Wall clock time and date at job start Tue Mar 31 2020 16:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99562 * 2 1 4 4 H 1.48502 * 109.47302 * 240.00409 * 3 2 1 5 5 H 1.48502 * 109.47547 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47150 * 120.00486 * 3 2 1 7 7 C 1.38811 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 189.09531 * 7 2 1 9 9 N 1.36937 * 119.99710 * 9.08459 * 7 2 1 10 10 C 1.48151 * 127.83807 * 15.60759 * 9 7 2 11 11 C 1.54387 * 104.61652 * 140.38644 * 10 9 7 12 12 H 1.09000 * 118.18146 * 244.19857 * 11 10 9 13 13 C 1.53003 * 118.11975 * 87.19135 * 11 10 9 14 14 H 1.08994 * 117.44281 * 16.06624 * 13 11 10 15 15 C 1.53004 * 117.43995 * 160.80824 * 13 11 10 16 16 N 1.46497 * 109.46811 * 185.00206 * 15 13 11 17 17 C 1.34779 * 120.00004 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00395 * 179.72074 * 17 16 15 20 20 C 1.52995 * 109.47151 * 180.27081 * 19 17 16 21 21 N 1.46501 * 109.46778 * 180.02562 * 20 19 17 22 22 C 1.34742 * 120.04490 * 90.00219 * 21 20 19 23 23 N 1.30635 * 121.49478 * 179.97438 * 22 21 20 24 24 C 1.33522 * 121.50923 * 0.02562 * 23 22 21 25 25 C 1.36208 * 119.90405 * 359.97438 * 24 23 22 26 26 C 1.35030 * 120.03872 * 269.72401 * 21 20 19 27 27 O 1.21976 * 120.70719 * 0.02562 * 26 21 20 28 28 C 1.52997 * 60.55694 * 268.45424 * 13 11 10 29 29 H 1.08998 * 119.54373 * 248.23692 * 28 13 11 30 30 C 1.48147 * 127.83971 * 195.57297 * 9 7 2 31 31 H 0.97006 * 120.00325 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.40805 * 21.60290 * 10 9 7 33 33 H 1.08998 * 110.40457 * 259.16893 * 10 9 7 34 34 H 1.08994 * 109.47229 * 64.99795 * 15 13 11 35 35 H 1.09000 * 109.47124 * 304.99897 * 15 13 11 36 36 H 0.96993 * 120.00313 * 359.97438 * 16 15 13 37 37 H 1.08995 * 109.46976 * 300.27452 * 19 17 16 38 38 H 1.09007 * 109.46685 * 60.27092 * 19 17 16 39 39 H 1.09004 * 109.47343 * 299.99831 * 20 19 17 40 40 H 1.08999 * 109.47479 * 60.00073 * 20 19 17 41 41 H 1.07998 * 119.25417 * 0.02562 * 22 21 20 42 42 H 1.07991 * 120.05348 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.70304 * 180.02562 * 25 24 23 44 44 H 1.08993 * 110.40704 * 100.82440 * 30 9 7 45 45 H 1.09005 * 110.50294 * 338.44609 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1037 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2079 0.1473 9 7 1.3386 -2.3805 -0.1883 10 6 -0.0340 -2.5706 -0.7125 11 6 0.0643 -3.8160 -1.6196 12 1 -0.1225 -3.6920 -2.6862 13 6 -0.1178 -5.1925 -0.9768 14 1 -0.5672 -5.2280 0.0155 15 6 -0.4666 -6.3614 -1.9005 16 7 -0.7169 -7.5606 -1.0971 17 6 -1.0432 -8.7204 -1.7012 18 8 -1.1301 -8.7711 -2.9099 19 6 -1.2945 -9.9556 -0.8753 20 6 -1.6373 -11.1259 -1.7993 21 7 -1.8822 -12.3265 -0.9963 22 6 -3.1259 -12.6026 -0.5576 23 7 -3.3764 -13.6652 0.1598 24 6 -2.4115 -14.5264 0.4917 25 6 -1.1323 -14.3049 0.0795 26 6 -0.8628 -13.1608 -0.6996 27 8 0.2679 -12.9273 -1.0932 28 6 1.2866 -4.5967 -1.0932 29 1 2.0102 -5.0541 -1.7678 30 6 1.8197 -3.7546 0.0859 31 1 -0.4851 0.8401 0.0004 32 1 -0.3431 -1.7012 -1.2928 33 1 -0.7317 -2.7503 0.1055 34 1 0.3641 -6.5468 -2.5812 35 1 -1.3596 -6.1162 -2.4753 36 1 -0.6470 -7.5202 -0.1306 37 1 -0.4003 -10.1964 -0.3004 38 1 -2.1263 -9.7744 -0.1945 39 1 -2.5316 -10.8851 -2.3742 40 1 -0.8056 -11.3071 -2.4801 41 1 -3.9342 -11.9305 -0.8053 42 1 -2.6448 -15.3973 1.0861 43 1 -0.3420 -14.9933 0.3402 44 1 1.4116 -4.1191 1.0285 45 1 2.9092 -3.7801 0.1092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330349109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:24 Heat of formation + Delta-G solvation = 9.430209 kcal Electronic energy + Delta-G solvation = -26826.640860 eV Core-core repulsion = 22845.626191 eV Total energy + Delta-G solvation = -3981.014669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82737 -40.96751 -40.20304 -38.70694 -36.83650 -36.29079 -34.99863 -32.91951 -32.27991 -31.98777 -29.06354 -28.83042 -27.14965 -26.03999 -25.29530 -23.77857 -22.81060 -21.90752 -21.01944 -20.81873 -19.34950 -18.89361 -18.78203 -18.19362 -17.53657 -17.18881 -16.90162 -16.80122 -16.57796 -15.93251 -15.49253 -15.46572 -15.42391 -14.93509 -14.79695 -14.60432 -14.35371 -14.09963 -14.01339 -13.87557 -13.63302 -13.35090 -13.18472 -12.89654 -12.69456 -12.36365 -12.33827 -11.98894 -11.96663 -11.77110 -11.59373 -11.29523 -11.16777 -11.02421 -10.89344 -10.69752 -10.54683 -10.05330 -9.59515 -8.91237 -7.92645 -5.28716 -0.32124 0.80549 1.32286 1.45742 1.48773 1.55289 1.57732 2.14458 2.47033 2.62014 2.74053 3.23950 3.25339 3.52495 3.57198 3.62005 3.69064 3.71180 3.83558 3.88458 3.97442 4.21233 4.27615 4.28636 4.37711 4.42299 4.53452 4.56298 4.64086 4.70072 4.74756 4.77067 4.88301 4.93363 5.01440 5.20933 5.33495 5.40010 5.43634 5.45754 5.53198 5.56149 5.66274 6.17701 6.50542 6.71840 6.81357 7.00735 7.18731 7.67745 8.45873 9.20809 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.001643 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.996295 B =17042.700437 C =17131.889141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.176 4.176 12 H 0.113 0.887 13 C -0.106 4.106 14 H 0.112 0.888 15 C 0.163 3.837 16 N -0.714 5.714 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.144 4.144 20 C 0.105 3.895 21 N -0.515 5.515 22 C 0.386 3.614 23 N -0.559 5.559 24 C 0.170 3.830 25 C -0.315 4.315 26 C 0.499 3.501 27 O -0.589 6.589 28 C -0.165 4.165 29 H 0.120 0.880 30 C 0.148 3.852 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.004 0.996 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.417 0.583 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.029 0.971 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -28.374 0.817 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.196 4.196 12 H 0.131 0.869 13 C -0.125 4.125 14 H 0.130 0.870 15 C 0.039 3.961 16 N -0.366 5.366 17 C 0.307 3.693 18 O -0.462 6.462 19 C -0.185 4.185 20 C -0.017 4.017 21 N -0.230 5.230 22 C 0.103 3.897 23 N -0.281 5.281 24 C 0.030 3.970 25 C -0.339 4.339 26 C 0.301 3.699 27 O -0.472 6.472 28 C -0.185 4.185 29 H 0.138 0.862 30 C 0.023 3.977 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.098 0.902 41 H 0.267 0.733 42 H 0.213 0.787 43 H 0.174 0.826 44 H 0.046 0.954 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.149 -28.253 0.075 30.020 hybrid contribution 1.581 1.388 0.161 2.110 sum -8.568 -26.865 0.236 28.199 Atomic orbital electron populations 1.70074 1.06437 1.25832 1.57021 1.25721 0.96523 1.01223 1.02063 0.85151 0.77246 0.78623 0.78287 1.20452 1.21848 1.20057 1.19333 0.91306 0.83779 1.42812 0.90358 1.45522 1.13970 1.01155 1.73897 1.20805 0.85929 0.93734 0.93183 1.23928 1.04431 0.91393 0.99844 0.86915 1.22430 0.97625 0.92033 1.00416 0.86991 1.20668 1.01081 0.82115 0.92248 1.45904 1.70010 1.09017 1.11642 1.20682 0.75659 0.84868 0.88099 1.90736 1.53441 1.85848 1.16132 1.21888 1.06443 0.90961 0.99185 1.21780 1.06085 0.81064 0.92765 1.46905 1.10156 1.22629 1.43350 1.26098 0.86118 0.92964 0.84471 1.68537 1.34782 1.05534 1.19216 1.23126 0.87218 0.96106 0.90511 1.22990 1.01164 1.01091 1.08665 1.17825 0.84557 0.85150 0.82353 1.90956 1.22387 1.76552 1.57271 1.23920 0.90731 1.02518 1.01309 0.86183 1.21284 0.97578 0.84374 0.94430 0.94070 0.92933 0.97773 0.91872 0.90766 0.74641 0.88424 0.84177 0.84698 0.90240 0.73271 0.78708 0.82573 0.95356 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 10.86 21.65 0.24 -56.10 16 2 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 3 Si 0.98 45.28 29.56 68.60 2.03 47.31 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.65 10.35 84.03 0.87 -12.78 16 8 H 0.08 4.21 7.84 -2.91 -0.02 4.18 16 9 N -0.62 -31.79 3.38 -688.15 -2.33 -34.12 16 10 C 0.19 9.06 5.70 86.53 0.49 9.55 16 11 C -0.18 -6.26 6.85 -9.89 -0.07 -6.33 16 12 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 13 C -0.11 -2.81 5.39 -10.79 -0.06 -2.86 16 14 H 0.11 2.84 8.04 -2.39 -0.02 2.82 16 15 C 0.16 3.61 5.95 86.38 0.51 4.12 16 16 N -0.71 -12.05 5.56 -463.05 -2.57 -14.63 16 17 C 0.52 9.29 7.83 87.66 0.69 9.97 16 18 O -0.58 -15.15 15.98 -3.05 -0.05 -15.20 16 19 C -0.14 -1.48 6.02 29.85 0.18 -1.30 16 20 C 0.11 1.23 4.67 86.38 0.40 1.63 16 21 N -0.52 -5.91 2.57 -655.04 -1.68 -7.60 16 22 C 0.39 2.08 11.48 180.32 2.07 4.15 16 23 N -0.56 -4.93 10.39 -199.74 -2.08 -7.01 16 24 C 0.17 1.50 11.20 83.96 0.94 2.44 16 25 C -0.31 -4.42 10.07 22.48 0.23 -4.19 16 26 C 0.50 9.71 7.45 84.88 0.63 10.34 16 27 O -0.59 -17.14 16.78 -5.24 -0.09 -17.23 16 28 C -0.17 -5.35 6.74 -9.89 -0.07 -5.42 16 29 H 0.12 3.53 8.12 -2.39 -0.02 3.51 16 30 C 0.15 5.96 7.04 86.54 0.61 6.57 16 31 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 32 H 0.05 2.89 6.51 -2.39 -0.02 2.87 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 1.54 7.94 -2.39 -0.02 1.52 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 4.94 8.40 -92.71 -0.78 4.16 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.14 0.83 7.97 -2.38 -0.02 0.82 16 40 H 0.08 1.53 7.41 -2.39 -0.02 1.52 16 41 H 0.25 -1.17 8.03 -2.91 -0.02 -1.20 16 42 H 0.20 0.45 8.06 -2.92 -0.02 0.43 16 43 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -82.74 380.23 1.59 -81.15 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.23 Total: 10.55 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.89 Total: 12.88 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -8.42 Total: -119.45 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.14 Total: -32.43 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -82.74 1.59 -81.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330349109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.578 kcal (2) G-P(sol) polarization free energy of solvation -82.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds