Wall clock time and date at job start Tue Mar 31 2020 16:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48505 * 109.47096 * 240.00002 * 3 2 1 5 5 H 1.48503 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47333 * 120.00314 * 3 2 1 7 7 C 1.37877 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00242 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49685 * 300.06345 * 9 7 2 11 11 C 1.53034 * 109.50054 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.54135 * 178.65213 * 11 9 7 13 13 C 1.53188 * 109.31484 * 61.35941 * 12 11 9 14 14 N 1.46925 * 108.77711 * 305.37190 * 13 12 11 15 15 C 1.34782 * 120.62562 * 233.58408 * 14 13 12 16 16 O 1.21371 * 119.99327 * 187.09814 * 15 14 13 17 17 C 1.49298 * 120.00456 * 7.09828 * 15 14 13 18 18 O 1.21400 * 119.99896 * 6.41089 * 17 15 14 19 19 N 1.34776 * 120.00204 * 186.40969 * 17 15 14 20 20 C 1.39204 * 120.00258 * 180.02562 * 19 17 15 21 21 C 1.36222 * 126.26918 * 0.02562 * 20 19 17 22 22 C 1.39693 * 107.85616 * 179.73499 * 21 20 19 23 23 N 1.30847 * 108.45831 * 0.26913 * 22 21 20 24 24 N 1.35854 * 126.27527 * 180.21080 * 20 19 17 25 25 C 1.46495 * 126.09652 * 0.02562 * 24 20 19 26 26 C 1.53004 * 117.49938 * 189.02976 * 25 24 20 27 27 C 1.52999 * 117.50198 * 120.36814 * 25 24 20 28 28 C 1.46920 * 118.73946 * 53.85551 * 14 13 12 29 29 H 0.96994 * 120.00303 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45986 * 58.62598 * 11 9 7 31 31 H 1.09001 * 109.45917 * 298.67066 * 11 9 7 32 32 H 1.09005 * 109.49493 * 301.40844 * 12 11 9 33 33 H 1.09004 * 109.50186 * 181.31832 * 12 11 9 34 34 H 1.08998 * 109.58726 * 185.57956 * 13 12 11 35 35 H 1.08996 * 109.70234 * 65.22893 * 13 12 11 36 36 H 0.96997 * 120.00232 * 359.97438 * 19 17 15 37 37 H 1.08001 * 126.06981 * 0.02562 * 21 20 19 38 38 H 1.08002 * 125.77097 * 180.24439 * 22 21 20 39 39 H 1.09005 * 115.55243 * 334.69680 * 25 24 20 40 40 H 1.08997 * 117.49717 * 359.97438 * 26 25 24 41 41 H 1.09004 * 117.49954 * 145.01422 * 26 25 24 42 42 H 1.08996 * 117.50040 * 214.97349 * 27 25 24 43 43 H 1.09001 * 117.49837 * 359.97438 * 27 25 24 44 44 H 1.08996 * 109.58453 * 65.93058 * 28 14 13 45 45 H 1.09003 * 109.58812 * 186.35178 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6231 -2.5567 0.8896 11 6 2.2451 -3.6628 0.0005 12 6 1.4812 -4.9885 0.0345 13 6 0.6053 -5.1007 -1.2173 14 7 -0.2533 -3.9114 -1.3019 15 6 -1.5898 -4.0367 -1.4237 16 8 -2.2756 -3.0551 -1.6219 17 6 -2.2265 -5.3827 -1.3149 18 8 -1.5583 -6.3467 -1.0018 19 7 -3.5430 -5.5276 -1.5642 20 6 -4.1368 -6.7825 -1.4622 21 6 -3.5123 -7.9442 -1.1216 22 6 -4.4679 -8.9631 -1.1317 23 7 -5.6215 -8.4459 -1.4692 24 7 -5.4445 -7.0736 -1.6875 25 6 -6.4851 -6.1213 -2.0827 26 6 -7.9332 -6.6154 -2.0796 27 6 -7.2090 -6.3748 -3.4066 28 6 0.3732 -2.5833 -1.2573 29 1 -0.4850 0.8400 0.0004 30 1 2.8877 -3.5914 0.8780 31 1 2.8558 -3.6187 -0.9012 32 1 0.8514 -5.0228 0.9235 33 1 2.1899 -5.8163 0.0581 34 1 -0.0145 -5.9949 -1.1506 35 1 1.2368 -5.1592 -2.1037 36 1 -4.0770 -4.7573 -1.8140 37 1 -2.4654 -8.0566 -0.8815 38 1 -4.2854 -10.0022 -0.9005 39 1 -6.3066 -5.0845 -1.7973 40 1 -8.1115 -7.6492 -1.7839 41 1 -8.7072 -5.9037 -1.7925 42 1 -7.5070 -5.5049 -3.9919 43 1 -6.9106 -7.2500 -3.9838 44 1 0.9880 -2.4393 -2.1457 45 1 -0.3998 -1.8158 -1.2170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336829826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:00 Heat of formation + Delta-G solvation = 47.687895 kcal Electronic energy + Delta-G solvation = -28682.775729 eV Core-core repulsion = 24703.420038 eV Total energy + Delta-G solvation = -3979.355691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83528 -41.75645 -39.90410 -38.62015 -37.99187 -36.45632 -35.15313 -33.49875 -32.04096 -31.57399 -30.36805 -27.73367 -26.87655 -25.02598 -24.48538 -23.57897 -23.45018 -22.67462 -21.39464 -21.20546 -20.32614 -19.34687 -18.64842 -18.21995 -17.74650 -17.29342 -16.79835 -16.53997 -16.39894 -16.17115 -15.91497 -15.58879 -15.24612 -15.04196 -14.76760 -14.57720 -14.42774 -14.08560 -13.89826 -13.79660 -13.48132 -13.03859 -12.85270 -12.56664 -12.52214 -12.40590 -12.29044 -12.19724 -12.15659 -11.78610 -11.71383 -11.67214 -11.53996 -11.16855 -10.98134 -10.54334 -10.12329 -9.84293 -9.61082 -9.29997 -8.12326 -6.27962 -0.11009 0.64599 0.87802 1.43242 1.43800 1.51965 1.53281 1.79201 2.06676 2.33019 2.43368 2.68278 3.02416 3.17439 3.36123 3.67479 3.85175 4.03619 4.12407 4.16387 4.19439 4.27087 4.40633 4.59084 4.62390 4.64533 4.67596 4.73982 4.81878 4.91616 5.05336 5.06497 5.06948 5.13640 5.22043 5.24450 5.33660 5.44559 5.56939 5.63902 5.74218 5.83902 5.92602 5.93459 6.27107 6.34411 6.50334 6.65318 6.78293 6.86173 7.41774 8.91637 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002834 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.158990 B = 9878.866781 C =11095.379164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.009 1.009 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.048 3.952 14 N -0.567 5.567 15 C 0.498 3.502 16 O -0.551 6.551 17 C 0.533 3.467 18 O -0.477 6.477 19 N -0.611 5.611 20 C 0.293 3.707 21 C -0.288 4.288 22 C 0.063 3.937 23 N -0.304 5.304 24 N -0.360 5.360 25 C 0.040 3.960 26 C -0.148 4.148 27 C -0.166 4.166 28 C 0.122 3.878 29 H 0.262 0.738 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.076 0.924 36 H 0.429 0.571 37 H 0.172 0.828 38 H 0.221 0.779 39 H 0.154 0.846 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 -16.065 -5.567 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.009 0.991 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.072 4.072 14 N -0.298 5.298 15 C 0.279 3.721 16 O -0.430 6.430 17 C 0.315 3.685 18 O -0.350 6.350 19 N -0.259 5.259 20 C 0.074 3.926 21 C -0.319 4.319 22 C -0.123 4.123 23 N -0.126 5.126 24 N -0.146 5.146 25 C -0.062 4.062 26 C -0.185 4.185 27 C -0.204 4.204 28 C 0.001 3.999 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.268 0.732 37 H 0.189 0.811 38 H 0.237 0.763 39 H 0.171 0.829 40 H 0.118 0.882 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.202 -16.194 -5.700 21.062 hybrid contribution 1.028 1.985 0.213 2.246 sum -11.174 -14.209 -5.487 18.891 Atomic orbital electron populations 1.70026 1.07265 1.27487 1.50472 1.25845 0.95618 1.02738 0.94466 0.85623 0.78310 0.78826 0.78984 1.19286 1.21344 1.19589 1.21459 0.93343 0.91291 1.51303 0.91950 1.18987 0.93102 0.93845 0.92078 0.99084 1.21572 0.97770 0.94162 1.01065 1.21824 0.98707 0.98143 0.97162 1.23346 0.95387 0.89535 0.98917 1.48452 1.04733 1.10254 1.66375 1.19805 0.83893 0.88376 0.80026 1.90767 1.62655 1.39935 1.49685 1.20078 0.81740 0.89266 0.77413 1.90277 1.59731 1.40332 1.44690 1.42309 1.09116 1.08682 1.65788 1.18176 0.85398 0.86747 1.02292 1.21838 1.03064 0.89938 1.17073 1.24292 0.88918 1.01630 0.97420 1.77346 1.23458 0.86622 1.25142 1.48347 1.04210 1.06799 1.55290 1.22245 0.87431 0.91827 1.04677 1.23350 0.91501 1.03982 0.99676 1.23532 1.01541 1.04811 0.90504 1.22107 0.97555 0.81439 0.98814 0.92933 0.92852 0.92315 0.93377 0.88217 0.82860 0.90547 0.73210 0.81095 0.76257 0.82877 0.88184 0.84979 0.85017 0.89144 0.93271 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.16 11.41 21.45 0.24 -52.92 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -28.71 8.56 25.60 0.22 -28.49 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.93 2.26 -11.32 -0.03 1.90 16 10 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 11 C -0.11 -4.19 5.10 30.62 0.16 -4.03 16 12 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 13 C 0.05 1.52 6.26 86.36 0.54 2.06 16 14 N -0.57 -22.45 2.97 -819.85 -2.43 -24.88 16 15 C 0.50 19.08 7.74 87.22 0.67 19.75 16 16 O -0.55 -24.27 15.94 -3.31 -0.05 -24.33 16 17 C 0.53 16.39 7.74 87.22 0.67 17.07 16 18 O -0.48 -14.34 10.22 -3.40 -0.03 -14.38 16 19 N -0.61 -15.98 5.40 -309.57 -1.67 -17.65 16 20 C 0.29 7.53 7.68 131.25 1.01 8.54 16 21 C -0.29 -7.16 9.65 22.15 0.21 -6.95 16 22 C 0.06 1.32 12.00 85.19 1.02 2.34 16 23 N -0.30 -7.20 11.98 -57.13 -0.68 -7.89 16 24 N -0.36 -8.33 3.97 -324.12 -1.29 -9.62 16 25 C 0.04 0.69 6.67 44.99 0.30 0.99 16 26 C -0.15 -1.96 10.19 30.62 0.31 -1.65 16 27 C -0.17 -2.21 10.46 30.62 0.32 -1.89 16 28 C 0.12 5.84 5.41 86.51 0.47 6.31 16 29 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.16 4.52 3.78 -79.13 -0.30 4.22 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.43 10.05 7.58 -92.71 -0.70 9.34 16 37 H 0.17 4.37 5.83 -2.91 -0.02 4.36 16 38 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.15 2.11 7.68 -2.38 -0.02 2.10 16 40 H 0.10 1.62 7.83 -2.39 -0.02 1.60 16 41 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.09 4.81 5.20 -2.39 -0.01 4.80 16 Total: -1.00 -67.85 367.28 2.67 -65.18 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.04 Total: 27.98 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.52 Total: 13.48 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -5.83 Total: -112.95 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.09 Total: -38.71 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.85 2.67 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336829826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.870 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds