Wall clock time and date at job start Tue Mar 31 2020 17:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38281 * 120.37629 * 2 1 4 4 N 1.31861 * 120.92800 * 179.97438 * 3 2 1 5 5 C 1.31809 * 121.80274 * 0.02562 * 4 3 2 6 6 C 1.38903 * 120.65692 * 359.97438 * 5 4 3 7 7 N 1.39753 * 120.49734 * 179.97438 * 6 5 4 8 8 C 1.34769 * 120.00507 * 212.22159 * 7 6 5 9 9 O 1.21378 * 119.99846 * 4.96256 * 8 7 6 10 10 C 1.49352 * 120.00191 * 184.96782 * 8 7 6 11 11 O 1.21351 * 120.00242 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99751 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 8 14 14 C 1.53041 * 109.45998 * 275.02912 * 13 12 10 15 15 C 1.53190 * 109.31361 * 178.60007 * 14 13 12 16 16 N 1.46927 * 108.76545 * 54.65306 * 15 14 13 17 17 C 1.36933 * 120.63056 * 126.40867 * 16 15 14 18 18 H 1.07996 * 120.00084 * 332.93800 * 17 16 15 19 19 C 1.38813 * 119.99877 * 152.94140 * 17 16 15 20 20 N 1.31617 * 120.00283 * 343.44279 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 163.44510 * 19 17 16 22 22 H 1.48505 * 109.47401 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47484 * 119.99664 * 21 19 17 24 24 H 1.48501 * 109.47118 * 239.99912 * 21 19 17 25 25 C 1.46928 * 118.73760 * 306.38537 * 16 15 14 26 26 C 1.53036 * 109.46040 * 154.97000 * 13 12 10 27 27 C 1.38491 * 120.37681 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47067 * 89.99529 * 1 2 3 29 29 H 1.08998 * 109.46842 * 209.99279 * 1 2 3 30 30 H 1.08993 * 109.46942 * 329.99501 * 1 2 3 31 31 H 1.07995 * 119.53966 * 359.96244 * 3 2 1 32 32 H 1.08001 * 119.67148 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99302 * 32.21875 * 7 6 5 34 34 H 0.96998 * 120.00422 * 359.97438 * 12 10 8 35 35 H 1.09002 * 109.46048 * 34.99603 * 13 12 10 36 36 H 1.08999 * 109.49421 * 298.55970 * 14 13 12 37 37 H 1.08997 * 109.49694 * 58.65855 * 14 13 12 38 38 H 1.09000 * 109.59977 * 294.86523 * 15 14 13 39 39 H 1.08993 * 109.70584 * 174.50277 * 15 14 13 40 40 H 0.97001 * 120.00006 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58612 * 293.82218 * 25 16 15 42 42 H 1.09004 * 109.70238 * 173.46419 * 25 16 15 43 43 H 1.08995 * 109.50361 * 301.33793 * 26 13 12 44 44 H 1.09002 * 109.49532 * 61.40594 * 26 13 12 45 45 H 1.07994 * 120.82526 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2063 1.1930 0.0000 4 7 3.5249 1.2057 0.0005 5 6 4.2303 0.0922 0.0005 6 6 3.5999 -1.1455 0.0005 7 7 4.3511 -2.3240 0.0000 8 6 3.8805 -3.4229 -0.6223 9 8 2.8483 -3.3650 -1.2582 10 6 4.6290 -4.7120 -0.5293 11 8 5.6612 -4.7698 0.1062 12 7 4.1581 -5.8110 -1.1512 13 6 4.8920 -7.0757 -1.0596 14 6 5.9808 -7.1123 -2.1344 15 6 6.7686 -8.4205 -2.0132 16 7 5.8266 -9.5466 -2.0702 17 6 6.0054 -10.5607 -2.9728 18 1 6.5254 -10.3726 -3.9004 19 6 5.5183 -11.8306 -2.6953 20 7 5.1829 -12.1524 -1.4639 21 14 5.3389 -13.0830 -4.0697 22 1 5.7804 -12.4777 -5.3518 23 1 6.1765 -14.2718 -3.7687 24 1 3.9165 -13.4950 -4.1813 25 6 4.6893 -9.5640 -1.1402 26 6 3.9250 -8.2428 -1.2710 27 6 2.2074 -1.1948 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 1.6650 2.1274 -0.0006 32 1 5.3091 0.1428 0.0014 33 1 5.2113 -2.3510 0.4476 34 1 3.3328 -5.7649 -1.6589 35 1 5.3513 -7.1584 -0.0745 36 1 5.5204 -7.0548 -3.1207 37 1 6.6557 -6.2674 -1.9975 38 1 7.3029 -8.4389 -1.0633 39 1 7.4809 -8.4981 -2.8345 40 1 4.8422 -13.0396 -1.2702 41 1 5.0540 -9.6756 -0.1191 42 1 4.0274 -10.3948 -1.3846 43 1 3.1365 -8.2028 -0.5195 44 1 3.4838 -8.1742 -2.2653 45 1 1.6872 -2.1412 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331272055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:04 Heat of formation + Delta-G solvation = -32.693508 kcal Electronic energy + Delta-G solvation = -27675.291923 eV Core-core repulsion = 23692.450632 eV Total energy + Delta-G solvation = -3982.841290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38331 -41.19461 -39.98959 -38.90711 -36.81340 -35.94680 -34.59143 -33.95548 -31.89466 -31.60526 -31.21183 -28.30122 -27.54094 -26.20333 -24.64050 -23.95508 -23.50187 -22.66183 -21.53222 -21.12854 -19.89701 -18.73928 -18.39918 -18.06836 -17.62826 -17.35578 -17.03158 -16.71138 -16.53017 -15.73475 -15.44074 -15.36220 -15.26598 -15.04855 -14.77347 -14.49011 -14.29094 -14.21168 -14.13000 -13.68730 -13.46967 -13.24885 -13.04568 -12.98797 -12.79800 -12.63506 -12.52390 -12.23783 -12.16915 -12.02258 -11.88305 -11.61092 -11.40750 -11.04162 -10.57706 -10.56961 -10.29424 -10.24081 -9.45495 -8.72703 -7.88244 -5.32918 -0.29286 0.15700 0.42231 1.05416 1.47295 1.49800 1.59756 1.95282 2.38537 2.51494 2.73665 3.17670 3.28685 3.54420 3.65463 3.77473 3.78204 3.82149 3.96863 3.99182 4.07118 4.26870 4.43162 4.43615 4.62567 4.67519 4.70289 4.80535 4.81769 4.87947 4.94591 4.99537 5.00951 5.11952 5.18644 5.25256 5.27685 5.30521 5.47478 5.60738 5.64314 5.71258 5.78595 6.19003 6.38727 6.51441 6.78533 6.89619 7.14228 7.84023 8.35082 9.18727 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.002040 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.716228 B =13719.724473 C =14175.374847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C 0.078 3.922 4 N -0.481 5.481 5 C 0.073 3.927 6 C 0.086 3.914 7 N -0.629 5.629 8 C 0.517 3.483 9 O -0.514 6.514 10 C 0.511 3.489 11 O -0.537 6.537 12 N -0.679 5.679 13 C 0.160 3.840 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.259 4.259 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.177 3.823 26 C -0.132 4.132 27 C -0.097 4.097 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.435 0.565 34 H 0.418 0.582 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.015 0.985 39 H 0.059 0.941 40 H 0.251 0.749 41 H 0.000 1.000 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 25.826 3.810 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.079 4.079 4 N -0.189 5.189 5 C -0.087 4.087 6 C -0.011 4.011 7 N -0.277 5.277 8 C 0.299 3.701 9 O -0.389 6.389 10 C 0.291 3.709 11 O -0.415 6.415 12 N -0.331 5.331 13 C 0.056 3.944 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.334 5.334 17 C -0.390 4.390 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.051 3.949 26 C -0.171 4.171 27 C -0.125 4.125 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.197 0.803 33 H 0.275 0.725 34 H 0.256 0.744 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.882 26.408 3.854 27.827 hybrid contribution -0.210 -2.072 -0.445 2.130 sum -8.092 24.336 3.409 25.872 Atomic orbital electron populations 1.20813 0.87840 1.04381 1.03627 1.21163 0.99292 0.92626 0.98757 1.23164 0.89535 0.98777 0.96444 1.67726 1.09267 1.30069 1.11821 1.22922 1.01573 0.85440 0.98718 1.18934 0.92002 0.86872 1.03255 1.42969 1.23740 1.08152 1.52807 1.20225 0.85341 0.85175 0.79334 1.90780 1.23879 1.84875 1.39382 1.19890 0.85339 0.85087 0.80608 1.90788 1.23994 1.85113 1.41562 1.45960 1.27780 1.08652 1.50673 1.20927 0.92647 0.81159 0.99648 1.22219 0.97644 0.98111 0.98721 1.20972 0.91719 0.86801 0.98647 1.44379 1.25886 1.22252 1.40877 1.19549 1.34097 0.88442 0.96872 0.91416 1.25771 1.02414 0.98573 0.97900 1.70165 1.49077 1.20198 1.18697 0.85214 0.77039 0.78740 0.79470 1.19179 1.22159 1.21560 1.20605 0.89039 0.94443 0.90861 1.22303 0.97827 0.94613 1.02392 1.21677 0.92492 1.00048 0.98267 0.89968 0.91084 0.88825 0.79859 0.80281 0.72497 0.74408 0.90647 0.91613 0.91279 0.96733 0.92214 0.94029 0.98212 0.91544 0.90296 0.91298 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.04 71.24 0.71 -0.26 16 2 C -0.12 -1.70 5.89 -19.79 -0.12 -1.82 16 3 C 0.08 1.13 10.85 84.70 0.92 2.05 16 4 N -0.48 -8.69 10.35 -195.28 -2.02 -10.71 16 5 C 0.07 1.21 11.12 84.86 0.94 2.15 16 6 C 0.09 1.57 6.32 38.30 0.24 1.81 16 7 N -0.63 -11.33 5.34 -304.53 -1.63 -12.96 16 8 C 0.52 11.57 7.66 87.24 0.67 12.24 16 9 O -0.51 -12.99 14.12 -3.33 -0.05 -13.03 16 10 C 0.51 13.00 7.85 87.24 0.68 13.68 16 11 O -0.54 -15.89 16.14 -3.25 -0.05 -15.95 16 12 N -0.68 -17.35 5.07 -443.84 -2.25 -19.60 16 13 C 0.16 5.01 2.42 45.02 0.11 5.12 16 14 C -0.13 -4.19 5.65 30.67 0.17 -4.02 16 15 C 0.14 5.90 6.52 86.36 0.56 6.46 16 16 N -0.61 -29.76 3.00 -699.10 -2.10 -31.86 16 17 C -0.26 -13.93 9.60 84.03 0.81 -13.12 16 18 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.81 4.94 84.86 0.42 -2.39 16 20 N -0.93 -54.10 11.08 21.65 0.24 -53.86 16 21 Si 0.97 44.04 29.58 68.60 2.03 46.07 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 C 0.18 8.14 5.31 86.36 0.46 8.60 16 26 C -0.13 -4.49 5.55 30.67 0.17 -4.32 16 27 C -0.10 -1.82 8.45 22.59 0.19 -1.63 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.09 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.43 6.28 8.30 -92.70 -0.77 5.51 16 34 H 0.42 9.41 8.07 -92.71 -0.75 8.66 16 35 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 3.47 5.96 -2.39 -0.01 3.46 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.14 2.81 6.43 -2.91 -0.02 2.79 16 Total: -1.00 -67.27 373.93 0.64 -66.63 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.48 Total: 20.71 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 6.95 Total: 24.56 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -7.75 Total: -128.99 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.10 Total: -28.98 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.27 0.64 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331272055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.935 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds