Wall clock time and date at job start Tue Mar 31 2020 17:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38837 * 120.33863 * 2 1 4 4 C 1.38363 * 118.49285 * 180.02562 * 3 2 1 5 5 C 1.39077 * 119.10098 * 359.97438 * 4 3 2 6 6 N 1.39240 * 119.70185 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00318 * 174.58053 * 6 5 4 8 8 O 1.21364 * 120.00189 * 5.05845 * 7 6 5 9 9 C 1.49366 * 120.00306 * 185.05882 * 7 6 5 10 10 O 1.21360 * 120.00291 * 353.67995 * 9 7 6 11 11 N 1.34780 * 119.99990 * 173.67923 * 9 7 6 12 12 C 1.47083 * 120.87790 * 171.54422 * 11 9 7 13 13 C 1.53691 * 108.27785 * 128.75350 * 12 11 9 14 14 N 1.46905 * 109.25944 * 54.08004 * 13 12 11 15 15 C 1.46897 * 110.99975 * 172.60729 * 14 13 12 16 16 C 1.50692 * 109.47429 * 294.29839 * 15 14 13 17 17 H 1.07997 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00135 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00121 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00135 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47406 * 89.99639 * 20 18 16 22 22 H 1.48500 * 109.47277 * 209.99840 * 20 18 16 23 23 H 1.48505 * 109.47178 * 330.00007 * 20 18 16 24 24 C 1.46897 * 111.26503 * 296.75857 * 14 13 12 25 25 C 1.47075 * 120.88453 * 351.81408 * 11 9 7 26 26 N 1.32386 * 120.59867 * 0.25741 * 5 4 3 27 27 C 1.31909 * 121.63286 * 359.47673 * 26 5 4 28 28 H 1.09003 * 109.46988 * 90.00462 * 1 2 3 29 29 H 1.09002 * 109.46971 * 210.00013 * 1 2 3 30 30 H 1.08993 * 109.47626 * 330.00296 * 1 2 3 31 31 H 1.08000 * 120.75515 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.44540 * 180.02562 * 4 3 2 33 33 H 0.97007 * 119.99804 * 354.58369 * 6 5 4 34 34 H 1.09009 * 109.62704 * 248.51986 * 12 11 9 35 35 H 1.08996 * 109.63248 * 9.09841 * 12 11 9 36 36 H 1.08998 * 109.64791 * 294.07285 * 13 12 11 37 37 H 1.09005 * 109.42264 * 173.94300 * 13 12 11 38 38 H 1.09001 * 109.47266 * 54.30298 * 15 14 13 39 39 H 1.09008 * 109.46664 * 174.29825 * 15 14 13 40 40 H 0.97003 * 120.00290 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49666 * 303.14150 * 24 14 13 42 42 H 1.08998 * 109.49343 * 183.06702 * 24 14 13 43 43 H 1.09001 * 109.62653 * 350.90230 * 25 11 9 44 44 H 1.08998 * 109.62768 * 111.47811 * 25 11 9 45 45 H 1.08005 * 119.57209 * 180.24816 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1982 0.0000 4 6 3.5912 1.1537 -0.0005 5 6 4.2281 -0.0827 -0.0005 6 7 5.6192 -0.1421 -0.0016 7 6 6.2430 -1.3317 0.1086 8 8 5.5955 -2.3581 0.1164 9 6 7.7314 -1.3870 0.2213 10 8 8.3873 -0.3733 0.0986 11 7 8.3461 -2.5626 0.4591 12 6 9.8109 -2.6759 0.3911 13 6 10.3038 -3.3384 1.6874 14 7 9.5917 -4.6082 1.8837 15 6 10.1543 -5.3579 3.0147 16 6 11.5647 -5.7763 2.6883 17 1 11.9998 -5.5114 1.7359 18 6 12.2997 -6.4973 3.6053 19 7 13.5308 -6.8620 3.3205 20 14 11.5470 -6.9562 5.2521 21 1 10.8662 -8.2708 5.1362 22 1 12.6166 -7.0415 6.2787 23 1 10.5596 -5.9210 5.6508 24 6 8.1503 -4.3885 2.0626 25 6 7.5695 -3.7676 0.7877 26 7 3.5237 -1.2036 -0.0051 27 6 2.2047 -1.1918 0.0004 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6862 2.1437 -0.0004 32 1 4.1682 2.0667 -0.0001 33 1 6.1394 0.6727 -0.0817 34 1 10.0914 -3.2881 -0.4661 35 1 10.2509 -1.6833 0.2954 36 1 10.1103 -2.6783 2.5329 37 1 11.3743 -3.5297 1.6123 38 1 10.1591 -4.7262 3.9030 39 1 9.5467 -6.2434 3.2019 40 1 14.0478 -7.3696 3.9655 41 1 7.9866 -3.7138 2.9029 42 1 7.6588 -5.3412 2.2597 43 1 6.5268 -3.4971 0.9544 44 1 7.6386 -4.4826 -0.0320 45 1 1.6633 -2.1264 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338296957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:56 Heat of formation + Delta-G solvation = -9.778298 kcal Electronic energy + Delta-G solvation = -27961.636500 eV Core-core repulsion = 23979.788888 eV Total energy + Delta-G solvation = -3981.847612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41949 -41.25910 -39.83708 -39.07068 -36.82940 -35.80471 -34.42475 -33.93961 -32.43526 -32.23583 -30.70870 -28.42158 -27.46309 -25.88592 -25.07405 -24.32424 -23.42659 -22.75153 -21.88851 -20.81569 -19.39815 -18.97135 -18.60083 -17.95815 -17.38355 -17.17118 -16.57710 -16.21418 -16.17737 -16.09769 -15.89927 -15.68991 -15.55954 -15.20511 -15.04202 -14.89227 -14.48110 -14.34225 -13.95952 -13.84540 -13.61105 -13.31228 -13.22063 -12.90887 -12.85408 -12.59069 -12.47238 -12.33012 -12.25356 -12.01998 -11.88397 -11.70857 -11.47883 -10.80914 -10.76990 -10.74777 -10.03684 -9.97498 -9.21859 -9.11570 -8.28568 -6.31981 -0.22360 0.32236 0.52771 1.00284 1.34901 1.35748 1.45993 1.94829 2.15608 2.33708 2.86830 2.95335 3.03312 3.13250 3.57274 3.85981 3.88564 3.96057 4.04129 4.08988 4.12920 4.16005 4.24435 4.34055 4.47984 4.57701 4.73177 4.76719 4.78423 4.89859 4.90603 4.90727 4.93551 4.95056 5.06630 5.12525 5.19910 5.33249 5.37509 5.50470 5.68279 5.82761 5.89979 6.06243 6.24722 6.42645 6.57889 6.70766 6.74001 7.12604 7.31437 8.87461 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.002286 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.839423 B =12244.352479 C =13009.964575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.160 4.160 3 C -0.051 4.051 4 C -0.187 4.187 5 C 0.318 3.682 6 N -0.626 5.626 7 C 0.506 3.494 8 O -0.461 6.461 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.577 5.577 12 C 0.123 3.877 13 C 0.056 3.944 14 N -0.540 5.540 15 C 0.171 3.829 16 C -0.516 4.516 17 H 0.044 0.956 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.946 3.054 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.255 1.255 24 C 0.038 3.962 25 C 0.092 3.908 26 N -0.513 5.513 27 C 0.109 3.891 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.438 0.562 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.023 0.977 37 H 0.080 0.920 38 H -0.015 1.015 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.026 0.974 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.266 19.117 -6.826 34.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.076 4.076 4 C -0.209 4.209 5 C 0.089 3.911 6 N -0.275 5.275 7 C 0.287 3.713 8 O -0.332 6.332 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.309 5.309 12 C 0.001 3.999 13 C -0.073 4.073 14 N -0.265 5.265 15 C 0.044 3.956 16 C -0.554 4.554 17 H 0.062 0.938 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.769 3.231 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.179 1.179 24 C -0.090 4.090 25 C -0.030 4.030 26 N -0.227 5.227 27 C -0.049 4.049 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.279 0.721 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.003 0.997 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.100 0.900 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -27.620 17.697 -7.228 33.590 hybrid contribution 0.509 0.817 1.399 1.698 sum -27.111 18.514 -5.829 33.342 Atomic orbital electron populations 1.20734 0.87894 1.04133 1.03381 1.21252 0.99293 0.93593 1.02124 1.21735 0.92560 0.99618 0.93726 1.21826 0.96427 0.96696 1.05981 1.18687 0.83629 0.91109 0.97713 1.43108 1.04491 1.10450 1.69477 1.20238 0.88264 0.84537 0.78284 1.90638 1.66559 1.32373 1.43581 1.20018 0.88347 0.83767 0.78695 1.90732 1.66750 1.33477 1.51083 1.48174 1.08275 1.09361 1.65114 1.21988 0.77787 1.02092 0.98062 1.22354 0.99709 0.89387 0.95863 1.61848 1.02411 1.18896 1.43305 1.19952 0.94430 0.93141 0.88028 1.21223 0.97481 1.34178 1.02499 0.93822 1.25811 0.95109 0.95516 1.02419 1.70040 1.10996 1.39967 1.37559 0.85741 0.78582 0.79677 0.79071 1.18884 1.20843 1.17877 1.22593 0.88959 1.00947 0.96538 1.22869 0.97877 0.85249 0.96964 1.67484 1.09757 1.29900 1.15587 1.22894 0.87884 0.99324 0.94768 0.90090 0.90712 0.89892 0.80930 0.81609 0.72101 0.89515 0.87973 0.95844 0.90216 0.99700 0.94860 0.92427 0.95583 0.88586 0.84415 0.90036 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.03 71.24 0.71 0.18 16 2 C -0.16 -1.82 5.90 -19.75 -0.12 -1.93 16 3 C -0.05 -0.48 9.85 22.44 0.22 -0.26 16 4 C -0.19 -2.32 9.94 22.50 0.22 -2.09 16 5 C 0.32 6.44 7.42 132.97 0.99 7.43 16 6 N -0.63 -12.93 5.38 -309.79 -1.67 -14.60 16 7 C 0.51 13.37 7.70 87.24 0.67 14.04 16 8 O -0.46 -13.87 11.46 -3.29 -0.04 -13.90 16 9 C 0.51 14.67 7.74 87.24 0.68 15.35 16 10 O -0.54 -16.66 15.96 -3.28 -0.05 -16.71 16 11 N -0.58 -17.54 3.00 -818.74 -2.46 -20.00 16 12 C 0.12 3.91 6.65 86.50 0.57 4.49 16 13 C 0.06 2.15 5.47 86.53 0.47 2.62 16 14 N -0.54 -22.24 4.62 -898.90 -4.15 -26.39 16 15 C 0.17 8.19 3.79 85.56 0.32 8.51 16 16 C -0.52 -29.49 8.96 25.60 0.23 -29.26 16 17 H 0.04 2.76 7.37 -2.91 -0.02 2.74 16 18 C 0.01 0.52 5.47 84.65 0.46 0.99 16 19 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 20 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 24 C 0.04 1.28 5.62 86.38 0.49 1.77 16 25 C 0.09 2.72 6.10 86.35 0.53 3.24 16 26 N -0.51 -12.29 7.89 -193.11 -1.52 -13.81 16 27 C 0.11 1.88 10.85 84.65 0.92 2.80 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.34 8.09 -2.39 -0.02 0.32 16 30 H 0.08 0.20 8.09 -2.39 -0.02 0.18 16 31 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 32 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.44 6.82 8.18 -92.70 -0.76 6.06 16 34 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.10 3.08 7.05 -2.39 -0.02 3.06 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 3.46 6.67 -2.38 -0.02 3.44 16 38 H -0.01 -0.71 7.18 -2.39 -0.02 -0.73 16 39 H 0.03 1.55 7.40 -2.38 -0.02 1.53 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 2.98 7.99 -2.39 -0.02 2.96 16 43 H 0.14 3.99 4.45 -38.38 -0.17 3.82 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.77 367.64 -0.28 -75.05 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.05 Total: 15.03 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 7.37 Total: 27.87 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -9.50 Total: -133.25 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.09 Total: -30.61 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -74.77 -0.28 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338296957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.276 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds