Wall clock time and date at job start Tue Mar 31 2020 16:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48498 * 109.46942 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.47399 * 29.99898 * 3 2 1 6 6 H 1.48495 * 109.47014 * 150.00244 * 3 2 1 7 7 C 1.37874 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00504 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46908 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.46998 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54758 * 68.37319 * 12 11 10 14 14 O 1.42111 * 110.54122 * 291.62375 * 12 11 10 15 15 N 1.65597 * 104.45242 * 180.02562 * 12 11 10 16 16 C 1.46503 * 119.99978 * 64.99637 * 15 12 11 17 17 C 1.53782 * 113.61408 * 145.00666 * 16 15 12 18 18 C 1.53780 * 87.08451 * 89.19756 * 17 16 15 19 19 N 1.46897 * 113.61241 * 139.98137 * 18 17 16 20 20 C 1.47017 * 110.99878 * 191.45313 * 19 18 17 21 21 C 1.53098 * 109.25974 * 177.60740 * 20 19 18 22 22 O 1.43015 * 109.25749 * 56.84552 * 21 20 19 23 23 C 1.43023 * 113.74206 * 301.33229 * 22 21 20 24 24 C 1.47012 * 111.00209 * 67.81811 * 19 18 17 25 25 C 1.53781 * 87.08093 * 25.43462 * 18 17 16 26 26 H 0.97000 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46950 * 60.00404 * 9 7 2 28 28 H 1.08999 * 109.47214 * 300.00597 * 9 7 2 29 29 H 1.08991 * 109.46976 * 60.00340 * 10 9 7 30 30 H 1.08996 * 109.46618 * 299.99949 * 10 9 7 31 31 H 1.09002 * 109.47451 * 59.99813 * 11 10 9 32 32 H 1.08999 * 109.47247 * 300.00303 * 11 10 9 33 33 H 0.97005 * 120.00277 * 245.00153 * 15 12 11 34 34 H 1.08998 * 112.84943 * 13.80533 * 16 15 12 35 35 H 1.08996 * 113.61298 * 334.64776 * 17 16 15 36 36 H 1.09007 * 113.68874 * 203.76349 * 17 16 15 37 37 H 1.08992 * 113.61512 * 270.88308 * 18 17 16 38 38 H 1.08998 * 109.50201 * 297.53776 * 20 19 18 39 39 H 1.08997 * 109.50643 * 57.67454 * 20 19 18 40 40 H 1.08998 * 109.50620 * 296.91235 * 21 20 19 41 41 H 1.08991 * 109.51078 * 176.78243 * 21 20 19 42 42 H 1.09005 * 109.50216 * 298.73480 * 23 22 21 43 43 H 1.08991 * 109.54398 * 178.62985 * 23 22 21 44 44 H 1.09002 * 109.50413 * 302.32516 * 24 19 18 45 45 H 1.08996 * 109.51086 * 62.45336 * 24 19 18 46 46 H 1.08998 * 113.61863 * 89.10958 * 25 18 17 47 47 H 1.09001 * 113.61243 * 220.02170 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0004 13 8 3.3549 -6.4264 1.2370 14 8 3.3566 -6.4261 -1.2370 15 7 1.7086 -7.7220 -0.0019 16 6 0.8503 -8.0138 -1.1528 17 6 0.7151 -9.5154 -1.4554 18 6 -0.4851 -9.5210 -0.4940 19 7 -1.6057 -10.3505 -0.9566 20 6 -2.8102 -10.1063 -0.1497 21 6 -3.9664 -10.9441 -0.7019 22 8 -3.5889 -12.3235 -0.7074 23 6 -2.4198 -12.5974 -1.4844 24 6 -1.2479 -11.7763 -0.9401 25 6 -0.6504 -8.0266 -0.8169 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.8538 -5.0446 -0.8914 32 1 0.8532 -5.0451 0.8885 33 1 1.7202 -8.3233 0.7593 34 1 1.0968 -7.4124 -2.0278 35 1 1.5588 -10.1093 -1.1041 36 1 0.4471 -9.7313 -2.4898 37 1 -0.2127 -9.7161 0.5432 38 1 -2.6181 -10.3886 0.8854 39 1 -3.0717 -9.0492 -0.1968 40 1 -4.1938 -10.6249 -1.7190 41 1 -4.8461 -10.8100 -0.0725 42 1 -2.6023 -12.3263 -2.5243 43 1 -2.1808 -13.6589 -1.4217 44 1 -0.3691 -11.9382 -1.5642 45 1 -1.0309 -12.0853 0.0824 46 1 -1.2918 -7.8340 -1.6768 47 1 -0.9090 -7.4186 0.0500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332300073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:22 Heat of formation + Delta-G solvation = -130.388626 kcal Electronic energy + Delta-G solvation = -26716.554379 eV Core-core repulsion = 22832.627911 eV Total energy + Delta-G solvation = -3883.926468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08945 -39.52202 -38.17217 -37.06118 -36.45918 -35.97781 -34.15942 -33.09043 -32.14170 -29.65163 -28.12138 -26.83943 -25.60512 -24.56993 -24.35046 -22.43094 -21.47433 -20.81642 -20.11509 -18.87058 -18.55178 -17.60864 -17.30338 -17.13260 -17.04087 -16.53903 -16.42890 -15.93570 -15.92853 -15.89120 -15.64373 -15.45733 -14.50867 -14.44543 -14.12366 -13.88755 -13.60742 -13.50387 -13.42111 -13.20864 -13.13948 -13.06918 -12.96720 -12.75554 -12.62687 -12.48040 -12.40962 -12.30877 -12.15625 -11.74575 -11.63435 -11.44511 -11.36925 -11.32716 -11.06474 -10.58375 -10.57255 -10.33245 -9.40140 -8.22711 -6.33414 -0.74389 1.40368 1.40835 1.52185 1.75032 2.39793 2.75125 2.76703 2.99544 3.10954 3.22779 3.48755 3.58384 3.73892 3.81141 3.93190 3.98838 4.04471 4.08185 4.22218 4.24773 4.35059 4.35831 4.40723 4.56136 4.64811 4.67079 4.75500 4.84821 4.93066 4.93168 4.93964 4.97070 5.02515 5.07612 5.08366 5.17499 5.40625 5.46052 5.63940 5.79979 5.95632 6.01878 6.13556 6.20161 6.20170 6.82362 7.35889 8.88707 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002304 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.592380 B =12151.423197 C =13393.642391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.107 4.107 11 C -0.607 4.607 12 S 2.633 3.367 13 O -0.994 6.994 14 O -0.988 6.988 15 N -1.091 6.091 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.054 3.946 19 N -0.528 5.528 20 C 0.017 3.983 21 C 0.062 3.938 22 O -0.409 6.409 23 C 0.061 3.939 24 C 0.018 3.982 25 C -0.141 4.141 26 H 0.265 0.735 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.424 0.576 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.033 0.967 46 H 0.108 0.892 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -26.254 -2.804 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.728 3.272 13 O -0.984 6.984 14 O -0.978 6.978 15 N -0.850 5.850 16 C 0.004 3.996 17 C -0.161 4.161 18 C -0.054 4.054 19 N -0.253 5.253 20 C -0.111 4.111 21 C -0.015 4.015 22 O -0.328 6.328 23 C -0.016 4.016 24 C -0.110 4.110 25 C -0.181 4.181 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.127 0.873 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.458 -26.063 -3.336 26.837 hybrid contribution -0.124 1.026 1.226 1.604 sum -5.582 -25.037 -2.110 25.738 Atomic orbital electron populations 1.70065 1.07587 1.27870 1.51415 1.25922 0.95817 1.03187 0.94630 0.85491 0.78692 0.78598 0.78572 1.19686 1.20587 1.18981 1.21750 0.93730 0.92572 1.50963 0.92220 1.18956 0.94004 0.91767 0.95946 1.21314 0.98686 0.92584 1.02045 1.30507 1.16552 1.13508 1.13210 1.04165 0.75057 0.75216 0.72778 1.93537 1.71936 1.86470 1.46452 1.93542 1.71188 1.86239 1.46829 1.55136 1.61135 1.40833 1.27874 1.21731 0.90439 0.99420 0.88017 1.23328 0.96916 0.94484 1.01408 1.23195 0.91262 0.93790 0.97193 1.62489 1.04196 1.05721 1.52889 1.22763 0.91395 1.01841 0.95093 1.22765 0.96590 0.80363 1.01754 1.87960 1.45978 1.26541 1.72332 1.22794 0.83712 1.00283 0.94781 1.22776 0.99690 0.88007 1.00563 1.23582 0.95876 0.95060 1.03538 0.92642 0.97713 0.97940 0.91721 0.91468 0.83497 0.83662 0.73995 0.87042 0.90365 0.87115 0.91610 0.94823 0.88735 0.91975 0.87395 0.91972 0.87166 0.88313 0.94823 0.87333 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.60 4.97 29.85 0.15 1.75 16 10 C -0.11 -4.24 5.16 30.60 0.16 -4.09 16 11 C -0.61 -17.19 6.07 71.98 0.44 -16.76 16 12 S 2.63 70.59 5.43 -56.49 -0.31 70.29 16 13 O -0.99 -33.05 18.08 -127.65 -2.31 -35.36 16 14 O -0.99 -32.51 17.58 -127.65 -2.24 -34.76 16 15 N -1.09 -19.62 5.62 -167.18 -0.94 -20.56 16 16 C 0.11 1.74 4.39 45.52 0.20 1.94 16 17 C -0.12 -1.53 6.81 31.12 0.21 -1.32 16 18 C 0.05 0.69 2.99 45.44 0.14 0.83 16 19 N -0.53 -7.01 4.67 -866.93 -4.05 -11.05 16 20 C 0.02 0.23 5.57 86.31 0.48 0.71 16 21 C 0.06 0.81 7.01 72.01 0.50 1.32 16 22 O -0.41 -6.82 10.83 -148.98 -1.61 -8.43 16 23 C 0.06 0.73 7.01 72.01 0.50 1.24 16 24 C 0.02 0.21 5.55 86.31 0.48 0.69 16 25 C -0.14 -1.90 6.98 31.12 0.22 -1.68 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.42 6.13 8.76 -96.74 -0.85 5.29 16 34 H 0.11 1.78 7.76 -2.39 -0.02 1.76 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 1.14 7.62 -2.39 -0.02 1.12 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 0.95 7.51 -2.39 -0.02 0.93 16 45 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.01 389.50 -4.88 -79.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.10 Total: 14.72 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.17 Total: -45.68 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -4.70 Total: -86.64 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: -6.16 Total: -78.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 70.59 SS G_CDS: -0.31 Total: 70.29 kcal Total: -75.01 -4.88 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332300073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.500 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds