Wall clock time and date at job start Tue Mar 31 2020 17:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38281 * 120.37629 * 2 1 4 4 N 1.31861 * 120.92800 * 179.97438 * 3 2 1 5 5 C 1.31809 * 121.80274 * 0.02562 * 4 3 2 6 6 C 1.38903 * 120.65692 * 359.97438 * 5 4 3 7 7 N 1.39753 * 120.49734 * 179.97438 * 6 5 4 8 8 C 1.34769 * 120.00507 * 212.22159 * 7 6 5 9 9 O 1.21378 * 119.99846 * 4.96256 * 8 7 6 10 10 C 1.49352 * 120.00191 * 184.96782 * 8 7 6 11 11 O 1.21351 * 120.00242 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99751 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 8 14 14 C 1.53041 * 109.45998 * 275.02912 * 13 12 10 15 15 C 1.53190 * 109.31361 * 178.60007 * 14 13 12 16 16 N 1.46927 * 108.76545 * 54.65306 * 15 14 13 17 17 C 1.36933 * 120.63056 * 126.40867 * 16 15 14 18 18 H 1.07996 * 120.00084 * 332.93800 * 17 16 15 19 19 C 1.38813 * 119.99877 * 152.94140 * 17 16 15 20 20 N 1.31617 * 120.00283 * 343.44279 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 163.44510 * 19 17 16 22 22 H 1.48505 * 109.47401 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47484 * 119.99664 * 21 19 17 24 24 H 1.48501 * 109.47118 * 239.99912 * 21 19 17 25 25 C 1.46928 * 118.73760 * 306.38537 * 16 15 14 26 26 C 1.53036 * 109.46040 * 154.97000 * 13 12 10 27 27 C 1.38491 * 120.37681 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47067 * 89.99529 * 1 2 3 29 29 H 1.08998 * 109.46842 * 209.99279 * 1 2 3 30 30 H 1.08993 * 109.46942 * 329.99501 * 1 2 3 31 31 H 1.07995 * 119.53966 * 359.96244 * 3 2 1 32 32 H 1.08001 * 119.67148 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99302 * 32.21875 * 7 6 5 34 34 H 0.96998 * 120.00422 * 359.97438 * 12 10 8 35 35 H 1.09002 * 109.46048 * 34.99603 * 13 12 10 36 36 H 1.08999 * 109.49421 * 298.55970 * 14 13 12 37 37 H 1.08997 * 109.49694 * 58.65855 * 14 13 12 38 38 H 1.09000 * 109.59977 * 294.86523 * 15 14 13 39 39 H 1.08993 * 109.70584 * 174.50277 * 15 14 13 40 40 H 0.97001 * 120.00006 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58612 * 293.82218 * 25 16 15 42 42 H 1.09004 * 109.70238 * 173.46419 * 25 16 15 43 43 H 1.08995 * 109.50361 * 301.33793 * 26 13 12 44 44 H 1.09002 * 109.49532 * 61.40594 * 26 13 12 45 45 H 1.07994 * 120.82526 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2063 1.1930 0.0000 4 7 3.5249 1.2057 0.0005 5 6 4.2303 0.0922 0.0005 6 6 3.5999 -1.1455 0.0005 7 7 4.3511 -2.3240 0.0000 8 6 3.8805 -3.4229 -0.6223 9 8 2.8483 -3.3650 -1.2582 10 6 4.6290 -4.7120 -0.5293 11 8 5.6612 -4.7698 0.1062 12 7 4.1581 -5.8110 -1.1512 13 6 4.8920 -7.0757 -1.0596 14 6 5.9808 -7.1123 -2.1344 15 6 6.7686 -8.4205 -2.0132 16 7 5.8266 -9.5466 -2.0702 17 6 6.0054 -10.5607 -2.9728 18 1 6.5254 -10.3726 -3.9004 19 6 5.5183 -11.8306 -2.6953 20 7 5.1829 -12.1524 -1.4639 21 14 5.3389 -13.0830 -4.0697 22 1 5.7804 -12.4777 -5.3518 23 1 6.1765 -14.2718 -3.7687 24 1 3.9165 -13.4950 -4.1813 25 6 4.6893 -9.5640 -1.1402 26 6 3.9250 -8.2428 -1.2710 27 6 2.2074 -1.1948 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 1.6650 2.1274 -0.0006 32 1 5.3091 0.1428 0.0014 33 1 5.2113 -2.3510 0.4476 34 1 3.3328 -5.7649 -1.6589 35 1 5.3513 -7.1584 -0.0745 36 1 5.5204 -7.0548 -3.1207 37 1 6.6557 -6.2674 -1.9975 38 1 7.3029 -8.4389 -1.0633 39 1 7.4809 -8.4981 -2.8345 40 1 4.8422 -13.0396 -1.2702 41 1 5.0540 -9.6756 -0.1191 42 1 4.0274 -10.3948 -1.3846 43 1 3.1365 -8.2028 -0.5195 44 1 3.4838 -8.1742 -2.2653 45 1 1.6872 -2.1412 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331272055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:04 Heat of formation + Delta-G solvation = -11.381855 kcal Electronic energy + Delta-G solvation = -27674.367780 eV Core-core repulsion = 23692.450632 eV Total energy + Delta-G solvation = -3981.917148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50438 -40.28959 -38.92296 -37.44677 -35.86611 -34.54228 -33.98110 -32.22849 -30.85360 -30.27325 -29.54645 -27.76027 -26.16084 -24.82063 -23.68857 -22.47871 -22.27069 -21.58969 -20.47673 -19.72434 -18.70416 -17.57277 -17.37946 -16.98752 -16.71500 -16.33249 -15.84128 -15.54218 -14.88612 -14.66648 -14.30824 -14.18138 -13.92718 -13.78755 -13.61089 -13.50652 -13.16606 -13.06155 -12.98206 -12.74202 -12.49219 -12.32247 -11.89657 -11.56796 -11.39717 -11.18646 -10.95135 -10.78398 -10.57909 -10.38627 -10.17654 -10.10249 -9.89781 -9.80981 -9.67888 -9.49002 -9.00218 -8.74444 -8.52674 -6.76875 -5.84810 -3.26920 0.48858 0.84836 1.31939 2.02310 2.96259 3.32448 3.35259 3.42011 3.42301 3.44237 4.09444 4.22764 4.40127 4.44949 4.45072 4.63271 4.64907 5.03843 5.19808 5.20271 5.23665 5.31515 5.38851 5.45089 5.47563 5.64052 5.71595 5.73350 5.86655 5.95324 6.03984 6.18988 6.29064 6.38727 6.41860 6.46537 6.55565 6.67669 6.72432 6.88929 7.17450 7.24351 7.43609 7.55886 7.57894 7.74593 7.86497 8.38231 9.14864 9.77803 10.33410 11.24015 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.002040 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.716228 B =13719.724473 C =14175.374847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 C 0.080 3.920 4 N -0.461 5.461 5 C 0.074 3.926 6 C 0.101 3.899 7 N -0.643 5.643 8 C 0.510 3.490 9 O -0.499 6.499 10 C 0.506 3.494 11 O -0.518 6.518 12 N -0.686 5.686 13 C 0.148 3.852 14 C -0.141 4.141 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.173 3.827 26 C -0.148 4.148 27 C -0.082 4.082 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.427 0.573 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.022 0.978 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 23.594 4.399 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.118 4.118 3 C -0.078 4.078 4 N -0.168 5.168 5 C -0.086 4.086 6 C 0.004 3.996 7 N -0.291 5.291 8 C 0.292 3.708 9 O -0.373 6.373 10 C 0.285 3.715 11 O -0.394 6.394 12 N -0.337 5.337 13 C 0.045 3.955 14 C -0.181 4.181 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.046 3.954 26 C -0.188 4.188 27 C -0.109 4.109 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.266 0.734 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.047 24.119 4.442 25.517 hybrid contribution -0.495 -1.480 -0.685 1.704 sum -7.542 22.639 3.757 24.156 Atomic orbital electron populations 1.20747 0.89726 1.03314 1.03010 1.20881 0.97902 0.93268 0.99768 1.22672 0.89797 0.97634 0.97719 1.67666 1.08359 1.29753 1.11053 1.22620 1.00560 0.85944 0.99448 1.18829 0.91882 0.86817 1.02059 1.43110 1.23594 1.08702 1.53650 1.20673 0.85714 0.85378 0.79028 1.90777 1.23333 1.84755 1.38396 1.19685 0.85693 0.84703 0.81433 1.90791 1.23073 1.84725 1.40860 1.46248 1.27620 1.09474 1.50335 1.21308 0.93132 0.80375 1.00659 1.22412 0.97568 0.99829 0.98274 1.20867 0.91713 0.86337 0.99003 1.44124 1.24578 1.21825 1.41046 1.19246 1.34732 0.87668 0.96413 0.91465 1.25044 1.02006 0.96768 0.95969 1.70014 1.47843 1.20032 1.16984 0.86206 0.77493 0.81292 0.81677 1.20258 1.21705 1.21543 1.20800 0.89480 0.92662 0.92436 1.22584 0.97866 0.96992 1.01332 1.21566 0.92182 0.99652 0.97541 0.90494 0.91085 0.90899 0.82505 0.82239 0.73449 0.75532 0.89394 0.91957 0.92569 0.96034 0.92320 0.93592 0.96003 0.88486 0.92447 0.91832 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.04 36.01 0.36 -0.25 16 2 C -0.12 -0.95 5.89 -104.51 -0.62 -1.57 16 3 C 0.08 0.66 10.85 -17.52 -0.19 0.47 16 4 N -0.46 -4.58 10.35 -13.07 -0.14 -4.71 16 5 C 0.07 0.67 11.12 -17.32 -0.19 0.48 16 6 C 0.10 0.99 6.32 -83.59 -0.53 0.46 16 7 N -0.64 -6.22 5.34 -10.20 -0.05 -6.28 16 8 C 0.51 6.05 7.66 -11.63 -0.09 5.96 16 9 O -0.50 -6.63 14.12 5.47 0.08 -6.55 16 10 C 0.51 6.82 7.85 -11.63 -0.09 6.73 16 11 O -0.52 -8.01 16.14 5.50 0.09 -7.93 16 12 N -0.69 -9.35 5.07 -54.23 -0.27 -9.63 16 13 C 0.15 2.40 2.42 -67.89 -0.16 2.24 16 14 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 15 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 16 N -0.59 -14.31 3.00 -172.32 -0.52 -14.82 16 17 C -0.25 -6.69 9.60 -15.06 -0.14 -6.83 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 20 N -0.90 -25.51 11.08 55.49 0.62 -24.90 16 21 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 26 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 27 C -0.08 -0.81 8.45 -39.08 -0.33 -1.14 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.43 3.39 8.30 -40.82 -0.34 3.05 16 34 H 0.41 5.02 8.07 -40.82 -0.33 4.69 16 35 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 2.46 5.96 -51.93 -0.31 2.15 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.15 1.54 6.43 -52.49 -0.34 1.20 16 LS Contribution 373.93 15.07 5.63 5.63 Total: -1.00 -31.21 373.93 -8.32 -39.53 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.31 Total: 5.40 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.41 Total: 8.06 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.37 Total: -60.34 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.17 Total: -14.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.21 -8.32 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331272055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.148 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds