Wall clock time and date at job start Tue Mar 31 2020 17:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38837 * 120.33863 * 2 1 4 4 C 1.38363 * 118.49285 * 180.02562 * 3 2 1 5 5 C 1.39077 * 119.10098 * 359.97438 * 4 3 2 6 6 N 1.39240 * 119.70185 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00318 * 174.58053 * 6 5 4 8 8 O 1.21364 * 120.00189 * 5.05845 * 7 6 5 9 9 C 1.49366 * 120.00306 * 185.05882 * 7 6 5 10 10 O 1.21360 * 120.00291 * 353.67995 * 9 7 6 11 11 N 1.34780 * 119.99990 * 173.67923 * 9 7 6 12 12 C 1.47083 * 120.87790 * 171.54422 * 11 9 7 13 13 C 1.53691 * 108.27785 * 128.75350 * 12 11 9 14 14 N 1.46905 * 109.25944 * 54.08004 * 13 12 11 15 15 C 1.46897 * 110.99975 * 172.60729 * 14 13 12 16 16 C 1.50692 * 109.47429 * 294.29839 * 15 14 13 17 17 H 1.07997 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00135 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00121 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00135 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47406 * 89.99639 * 20 18 16 22 22 H 1.48500 * 109.47277 * 209.99840 * 20 18 16 23 23 H 1.48505 * 109.47178 * 330.00007 * 20 18 16 24 24 C 1.46897 * 111.26503 * 296.75857 * 14 13 12 25 25 C 1.47075 * 120.88453 * 351.81408 * 11 9 7 26 26 N 1.32386 * 120.59867 * 0.25741 * 5 4 3 27 27 C 1.31909 * 121.63286 * 359.47673 * 26 5 4 28 28 H 1.09003 * 109.46988 * 90.00462 * 1 2 3 29 29 H 1.09002 * 109.46971 * 210.00013 * 1 2 3 30 30 H 1.08993 * 109.47626 * 330.00296 * 1 2 3 31 31 H 1.08000 * 120.75515 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.44540 * 180.02562 * 4 3 2 33 33 H 0.97007 * 119.99804 * 354.58369 * 6 5 4 34 34 H 1.09009 * 109.62704 * 248.51986 * 12 11 9 35 35 H 1.08996 * 109.63248 * 9.09841 * 12 11 9 36 36 H 1.08998 * 109.64791 * 294.07285 * 13 12 11 37 37 H 1.09005 * 109.42264 * 173.94300 * 13 12 11 38 38 H 1.09001 * 109.47266 * 54.30298 * 15 14 13 39 39 H 1.09008 * 109.46664 * 174.29825 * 15 14 13 40 40 H 0.97003 * 120.00290 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49666 * 303.14150 * 24 14 13 42 42 H 1.08998 * 109.49343 * 183.06702 * 24 14 13 43 43 H 1.09001 * 109.62653 * 350.90230 * 25 11 9 44 44 H 1.08998 * 109.62768 * 111.47811 * 25 11 9 45 45 H 1.08005 * 119.57209 * 180.24816 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1982 0.0000 4 6 3.5912 1.1537 -0.0005 5 6 4.2281 -0.0827 -0.0005 6 7 5.6192 -0.1421 -0.0016 7 6 6.2430 -1.3317 0.1086 8 8 5.5955 -2.3581 0.1164 9 6 7.7314 -1.3870 0.2213 10 8 8.3873 -0.3733 0.0986 11 7 8.3461 -2.5626 0.4591 12 6 9.8109 -2.6759 0.3911 13 6 10.3038 -3.3384 1.6874 14 7 9.5917 -4.6082 1.8837 15 6 10.1543 -5.3579 3.0147 16 6 11.5647 -5.7763 2.6883 17 1 11.9998 -5.5114 1.7359 18 6 12.2997 -6.4973 3.6053 19 7 13.5308 -6.8620 3.3205 20 14 11.5470 -6.9562 5.2521 21 1 10.8662 -8.2708 5.1362 22 1 12.6166 -7.0415 6.2787 23 1 10.5596 -5.9210 5.6508 24 6 8.1503 -4.3885 2.0626 25 6 7.5695 -3.7676 0.7877 26 7 3.5237 -1.2036 -0.0051 27 6 2.2047 -1.1918 0.0004 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6862 2.1437 -0.0004 32 1 4.1682 2.0667 -0.0001 33 1 6.1394 0.6727 -0.0817 34 1 10.0914 -3.2881 -0.4661 35 1 10.2509 -1.6833 0.2954 36 1 10.1103 -2.6783 2.5329 37 1 11.3743 -3.5297 1.6123 38 1 10.1591 -4.7262 3.9030 39 1 9.5467 -6.2434 3.2019 40 1 14.0478 -7.3696 3.9655 41 1 7.9866 -3.7138 2.9029 42 1 7.6588 -5.3412 2.2597 43 1 6.5268 -3.4971 0.9544 44 1 7.6386 -4.4826 -0.0320 45 1 1.6633 -2.1264 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338296957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:57 Heat of formation + Delta-G solvation = 14.411619 kcal Electronic energy + Delta-G solvation = -27960.587547 eV Core-core repulsion = 23979.788888 eV Total energy + Delta-G solvation = -3980.798659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46991 -40.36702 -38.74431 -37.71677 -35.84497 -34.41532 -33.31229 -32.37890 -31.84553 -30.86090 -28.98857 -27.57841 -26.09465 -24.81075 -24.14144 -23.18735 -22.22883 -21.44548 -20.68647 -19.60752 -18.40891 -17.70666 -16.90346 -16.69197 -16.34398 -16.29642 -15.62113 -15.22346 -14.98916 -14.68680 -14.62927 -14.58620 -14.22203 -14.13271 -13.92991 -13.48944 -13.44242 -13.20999 -12.96070 -12.88935 -12.45475 -12.39093 -12.14333 -11.61717 -11.47145 -11.26089 -11.03114 -10.87408 -10.80677 -10.56566 -10.40769 -10.19448 -9.98572 -9.85435 -9.36636 -9.05161 -8.68646 -8.59872 -8.54025 -7.46831 -6.08437 -4.06370 0.55990 0.91344 1.43637 2.00619 3.01092 3.17709 3.26685 3.34336 3.36080 3.52832 3.94189 4.23817 4.39260 4.39446 4.51378 4.59971 4.64835 4.71027 5.00995 5.17010 5.22780 5.23162 5.34457 5.36870 5.42736 5.52067 5.54365 5.57970 5.73706 5.75045 5.83364 5.88109 6.08490 6.14894 6.30656 6.34558 6.41758 6.52298 6.61734 6.80153 6.91920 7.19159 7.42581 7.53127 7.77441 7.80679 7.86093 7.95092 8.60276 8.98861 9.52954 11.04349 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.002286 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.839423 B =12244.352479 C =13009.964575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.171 4.171 3 C -0.049 4.049 4 C -0.198 4.198 5 C 0.353 3.647 6 N -0.638 5.638 7 C 0.502 3.498 8 O -0.439 6.439 9 C 0.506 3.494 10 O -0.531 6.531 11 N -0.570 5.570 12 C 0.111 3.889 13 C 0.051 3.949 14 N -0.528 5.528 15 C 0.162 3.838 16 C -0.512 4.512 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.037 3.963 25 C 0.080 3.920 26 N -0.473 5.473 27 C 0.134 3.866 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.429 0.571 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.106 0.894 38 H -0.011 1.011 39 H 0.026 0.974 40 H 0.264 0.736 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.937 17.321 -7.347 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.174 4.174 3 C -0.075 4.075 4 C -0.221 4.221 5 C 0.123 3.877 6 N -0.287 5.287 7 C 0.284 3.716 8 O -0.307 6.307 9 C 0.287 3.713 10 O -0.409 6.409 11 N -0.303 5.303 12 C -0.010 4.010 13 C -0.078 4.078 14 N -0.252 5.252 15 C 0.036 3.964 16 C -0.550 4.550 17 H 0.100 0.900 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.092 4.092 25 C -0.042 4.042 26 N -0.187 5.187 27 C -0.025 4.025 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.268 0.732 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.124 0.876 38 H 0.006 0.994 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.244 15.852 -7.729 29.980 hybrid contribution -0.435 1.257 1.664 2.130 sum -24.679 17.108 -6.065 30.636 Atomic orbital electron populations 1.20658 0.90053 1.03074 1.02481 1.20902 0.97777 0.94129 1.04577 1.21262 0.92912 0.98390 0.94941 1.21492 0.95637 0.96997 1.07944 1.18419 0.84034 0.90082 0.95205 1.43254 1.03935 1.11095 1.70386 1.20569 0.89169 0.83854 0.78041 1.90661 1.66596 1.31541 1.41908 1.19765 0.87590 0.84376 0.79535 1.90744 1.66221 1.33206 1.50776 1.48160 1.08636 1.08868 1.64594 1.22183 0.77082 1.01972 0.99775 1.22453 1.01103 0.89867 0.94347 1.61933 1.00450 1.18149 1.44710 1.20182 0.96535 0.92571 0.87099 1.21006 0.95457 1.34559 1.03951 0.90028 1.24898 0.94747 0.95500 0.98153 1.69890 1.09288 1.38671 1.35871 0.86864 0.79194 0.79375 0.84325 1.20094 1.21192 1.19350 1.22499 0.91245 1.00051 0.95398 1.22941 0.97770 0.85455 0.98001 1.67639 1.08202 1.28357 1.14503 1.22611 0.88485 0.97772 0.93588 0.91071 0.91182 0.91473 0.84383 0.84333 0.73231 0.89848 0.88857 0.95503 0.87631 0.99352 0.95556 0.92614 0.95624 0.89751 0.85307 0.90194 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.03 36.01 0.36 -0.07 16 2 C -0.17 -1.18 5.90 -104.45 -0.62 -1.80 16 3 C -0.05 -0.31 9.85 -39.31 -0.39 -0.70 16 4 C -0.20 -1.49 9.94 -39.22 -0.39 -1.88 16 5 C 0.35 3.79 7.42 -154.82 -1.15 2.64 16 6 N -0.64 -6.90 5.38 -11.86 -0.06 -6.96 16 7 C 0.50 6.78 7.70 -11.63 -0.09 6.69 16 8 O -0.44 -6.66 11.46 5.48 0.06 -6.60 16 9 C 0.51 7.46 7.74 -11.62 -0.09 7.37 16 10 O -0.53 -8.40 15.96 5.49 0.09 -8.31 16 11 N -0.57 -8.82 3.00 -172.73 -0.52 -9.34 16 12 C 0.11 1.77 6.65 -3.37 -0.02 1.75 16 13 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 14 N -0.53 -10.83 4.62 -235.47 -1.09 -11.92 16 15 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 16 C -0.51 -14.24 8.96 -34.44 -0.31 -14.55 16 17 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 20 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 25 C 0.08 1.21 6.10 -3.61 -0.02 1.19 16 26 N -0.47 -5.79 7.89 -12.39 -0.10 -5.88 16 27 C 0.13 1.22 10.85 -17.57 -0.19 1.03 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.43 3.61 8.18 -40.82 -0.33 3.28 16 34 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.09 1.42 7.05 -51.93 -0.37 1.05 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 2.17 6.67 -51.93 -0.35 1.82 16 38 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 39 H 0.03 0.63 7.40 -51.92 -0.38 0.25 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 43 H 0.13 1.92 4.45 -54.20 -0.24 1.67 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -33.86 367.64 -9.27 -43.12 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.24 Total: 1.11 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -3.06 Total: 8.98 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.99 Total: -60.53 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.15 Total: -14.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.86 -9.27 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338296957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.535 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds