Wall clock time and date at job start Tue Mar 31 2020 16:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48505 * 109.47096 * 240.00002 * 3 2 1 5 5 H 1.48503 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47333 * 120.00314 * 3 2 1 7 7 C 1.37877 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00242 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49685 * 300.06345 * 9 7 2 11 11 C 1.53034 * 109.50054 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.54135 * 178.65213 * 11 9 7 13 13 C 1.53188 * 109.31484 * 61.35941 * 12 11 9 14 14 N 1.46925 * 108.77711 * 305.37190 * 13 12 11 15 15 C 1.34782 * 120.62562 * 233.58408 * 14 13 12 16 16 O 1.21371 * 119.99327 * 187.09814 * 15 14 13 17 17 C 1.49298 * 120.00456 * 7.09828 * 15 14 13 18 18 O 1.21400 * 119.99896 * 6.41089 * 17 15 14 19 19 N 1.34776 * 120.00204 * 186.40969 * 17 15 14 20 20 C 1.39204 * 120.00258 * 180.02562 * 19 17 15 21 21 C 1.36222 * 126.26918 * 0.02562 * 20 19 17 22 22 C 1.39693 * 107.85616 * 179.73499 * 21 20 19 23 23 N 1.30847 * 108.45831 * 0.26913 * 22 21 20 24 24 N 1.35854 * 126.27527 * 180.21080 * 20 19 17 25 25 C 1.46495 * 126.09652 * 0.02562 * 24 20 19 26 26 C 1.53004 * 117.49938 * 189.02976 * 25 24 20 27 27 C 1.52999 * 117.50198 * 120.36814 * 25 24 20 28 28 C 1.46920 * 118.73946 * 53.85551 * 14 13 12 29 29 H 0.96994 * 120.00303 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45986 * 58.62598 * 11 9 7 31 31 H 1.09001 * 109.45917 * 298.67066 * 11 9 7 32 32 H 1.09005 * 109.49493 * 301.40844 * 12 11 9 33 33 H 1.09004 * 109.50186 * 181.31832 * 12 11 9 34 34 H 1.08998 * 109.58726 * 185.57956 * 13 12 11 35 35 H 1.08996 * 109.70234 * 65.22893 * 13 12 11 36 36 H 0.96997 * 120.00232 * 359.97438 * 19 17 15 37 37 H 1.08001 * 126.06981 * 0.02562 * 21 20 19 38 38 H 1.08002 * 125.77097 * 180.24439 * 22 21 20 39 39 H 1.09005 * 115.55243 * 334.69680 * 25 24 20 40 40 H 1.08997 * 117.49717 * 359.97438 * 26 25 24 41 41 H 1.09004 * 117.49954 * 145.01422 * 26 25 24 42 42 H 1.08996 * 117.50040 * 214.97349 * 27 25 24 43 43 H 1.09001 * 117.49837 * 359.97438 * 27 25 24 44 44 H 1.08996 * 109.58453 * 65.93058 * 28 14 13 45 45 H 1.09003 * 109.58812 * 186.35178 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6231 -2.5567 0.8896 11 6 2.2451 -3.6628 0.0005 12 6 1.4812 -4.9885 0.0345 13 6 0.6053 -5.1007 -1.2173 14 7 -0.2533 -3.9114 -1.3019 15 6 -1.5898 -4.0367 -1.4237 16 8 -2.2756 -3.0551 -1.6219 17 6 -2.2265 -5.3827 -1.3149 18 8 -1.5583 -6.3467 -1.0018 19 7 -3.5430 -5.5276 -1.5642 20 6 -4.1368 -6.7825 -1.4622 21 6 -3.5123 -7.9442 -1.1216 22 6 -4.4679 -8.9631 -1.1317 23 7 -5.6215 -8.4459 -1.4692 24 7 -5.4445 -7.0736 -1.6875 25 6 -6.4851 -6.1213 -2.0827 26 6 -7.9332 -6.6154 -2.0796 27 6 -7.2090 -6.3748 -3.4066 28 6 0.3732 -2.5833 -1.2573 29 1 -0.4850 0.8400 0.0004 30 1 2.8877 -3.5914 0.8780 31 1 2.8558 -3.6187 -0.9012 32 1 0.8514 -5.0228 0.9235 33 1 2.1899 -5.8163 0.0581 34 1 -0.0145 -5.9949 -1.1506 35 1 1.2368 -5.1592 -2.1037 36 1 -4.0770 -4.7573 -1.8140 37 1 -2.4654 -8.0566 -0.8815 38 1 -4.2854 -10.0022 -0.9005 39 1 -6.3066 -5.0845 -1.7973 40 1 -8.1115 -7.6492 -1.7839 41 1 -8.7072 -5.9037 -1.7925 42 1 -7.5070 -5.5049 -3.9919 43 1 -6.9106 -7.2500 -3.9838 44 1 0.9880 -2.4393 -2.1457 45 1 -0.3998 -1.8158 -1.2170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336829826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:01 Heat of formation + Delta-G solvation = 65.894908 kcal Electronic energy + Delta-G solvation = -28681.986214 eV Core-core repulsion = 24703.420038 eV Total energy + Delta-G solvation = -3978.566176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77055 -40.49589 -38.49839 -37.31218 -37.03971 -35.23212 -33.31718 -31.84561 -31.15216 -29.83781 -29.31517 -26.16400 -25.09642 -23.86252 -23.45408 -22.85853 -21.94035 -21.46241 -20.34966 -19.90524 -18.94684 -18.24671 -17.18883 -16.65864 -16.10563 -16.06714 -15.58330 -15.48882 -15.12804 -14.84491 -14.63725 -14.20136 -13.85615 -13.79346 -13.43041 -13.24991 -13.06599 -12.88288 -12.65040 -12.21707 -11.96432 -11.88414 -11.54713 -11.44934 -11.28205 -11.04417 -11.01034 -10.82896 -10.67607 -10.54059 -10.35576 -10.16374 -9.98009 -9.31147 -9.18771 -8.99019 -8.68765 -8.49928 -8.29017 -7.96026 -6.07939 -4.15904 1.13885 1.73478 1.95126 2.57142 2.78622 3.27861 3.30873 3.33845 3.35432 3.45154 3.64925 4.06391 4.30887 4.36120 4.42418 4.45802 4.88895 4.98586 5.21713 5.22723 5.23549 5.38366 5.52586 5.56720 5.60434 5.68271 5.71558 5.88813 5.95752 6.15217 6.31501 6.38942 6.50252 6.58891 6.63652 6.74963 6.77806 6.90794 6.92098 7.01688 7.06860 7.48589 7.56934 7.67470 7.77776 7.85859 8.00797 8.23956 8.39548 8.87829 9.49882 10.97838 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002834 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.158990 B = 9878.866781 C =11095.379164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.114 4.114 12 C -0.127 4.127 13 C 0.049 3.951 14 N -0.560 5.560 15 C 0.502 3.498 16 O -0.520 6.520 17 C 0.521 3.479 18 O -0.478 6.478 19 N -0.625 5.625 20 C 0.311 3.689 21 C -0.278 4.278 22 C 0.060 3.940 23 N -0.291 5.291 24 N -0.361 5.361 25 C 0.070 3.930 26 C -0.158 4.158 27 C -0.176 4.176 28 C 0.108 3.892 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.141 0.859 35 H 0.059 0.941 36 H 0.423 0.577 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.051 0.949 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -14.621 -5.048 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.152 4.152 12 C -0.166 4.166 13 C -0.073 4.073 14 N -0.292 5.292 15 C 0.282 3.718 16 O -0.398 6.398 17 C 0.304 3.696 18 O -0.351 6.351 19 N -0.273 5.273 20 C 0.092 3.908 21 C -0.309 4.309 22 C -0.126 4.126 23 N -0.112 5.112 24 N -0.148 5.148 25 C -0.033 4.033 26 C -0.196 4.196 27 C -0.215 4.215 28 C -0.011 4.011 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.260 0.740 37 H 0.193 0.807 38 H 0.205 0.795 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.070 0.930 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.247 -14.714 -5.175 19.831 hybrid contribution 1.123 1.593 0.048 1.950 sum -11.124 -13.121 -5.127 17.949 Atomic orbital electron populations 1.69854 1.05798 1.27068 1.49380 1.25058 0.94921 0.99349 0.94704 0.86614 0.79566 0.82936 0.78652 1.20204 1.21238 1.20226 1.21059 0.92991 0.89991 1.51777 0.92227 1.19051 0.92673 0.92579 0.93477 0.95132 1.21674 0.98564 0.94297 1.00645 1.21857 0.98446 0.98669 0.97590 1.23097 0.95334 0.90580 0.98251 1.48475 1.03910 1.10615 1.66177 1.19307 0.84213 0.87204 0.81094 1.90790 1.62012 1.38369 1.48591 1.21003 0.80975 0.90959 0.76614 1.90293 1.59450 1.41079 1.44260 1.42611 1.09990 1.08040 1.66668 1.18107 0.84506 0.87065 1.01120 1.21717 1.02835 0.89399 1.16954 1.23769 0.89942 1.00399 0.98499 1.77366 1.22755 0.86271 1.24841 1.48121 1.04208 1.06578 1.55875 1.21793 0.87070 0.91574 1.02898 1.23289 0.92085 1.04163 1.00019 1.23498 1.02578 1.04527 0.90865 1.22667 0.98807 0.80216 0.99418 0.92544 0.92941 0.93159 0.92216 0.92056 0.84241 0.92285 0.73957 0.80679 0.79546 0.84157 0.86930 0.87305 0.87198 0.87890 0.93027 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 11.41 55.43 0.63 -24.17 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 2.26 -91.43 -0.21 0.79 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.26 5.10 -26.69 -0.14 -2.39 16 12 C -0.13 -2.14 6.08 -26.62 -0.16 -2.30 16 13 C 0.05 0.81 6.26 -3.71 -0.02 0.79 16 14 N -0.56 -11.01 2.97 -173.08 -0.51 -11.52 16 15 C 0.50 9.48 7.74 -11.65 -0.09 9.39 16 16 O -0.52 -11.07 15.94 5.48 0.09 -10.98 16 17 C 0.52 8.15 7.74 -11.66 -0.09 8.06 16 18 O -0.48 -7.49 10.22 5.45 0.06 -7.44 16 19 N -0.62 -8.34 5.40 -11.80 -0.06 -8.40 16 20 C 0.31 4.15 7.68 -152.85 -1.17 2.97 16 21 C -0.28 -3.64 9.65 -39.76 -0.38 -4.03 16 22 C 0.06 0.68 12.00 -17.43 -0.21 0.47 16 23 N -0.29 -3.65 11.98 30.59 0.37 -3.28 16 24 N -0.36 -4.38 3.97 -53.80 -0.21 -4.59 16 25 C 0.07 0.64 6.67 -67.93 -0.45 0.19 16 26 C -0.16 -1.19 10.19 -26.69 -0.27 -1.46 16 27 C -0.18 -1.33 10.46 -26.69 -0.28 -1.61 16 28 C 0.11 2.52 5.41 -3.49 -0.02 2.50 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.14 2.20 3.78 -56.78 -0.21 1.99 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.42 5.00 7.58 -40.82 -0.31 4.69 16 37 H 0.18 2.37 5.83 -52.49 -0.31 2.06 16 38 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.14 1.06 7.68 -51.93 -0.40 0.66 16 40 H 0.11 0.98 7.83 -51.93 -0.41 0.57 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.12 3.29 5.20 -51.93 -0.27 3.02 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -30.51 367.28 -9.12 -39.63 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.10 Total: 8.55 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.89 Total: 0.96 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.21 Total: -51.97 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.14 Total: -18.42 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.51 -9.12 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336829826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.522 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds