Wall clock time and date at job start Tue Mar 31 2020 16:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34963 * 125.97769 * 124.71571 * 10 9 7 12 12 C 1.35249 * 107.85944 * 179.83673 * 11 10 9 13 13 C 1.40398 * 107.86771 * 0.42268 * 12 11 10 14 14 N 1.40199 * 125.97682 * 179.71811 * 13 12 11 15 15 C 1.34776 * 119.99374 * 0.02562 * 14 13 12 16 16 O 1.21587 * 120.00366 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99593 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99748 * 179.97438 * 17 15 14 19 19 C 1.47200 * 109.46819 * 179.97438 * 18 17 15 20 20 C 9.23161 * 153.69211 * 320.77941 * 10 1 2 21 21 C 9.04609 * 137.37036 * 314.26550 * 12 1 2 22 22 H 1.08999 * 109.47570 * 290.78233 * 21 20 19 23 23 C 1.53085 * 109.47911 * 50.81790 * 21 20 19 24 24 C 1.53181 * 109.16248 * 177.59143 * 23 21 20 25 25 C 1.53175 * 109.03656 * 303.01839 * 24 23 21 26 26 C 1.53093 * 109.16235 * 56.97834 * 25 24 23 27 27 O 1.42901 * 109.47761 * 170.75959 * 21 20 19 28 28 N 1.31217 * 108.05323 * 359.73698 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08000 * 126.07088 * 0.02562 * 11 10 9 33 33 H 1.08001 * 126.06566 * 180.13177 * 12 11 10 34 34 H 0.96995 * 120.00350 * 180.02562 * 14 13 12 35 35 H 0.96995 * 120.00132 * 359.97438 * 17 15 14 36 36 H 1.08997 * 109.47469 * 300.00145 * 18 17 15 37 37 H 1.09001 * 109.47152 * 60.00267 * 18 17 15 38 38 H 1.09005 * 109.52673 * 297.49506 * 23 21 20 39 39 H 1.08997 * 109.52539 * 57.68465 * 23 21 20 40 40 H 1.08996 * 109.54261 * 183.15396 * 24 23 21 41 41 H 1.09002 * 109.61365 * 62.93083 * 24 23 21 42 42 H 1.09006 * 109.52352 * 297.07894 * 25 24 23 43 43 H 1.08997 * 109.52477 * 176.88407 * 25 24 23 44 44 H 1.08999 * 109.48482 * 182.41051 * 26 25 24 45 45 H 1.09000 * 109.48402 * 62.37660 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2452 -4.6235 0.8830 12 6 3.2603 -5.4453 0.5317 13 6 3.8689 -4.9120 -0.6157 14 7 4.9655 -5.4594 -1.2963 15 6 5.5297 -6.6016 -0.8564 16 8 5.0875 -7.1574 0.1304 17 7 6.5843 -7.1276 -1.5104 18 6 7.1980 -8.3688 -1.0319 19 6 8.3214 -8.7315 -1.9113 20 6 9.2173 -9.0207 -2.6126 21 6 10.3408 -9.3834 -3.4920 22 1 11.0523 -9.9962 -2.9386 23 6 9.8143 -10.1716 -4.6941 24 6 10.9801 -10.4930 -5.6343 25 6 11.6619 -9.1859 -6.0497 26 6 12.1170 -8.4357 -4.7952 27 8 10.9899 -8.1956 -3.9501 28 7 3.2321 -3.8113 -0.9394 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 1.5838 -4.7547 1.7267 33 1 3.5539 -6.3487 1.0455 34 1 5.3181 -5.0162 -2.0837 35 1 6.9369 -6.6844 -2.2978 36 1 7.5637 -8.2250 -0.0152 37 1 6.4568 -9.1680 -1.0417 38 1 9.3576 -11.0995 -4.3497 39 1 9.0725 -9.5746 -5.2246 40 1 10.6038 -11.0054 -6.5197 41 1 11.6986 -11.1320 -5.1209 42 1 10.9575 -8.5688 -6.6076 43 1 12.5267 -9.4087 -6.6747 44 1 12.5648 -7.4844 -5.0828 45 1 12.8520 -9.0362 -4.2591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354638409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:58 Heat of formation + Delta-G solvation = 56.194072 kcal Electronic energy + Delta-G solvation = -26066.776227 eV Core-core repulsion = 22087.789391 eV Total energy + Delta-G solvation = -3978.986836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70184 -39.95461 -39.56077 -35.90803 -34.64245 -34.21928 -33.79385 -33.27370 -31.34513 -30.65744 -29.26303 -27.61995 -26.44048 -25.30197 -24.16576 -23.05397 -21.70113 -20.89532 -20.40222 -19.93786 -18.56655 -17.68849 -16.90329 -16.77049 -16.54627 -16.06031 -15.81429 -15.67677 -15.22875 -14.93387 -14.80003 -14.51468 -14.35816 -14.06104 -13.88533 -13.58302 -13.30928 -13.15111 -12.77369 -12.30260 -12.20115 -12.16487 -11.81979 -11.75014 -11.48618 -11.18703 -11.04407 -10.85896 -10.76620 -10.66414 -10.41115 -10.22841 -10.07407 -9.90815 -9.67234 -9.48441 -9.24832 -8.60146 -8.07249 -7.38848 -6.21549 -4.26514 1.67971 2.14793 2.65619 2.68478 3.12486 3.27096 3.27746 3.30763 3.35528 3.65762 3.85957 3.89776 4.24426 4.26322 4.30374 4.34492 4.40334 4.41968 4.61719 4.86456 4.95181 5.10821 5.13459 5.15218 5.23779 5.27878 5.30872 5.36611 5.47551 5.53428 5.56950 5.71841 5.83608 6.12989 6.28245 6.56395 6.58994 6.63121 6.89309 7.02734 7.07315 7.12994 7.51630 7.72164 7.84111 7.98508 8.09913 8.56262 8.69196 8.83526 9.38906 10.87031 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.001672 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.363186 B =16744.440226 C =17912.526466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.642 5.642 15 C 0.717 3.283 16 O -0.566 6.566 17 N -0.744 5.744 18 C 0.256 3.744 19 C -0.164 4.164 20 C -0.154 4.154 21 C 0.207 3.793 22 H 0.083 0.917 23 C -0.146 4.146 24 C -0.123 4.123 25 C -0.160 4.160 26 C 0.061 3.939 27 O -0.373 6.373 28 N -0.307 5.307 29 H 0.267 0.733 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.408 0.592 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.250 -22.184 -9.557 32.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.292 5.292 15 C 0.416 3.584 16 O -0.441 6.441 17 N -0.401 5.401 18 C 0.133 3.867 19 C -0.164 4.164 20 C -0.156 4.156 21 C 0.150 3.850 22 H 0.100 0.900 23 C -0.183 4.183 24 C -0.160 4.160 25 C -0.198 4.198 26 C -0.015 4.015 27 O -0.292 6.292 28 N -0.138 5.138 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.242 0.758 35 H 0.236 0.764 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.438 -21.328 -9.400 31.668 hybrid contribution 0.910 0.500 -0.372 1.103 sum 22.349 -20.829 -9.773 32.075 Atomic orbital electron populations 1.69912 1.06026 1.27685 1.49754 1.24943 0.94984 0.99518 0.94625 0.86386 0.79371 0.81805 0.78915 1.19965 1.21068 1.20049 1.21236 0.93980 0.89434 1.52075 0.91352 1.19727 0.85615 0.81291 0.99239 1.49054 1.23227 1.19756 1.18181 1.22556 1.00365 0.90205 0.96751 1.21512 1.02146 1.06362 1.01746 1.18772 0.90643 0.94062 0.94394 1.41332 1.31427 1.24746 1.31647 1.15496 0.79804 0.80277 0.82811 1.90878 1.64365 1.62173 1.26730 1.44947 1.34023 1.27559 1.33576 1.17882 0.88598 0.86016 0.94228 1.22159 0.96528 0.98909 0.98834 1.21567 0.96471 1.00456 0.97090 1.18626 0.88715 0.86547 0.91149 0.89987 1.22178 0.99024 1.00948 0.96187 1.21612 0.97354 0.97354 0.99722 1.22235 1.01637 0.97330 0.98563 1.22646 0.87489 1.01298 0.90096 1.88025 1.44946 1.29359 1.66906 1.77332 1.03772 1.16281 1.16451 0.92306 0.92529 0.93748 0.81510 0.82138 0.75752 0.76446 0.88620 0.88667 0.90197 0.90387 0.90885 0.91485 0.90719 0.90528 0.88283 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.85 9.24 -34.44 -0.32 -15.17 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.26 6.64 6.26 -5.20 -0.03 6.61 16 10 N -0.32 -7.54 3.67 -62.57 -0.23 -7.77 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 13 C 0.28 5.63 8.11 -154.35 -1.25 4.38 16 14 N -0.64 -10.20 5.46 -15.50 -0.08 -10.28 16 15 C 0.72 10.65 8.53 -86.91 -0.74 9.91 16 16 O -0.57 -10.10 13.47 5.29 0.07 -10.02 16 17 N -0.74 -7.97 5.54 -68.12 -0.38 -8.34 16 18 C 0.26 2.40 6.15 -6.83 -0.04 2.36 16 19 C -0.16 -1.53 13.46 -37.12 -0.50 -2.03 16 20 C -0.15 -1.43 12.94 -37.12 -0.48 -1.91 16 21 C 0.21 1.52 3.09 -29.47 -0.09 1.43 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 23 C -0.15 -0.83 5.37 -26.59 -0.14 -0.97 16 24 C -0.12 -0.51 6.03 -26.55 -0.16 -0.67 16 25 C -0.16 -0.68 6.14 -26.59 -0.16 -0.85 16 26 C 0.06 0.32 6.84 37.21 0.25 0.58 16 27 O -0.37 -3.23 10.36 -35.23 -0.37 -3.60 16 28 N -0.31 -7.18 12.42 31.44 0.39 -6.79 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.17 2.76 8.06 -52.49 -0.42 2.33 16 33 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 34 H 0.41 5.30 8.84 -40.82 -0.36 4.94 16 35 H 0.40 3.50 8.46 -40.82 -0.35 3.16 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -34.03 386.89 -9.87 -43.90 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.48 Total: 5.34 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.35 Total: -0.03 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.44 Total: -57.94 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.29 Total: -13.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.03 -9.87 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354638409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.093 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds