Wall clock time and date at job start Tue Mar 31 2020 16:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48498 * 109.46942 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.47399 * 29.99898 * 3 2 1 6 6 H 1.48495 * 109.47014 * 150.00244 * 3 2 1 7 7 C 1.37874 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00504 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46908 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.46998 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54758 * 68.37319 * 12 11 10 14 14 O 1.42111 * 110.54122 * 291.62375 * 12 11 10 15 15 N 1.65597 * 104.45242 * 180.02562 * 12 11 10 16 16 C 1.46503 * 119.99978 * 64.99637 * 15 12 11 17 17 C 1.53782 * 113.61408 * 145.00666 * 16 15 12 18 18 C 1.53780 * 87.08451 * 89.19756 * 17 16 15 19 19 N 1.46897 * 113.61241 * 139.98137 * 18 17 16 20 20 C 1.47017 * 110.99878 * 191.45313 * 19 18 17 21 21 C 1.53098 * 109.25974 * 177.60740 * 20 19 18 22 22 O 1.43015 * 109.25749 * 56.84552 * 21 20 19 23 23 C 1.43023 * 113.74206 * 301.33229 * 22 21 20 24 24 C 1.47012 * 111.00209 * 67.81811 * 19 18 17 25 25 C 1.53781 * 87.08093 * 25.43462 * 18 17 16 26 26 H 0.97000 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46950 * 60.00404 * 9 7 2 28 28 H 1.08999 * 109.47214 * 300.00597 * 9 7 2 29 29 H 1.08991 * 109.46976 * 60.00340 * 10 9 7 30 30 H 1.08996 * 109.46618 * 299.99949 * 10 9 7 31 31 H 1.09002 * 109.47451 * 59.99813 * 11 10 9 32 32 H 1.08999 * 109.47247 * 300.00303 * 11 10 9 33 33 H 0.97005 * 120.00277 * 245.00153 * 15 12 11 34 34 H 1.08998 * 112.84943 * 13.80533 * 16 15 12 35 35 H 1.08996 * 113.61298 * 334.64776 * 17 16 15 36 36 H 1.09007 * 113.68874 * 203.76349 * 17 16 15 37 37 H 1.08992 * 113.61512 * 270.88308 * 18 17 16 38 38 H 1.08998 * 109.50201 * 297.53776 * 20 19 18 39 39 H 1.08997 * 109.50643 * 57.67454 * 20 19 18 40 40 H 1.08998 * 109.50620 * 296.91235 * 21 20 19 41 41 H 1.08991 * 109.51078 * 176.78243 * 21 20 19 42 42 H 1.09005 * 109.50216 * 298.73480 * 23 22 21 43 43 H 1.08991 * 109.54398 * 178.62985 * 23 22 21 44 44 H 1.09002 * 109.50413 * 302.32516 * 24 19 18 45 45 H 1.08996 * 109.51086 * 62.45336 * 24 19 18 46 46 H 1.08998 * 113.61863 * 89.10958 * 25 18 17 47 47 H 1.09001 * 113.61243 * 220.02170 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0004 13 8 3.3549 -6.4264 1.2370 14 8 3.3566 -6.4261 -1.2370 15 7 1.7086 -7.7220 -0.0019 16 6 0.8503 -8.0138 -1.1528 17 6 0.7151 -9.5154 -1.4554 18 6 -0.4851 -9.5210 -0.4940 19 7 -1.6057 -10.3505 -0.9566 20 6 -2.8102 -10.1063 -0.1497 21 6 -3.9664 -10.9441 -0.7019 22 8 -3.5889 -12.3235 -0.7074 23 6 -2.4198 -12.5974 -1.4844 24 6 -1.2479 -11.7763 -0.9401 25 6 -0.6504 -8.0266 -0.8169 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.8538 -5.0446 -0.8914 32 1 0.8532 -5.0451 0.8885 33 1 1.7202 -8.3233 0.7593 34 1 1.0968 -7.4124 -2.0278 35 1 1.5588 -10.1093 -1.1041 36 1 0.4471 -9.7313 -2.4898 37 1 -0.2127 -9.7161 0.5432 38 1 -2.6181 -10.3886 0.8854 39 1 -3.0717 -9.0492 -0.1968 40 1 -4.1938 -10.6249 -1.7190 41 1 -4.8461 -10.8100 -0.0725 42 1 -2.6023 -12.3263 -2.5243 43 1 -2.1808 -13.6589 -1.4217 44 1 -0.3691 -11.9382 -1.5642 45 1 -1.0309 -12.0853 0.0824 46 1 -1.2918 -7.8340 -1.6768 47 1 -0.9090 -7.4186 0.0500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332300073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:22 Heat of formation + Delta-G solvation = -103.037643 kcal Electronic energy + Delta-G solvation = -26715.368352 eV Core-core repulsion = 22832.627911 eV Total energy + Delta-G solvation = -3882.740441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49248 -38.90366 -36.91248 -35.79451 -35.32865 -34.69252 -32.30376 -32.20532 -31.61703 -27.84002 -27.53367 -26.23748 -24.04174 -23.74536 -23.67474 -20.92345 -20.73469 -19.95071 -19.19698 -17.82646 -16.92150 -16.65263 -16.48227 -16.33152 -15.73707 -15.57401 -15.37558 -15.35853 -15.09866 -14.87414 -14.49855 -14.21905 -13.82469 -13.23509 -12.87469 -12.75052 -12.58522 -12.50155 -12.29554 -11.98532 -11.92588 -11.86965 -11.80220 -11.79071 -11.59300 -11.26332 -11.02069 -10.93383 -10.87967 -10.84025 -10.72352 -10.42931 -10.01326 -9.97083 -9.72532 -9.34766 -9.10456 -8.82926 -8.42353 -6.07377 -4.10401 0.42061 2.76478 3.29384 3.31709 3.35574 3.39618 3.50455 3.89324 4.07258 4.21254 4.34369 4.41141 4.47915 4.51599 4.57737 4.67655 4.74577 4.86513 4.88789 4.91253 5.10876 5.14565 5.19269 5.24155 5.25737 5.29374 5.37941 5.46237 5.49969 5.51057 5.60218 5.67116 5.77750 5.86569 6.06049 6.24465 6.42641 6.50996 6.62068 6.73439 6.83382 6.86126 7.54987 7.64837 7.90653 8.31107 8.95840 9.54430 11.03846 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002304 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.592380 B =12151.423197 C =13393.642391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.606 4.606 12 S 2.600 3.400 13 O -0.964 6.964 14 O -0.960 6.960 15 N -1.107 6.107 16 C 0.126 3.874 17 C -0.130 4.130 18 C 0.052 3.948 19 N -0.524 5.524 20 C 0.016 3.984 21 C 0.063 3.937 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.017 3.983 25 C -0.145 4.145 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.413 0.587 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.103 0.897 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -25.500 -2.469 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.696 3.304 13 O -0.954 6.954 14 O -0.950 6.950 15 N -0.862 5.862 16 C 0.017 3.983 17 C -0.169 4.169 18 C -0.056 4.056 19 N -0.249 5.249 20 C -0.112 4.112 21 C -0.014 4.014 22 O -0.306 6.306 23 C -0.014 4.014 24 C -0.112 4.112 25 C -0.185 4.185 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.247 0.753 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.122 0.878 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.602 -25.305 -3.006 26.091 hybrid contribution -0.021 0.865 1.142 1.432 sum -5.623 -24.440 -1.864 25.148 Atomic orbital electron populations 1.69955 1.06089 1.26788 1.50610 1.25019 0.94893 0.99381 0.95097 0.86551 0.79874 0.83161 0.78202 1.20551 1.21177 1.19754 1.21255 0.93259 0.90897 1.51047 0.92372 1.19059 0.93514 0.90442 0.97717 1.21506 0.99399 0.91686 1.01979 1.30549 1.16257 1.15753 1.11283 1.05349 0.75595 0.75194 0.74217 1.93581 1.70742 1.85876 1.45192 1.93577 1.70146 1.85673 1.45639 1.55585 1.61395 1.42329 1.26896 1.21502 0.90064 0.98181 0.88593 1.23355 0.96875 0.95791 1.00927 1.23225 0.91217 0.94000 0.97207 1.62472 1.04174 1.05330 1.52930 1.22764 0.91301 1.01542 0.95581 1.22678 0.96268 0.81005 1.01404 1.87989 1.45143 1.25661 1.71845 1.22664 0.84342 0.99384 0.94961 1.22752 0.99225 0.88411 1.00772 1.23598 0.96783 0.94781 1.03300 0.92893 0.96097 0.96154 0.91597 0.91541 0.85403 0.85336 0.75348 0.87033 0.90764 0.87925 0.91537 0.93997 0.89217 0.92135 0.88445 0.92194 0.88560 0.89428 0.94059 0.87829 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 11 C -0.61 -8.90 6.07 37.16 0.23 -8.68 16 12 S 2.60 36.39 5.43 -107.50 -0.58 35.80 16 13 O -0.96 -16.47 18.08 -57.54 -1.04 -17.51 16 14 O -0.96 -16.30 17.58 -57.54 -1.01 -17.32 16 15 N -1.11 -10.96 5.62 -4.19 -0.02 -10.99 16 16 C 0.13 1.10 4.39 -67.11 -0.29 0.80 16 17 C -0.13 -0.96 6.81 -25.92 -0.18 -1.14 16 18 C 0.05 0.38 2.99 -66.90 -0.20 0.18 16 19 N -0.52 -3.92 4.67 -225.37 -1.05 -4.97 16 20 C 0.02 0.12 5.57 -3.71 -0.02 0.10 16 21 C 0.06 0.45 7.01 37.21 0.26 0.71 16 22 O -0.39 -3.43 10.83 -35.23 -0.38 -3.82 16 23 C 0.06 0.43 7.01 37.21 0.26 0.69 16 24 C 0.02 0.11 5.55 -3.71 -0.02 0.09 16 25 C -0.14 -1.12 6.98 -25.91 -0.18 -1.30 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.65 8.14 -51.92 -0.42 1.22 16 32 H 0.13 1.69 8.14 -51.92 -0.42 1.26 16 33 H 0.41 3.40 8.76 -34.47 -0.30 3.10 16 34 H 0.11 0.99 7.76 -51.93 -0.40 0.59 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.61 7.62 -51.93 -0.40 0.21 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.51 7.51 -51.93 -0.39 0.12 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -35.31 389.50 -11.56 -46.86 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.22 Total: -1.10 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.83 Total: -23.64 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.34 Total: -41.61 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -2.43 Total: -38.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 36.39 SS G_CDS: -0.58 Total: 35.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.31 -11.56 -46.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332300073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.174 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds