Wall clock time and date at job start Tue Mar 31 2020 16:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47323 * 270.00401 * 3 2 1 5 5 H 1.48501 * 109.46818 * 30.00500 * 3 2 1 6 6 H 1.48500 * 109.46759 * 150.00237 * 3 2 1 7 7 C 1.38816 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99452 * 197.35493 * 7 2 1 9 9 N 1.36930 * 120.00154 * 17.35845 * 7 2 1 10 10 C 1.46938 * 120.60307 * 207.65921 * 9 7 2 11 11 C 1.53192 * 108.77026 * 233.57630 * 10 9 7 12 12 C 1.53046 * 109.33981 * 305.41317 * 11 10 9 13 13 N 1.46489 * 109.45975 * 181.37195 * 12 11 10 14 14 S 1.65605 * 120.00264 * 145.00118 * 13 12 11 15 15 O 1.42096 * 104.27787 * 181.07146 * 14 13 12 16 16 O 1.42108 * 104.27219 * 308.92782 * 14 13 12 17 17 C 1.81395 * 104.44809 * 64.99627 * 14 13 12 18 18 C 1.53003 * 109.47091 * 180.02562 * 17 14 13 19 19 C 1.52999 * 109.47066 * 180.02562 * 18 17 14 20 20 H 1.09002 * 110.80632 * 305.70146 * 19 18 17 21 21 C 1.54813 * 110.90512 * 182.07805 * 19 18 17 22 22 C 1.54105 * 104.18240 * 220.92231 * 21 19 18 23 23 O 1.43740 * 107.29679 * 357.96902 * 22 21 19 24 24 C 1.44417 * 107.00142 * 26.48957 * 23 22 21 25 25 C 1.53037 * 109.53856 * 61.34839 * 12 11 10 26 26 C 1.46921 * 120.63396 * 27.68046 * 9 7 2 27 27 H 0.96998 * 119.99441 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.56067 * 113.80682 * 10 9 7 29 29 H 1.08997 * 109.61769 * 353.37961 * 10 9 7 30 30 H 1.09000 * 109.49508 * 185.44834 * 11 10 9 31 31 H 1.08999 * 109.49895 * 65.38212 * 11 10 9 32 32 H 1.09004 * 109.45761 * 301.33100 * 12 11 10 33 33 H 0.97003 * 120.00390 * 325.00411 * 13 12 11 34 34 H 1.09003 * 109.47485 * 300.00502 * 17 14 13 35 35 H 1.09003 * 109.46847 * 60.00754 * 17 14 13 36 36 H 1.08997 * 109.46965 * 300.00681 * 18 17 14 37 37 H 1.09003 * 109.46659 * 60.00639 * 18 17 14 38 38 H 1.09001 * 110.48583 * 339.59224 * 21 19 18 39 39 H 1.08993 * 110.49012 * 102.25072 * 21 19 18 40 40 H 1.09003 * 109.87582 * 117.39886 * 22 21 19 41 41 H 1.09003 * 109.87612 * 238.54406 * 22 21 19 42 42 H 1.08999 * 110.65397 * 201.48219 * 24 23 22 43 43 H 1.08993 * 110.60366 * 78.46825 * 24 23 22 44 44 H 1.09001 * 109.49590 * 58.58722 * 25 12 11 45 45 H 1.08997 * 109.50136 * 178.65250 * 25 12 11 46 46 H 1.09001 * 109.58442 * 6.60368 * 26 9 7 47 47 H 1.09003 * 109.70657 * 246.24738 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3548 10 6 1.8202 -3.6546 0.1788 11 6 2.0747 -4.6093 -0.9920 12 6 0.8190 -4.6887 -1.8633 13 7 1.0482 -5.6261 -2.9654 14 16 -0.1932 -6.5713 -3.5204 15 8 0.3953 -7.3533 -4.5506 16 8 -0.7208 -7.1796 -2.3495 17 6 -1.3831 -5.3925 -4.2168 18 6 -2.5908 -6.1528 -4.7685 19 6 -3.5942 -5.1586 -5.3565 20 1 -3.8614 -4.3983 -4.6224 21 6 -4.8550 -5.8896 -5.8785 22 6 -5.1842 -5.1752 -7.2037 23 8 -4.2256 -4.1168 -7.3682 24 6 -3.0365 -4.5084 -6.6482 25 6 0.5009 -3.3032 -2.4302 26 6 0.2279 -2.3339 -1.2758 27 1 -0.4849 0.8401 0.0004 28 1 1.0481 -4.0690 0.8270 29 1 2.7412 -3.5177 0.7454 30 1 2.3139 -5.6008 -0.6075 31 1 2.9086 -4.2393 -1.5885 32 1 -0.0201 -5.0357 -1.2603 33 1 1.9272 -5.6933 -3.3702 34 1 -1.7120 -4.7050 -3.4375 35 1 -0.9090 -4.8301 -5.0212 36 1 -2.2622 -6.8405 -5.5477 37 1 -3.0648 -6.7149 -3.9639 38 1 -4.6389 -6.9430 -6.0565 39 1 -5.6783 -5.7820 -5.1724 40 1 -5.1062 -5.8782 -8.0331 41 1 -6.1911 -4.7599 -7.1607 42 1 -2.4282 -3.6366 -6.4074 43 1 -2.4603 -5.2324 -7.2243 44 1 1.3495 -2.9450 -3.0130 45 1 -0.3795 -3.3651 -3.0698 46 1 0.0985 -1.3254 -1.6683 47 1 -0.6757 -2.6394 -0.7482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324928245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:51 Heat of formation + Delta-G solvation = -110.965134 kcal Electronic energy + Delta-G solvation = -27668.265879 eV Core-core repulsion = 23785.181676 eV Total energy + Delta-G solvation = -3883.084203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.78005 -38.13456 -37.05647 -35.97046 -35.16425 -34.68081 -31.94962 -31.25992 -30.12188 -29.18693 -28.79128 -24.91427 -24.64916 -22.65594 -22.20805 -21.97891 -20.82502 -19.71901 -19.09229 -17.63044 -17.03010 -16.98092 -16.39788 -16.12475 -15.92833 -15.58790 -15.10261 -14.76041 -14.42210 -13.97051 -13.76867 -13.60321 -13.40446 -13.16304 -13.04543 -12.95725 -12.89726 -12.30246 -12.12163 -12.02588 -11.96738 -11.90058 -11.71321 -11.43226 -11.17688 -11.09833 -11.07496 -10.91909 -10.79259 -10.72444 -10.47920 -10.28865 -10.24839 -9.97570 -9.87176 -9.67530 -9.08706 -8.52197 -6.77069 -5.86159 -3.28116 0.23789 2.73371 3.33920 3.41467 3.42270 3.57446 3.72259 4.03722 4.13835 4.34124 4.44094 4.49565 4.55435 4.68649 4.79548 4.94190 5.03140 5.06365 5.21612 5.28625 5.32632 5.39181 5.40184 5.44293 5.47650 5.50153 5.52459 5.62462 5.65642 5.69257 5.86127 5.97862 6.16086 6.34001 6.40642 6.49759 6.55341 6.62746 6.73116 6.87897 7.07562 7.25890 7.53889 7.73745 8.37470 9.13903 9.76897 10.32770 11.22653 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.003351 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.929740 B = 8354.607656 C =10135.826469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.133 4.133 12 C 0.150 3.850 13 N -1.113 6.113 14 S 2.610 3.390 15 O -0.968 6.968 16 O -0.957 6.957 17 C -0.637 4.637 18 C -0.100 4.100 19 C -0.115 4.115 20 H 0.095 0.905 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.378 6.378 24 C 0.047 3.953 25 C -0.162 4.162 26 C 0.170 3.830 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 -12.410 -11.902 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.174 4.174 12 C 0.044 3.956 13 N -0.872 5.872 14 S 2.702 3.298 15 O -0.958 6.958 16 O -0.947 6.947 17 C -0.766 4.766 18 C -0.139 4.139 19 C -0.134 4.134 20 H 0.113 0.887 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.297 6.297 24 C -0.030 4.030 25 C -0.203 4.203 26 C 0.044 3.956 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.875 -13.005 -11.853 18.892 hybrid contribution 0.608 1.414 -0.237 1.557 sum -6.267 -11.592 -12.090 17.883 Atomic orbital electron populations 1.70023 1.05252 1.25601 1.53810 1.25040 0.95298 0.98456 1.00793 0.86281 0.79142 0.83598 0.77690 1.21454 1.21753 1.20423 1.19202 0.92794 0.84802 1.41521 0.91533 1.44080 1.35749 1.01502 1.50111 1.20918 0.98166 0.86611 0.92544 1.22284 0.96490 0.99925 0.98714 1.20950 0.99829 0.88435 0.86345 1.55700 1.25380 1.58607 1.47505 1.04894 0.75206 0.75131 0.74531 1.93578 1.75212 1.67120 1.59929 1.93606 1.80536 1.73523 1.47010 1.30829 1.14149 1.17866 1.13709 1.21278 0.93670 0.97508 1.01444 1.22713 0.94426 0.97960 0.98330 0.88652 1.23049 0.98281 1.00503 0.97533 1.23159 0.93720 0.89871 0.96352 1.88895 1.24853 1.42079 1.73883 1.23728 0.88401 1.00199 0.90658 1.22877 1.00747 0.95829 1.00864 1.20782 0.88869 0.98337 0.87644 0.93568 0.95984 0.92230 0.92223 0.91655 0.89641 0.75176 0.84030 0.84691 0.90172 0.89707 0.90273 0.90027 0.92396 0.89843 0.88500 0.91834 0.91636 0.93084 0.88990 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 11.19 55.49 0.62 -24.51 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.90 3.00 -172.32 -0.52 -14.42 16 10 C 0.14 2.84 6.52 -3.70 -0.02 2.82 16 11 C -0.13 -2.13 5.61 -26.61 -0.15 -2.28 16 12 C 0.15 2.27 2.65 -67.89 -0.18 2.09 16 13 N -1.11 -13.79 5.36 -4.86 -0.03 -13.82 16 14 S 2.61 31.84 5.44 -107.50 -0.58 31.25 16 15 O -0.97 -13.93 18.08 -57.54 -1.04 -14.97 16 16 O -0.96 -14.91 17.39 -57.54 -1.00 -15.91 16 17 C -0.64 -5.88 5.06 37.16 0.19 -5.69 16 18 C -0.10 -0.84 4.62 -26.73 -0.12 -0.96 16 19 C -0.11 -0.96 3.12 -88.61 -0.28 -1.24 16 20 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.16 -1.12 6.60 -25.20 -0.17 -1.28 16 22 C 0.05 0.37 7.70 37.73 0.29 0.66 16 23 O -0.38 -4.18 11.52 -35.23 -0.41 -4.58 16 24 C 0.05 0.43 6.49 38.21 0.25 0.68 16 25 C -0.16 -2.66 5.65 -26.61 -0.15 -2.81 16 26 C 0.17 3.71 5.31 -3.71 -0.02 3.69 16 27 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.34 7.48 -51.93 -0.39 0.95 16 33 H 0.41 4.51 8.80 -34.47 -0.30 4.21 16 34 H 0.14 1.28 6.79 -51.92 -0.35 0.93 16 35 H 0.13 1.03 7.58 -51.92 -0.39 0.63 16 36 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 43 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.69 5.75 -51.93 -0.30 0.39 16 46 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -33.25 376.68 -10.80 -44.04 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.90 Total: 2.38 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.59 Total: -11.12 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.08 Total: -52.75 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -2.45 Total: -35.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 31.84 SS G_CDS: -0.58 Total: 31.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.25 -10.80 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324928245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.922 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds