462 -24.15060 -23.03467 -21.86348 -21.08982 -20.71304 -19.90845 -18.97707 -17.95329 -17.67126 -17.27475 -17.12053 -16.70110 -16.56871 -16.35376 -16.26601 -15.81908 -15.61981 -15.27719 -15.18291 -14.76206 -14.45368 -14.25479 -14.14335 -13.89207 -13.52570 -13.45192 -13.34917 -13.07818 -12.96723 -12.91346 -12.62084 -12.44397 -12.33930 -12.14826 -11.95839 -11.59434 -11.48347 -11.06668 -10.99784 -10.49710 -10.37234 -10.25807 -9.99783 -9.91272 -9.72207 -8.46161 -5.94022 -0.41387 0.12726 1.38611 1.41748 1.51179 1.75819 2.00689 2.07366 2.28379 2.74681 2.79466 3.19561 3.25997 3.33934 3.53800 3.58535 3.61165 3.77479 3.82374 3.98657 4.06727 4.13274 4.26373 4.33377 4.40191 4.41375 4.50630 4.56076 4.64356 4.66059 4.74885 4.84392 4.88290 4.97892 5.01227 5.07178 5.13456 5.22612 5.32224 5.41690 5.47887 5.59840 5.92896 6.11054 6.35438 6.62007 6.83598 7.06117 7.14706 7.57670 8.14950 8.70543 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.003955 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.895633 B = 7077.221440 C = 9770.451181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.169 3.831 3 N -0.510 5.510 4 C 0.126 3.874 5 C -0.183 4.183 6 C -0.042 4.042 7 C -0.209 4.209 8 C 0.560 3.440 9 O -0.556 6.556 10 N -0.711 5.711 11 C 0.141 3.859 12 C 0.014 3.986 13 H 0.110 0.890 14 C -0.112 4.112 15 C -0.004 4.004 16 N -0.470 5.470 17 C 0.021 3.979 18 C 0.441 3.559 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.074 0.926 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.985 3.015 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.275 1.275 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 1.405 11.601 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.031 3.969 3 N -0.220 5.220 4 C -0.031 4.031 5 C -0.202 4.202 6 C -0.068 4.068 7 C -0.214 4.214 8 C 0.348 3.652 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.017 3.983 12 C -0.096 4.096 13 H 0.128 0.872 14 C -0.150 4.150 15 C -0.132 4.132 16 N -0.193 5.193 17 C -0.111 4.111 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.092 0.908 23 C -0.206 4.206 24 N -0.557 5.557 25 Si 0.809 3.191 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.200 1.200 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.211 0.789 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.349 2.607 10.474 16.401 hybrid contribution 2.429 -0.975 -0.044 2.618 sum -9.920 1.631 10.430 14.487 Atomic orbital electron populations 1.20941 0.87250 1.03598 1.04000 1.21724 0.98162 0.86945 0.90090 1.67700 1.11168 1.28477 1.14644 1.23596 0.88801 1.00393 0.90303 1.22464 1.03414 0.92420 1.01924 1.22022 0.92713 1.00304 0.91810 1.20812 0.95067 0.94796 1.10719 1.18131 0.86801 0.83950 0.76302 1.90693 1.14220 1.87450 1.51283 1.45876 1.11439 1.05850 1.73089 1.21457 0.94012 0.80337 1.02471 1.23869 0.95448 0.95506 0.94763 0.87186 1.23100 0.96183 0.96563 0.99195 1.23828 0.98626 0.89007 1.01783 1.68832 1.06622 1.17050 1.26796 1.22450 0.91331 1.03027 0.94308 1.20742 0.82508 0.82503 0.91416 1.90515 1.71040 1.58059 1.30796 1.41895 1.09351 1.60603 1.09129 1.19539 0.93604 1.45066 0.87984 0.90833 1.25879 0.97281 0.96567 1.00900 1.69640 1.14371 1.47777 1.23903 0.85113 0.77409 0.78679 0.77911 1.19965 1.19371 1.20012 0.89675 0.90512 0.89389 0.78918 0.81552 0.83603 0.76180 0.92091 0.89259 0.88883 0.86960 0.91844 0.89913 0.89479 0.88062 0.76926 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 8.87 71.24 0.63 -1.90 16 2 C 0.17 4.65 6.82 42.89 0.29 4.94 16 3 N -0.51 -13.29 10.26 -182.84 -1.88 -15.17 16 4 C 0.13 2.62 11.17 84.71 0.95 3.57 16 5 C -0.18 -3.79 10.10 22.33 0.23 -3.56 16 6 C -0.04 -1.00 9.63 22.73 0.22 -0.79 16 7 C -0.21 -5.67 5.89 -19.99 -0.12 -5.79 16 8 C 0.56 15.86 7.70 86.78 0.67 16.53 16 9 O -0.56 -17.64 13.38 -3.89 -0.05 -17.69 16 10 N -0.71 -17.48 5.42 -465.98 -2.52 -20.01 16 11 C 0.14 3.00 5.82 86.38 0.50 3.51 16 12 C 0.01 0.26 3.25 42.19 0.14 0.39 16 13 H 0.11 1.56 7.91 -2.39 -0.02 1.55 16 14 C -0.11 -1.89 8.00 30.94 0.25 -1.64 16 15 C 0.00 -0.09 7.69 83.58 0.64 0.55 16 16 N -0.47 -13.36 5.39 -906.75 -4.89 -18.25 16 17 C 0.02 0.62 5.04 85.56 0.43 1.05 16 18 C 0.44 19.83 7.83 87.66 0.69 20.51 16 19 O -0.62 -33.77 16.01 -3.06 -0.05 -33.82 16 20 N -0.57 -27.58 5.29 -306.99 -1.62 -29.20 16 21 C -0.33 -18.22 9.68 84.04 0.81 -17.40 16 22 H 0.07 4.38 7.16 -2.91 -0.02 4.36 16 23 C -0.01 -0.31 5.50 84.92 0.47 0.16 16 24 N -0.92 -46.98 13.05 21.66 0.28 -46.70 16 25 Si 0.98 41.76 29.55 68.60 2.03 43.79 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.46 5.86 -2.39 -0.01 2.44 16 32 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.15 3.06 6.57 -2.91 -0.02 3.05 16 35 H 0.40 9.47 4.35 -92.70 -0.40 9.07 16 36 H 0.06 1.51 7.87 -2.39 -0.02 1.49 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 42 H 0.09 2.20 7.35 -2.39 -0.02 2.19 16 43 H 0.10 2.52 6.25 -2.39 -0.01 2.50 16 44 H 0.40 17.82 7.90 -92.71 -0.73 17.09 16 45 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -73.50 374.38 -2.00 -75.50 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.09 Total: 41.42 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 6.79 Total: 20.13 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -10.63 Total: -129.32 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.10 Total: -51.51 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -73.50 -2.00 -75.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323292767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.941 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds