Wall clock time and date at job start Tue Mar 31 2020 16:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34963 * 125.97769 * 124.71571 * 10 9 7 12 12 C 1.35249 * 107.85944 * 179.83673 * 11 10 9 13 13 C 1.40398 * 107.86771 * 0.42268 * 12 11 10 14 14 N 1.40199 * 125.97682 * 179.71811 * 13 12 11 15 15 C 1.34776 * 119.99374 * 0.02562 * 14 13 12 16 16 O 1.21587 * 120.00366 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99593 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99748 * 179.97438 * 17 15 14 19 19 C 1.47200 * 109.46819 * 179.97438 * 18 17 15 20 20 C 9.23161 * 153.69211 * 320.77941 * 10 1 2 21 21 C 9.04609 * 137.37036 * 314.26550 * 12 1 2 22 22 H 1.08999 * 109.47570 * 290.78233 * 21 20 19 23 23 C 1.53085 * 109.47911 * 50.81790 * 21 20 19 24 24 C 1.53181 * 109.16248 * 177.59143 * 23 21 20 25 25 C 1.53175 * 109.03656 * 303.01839 * 24 23 21 26 26 C 1.53093 * 109.16235 * 56.97834 * 25 24 23 27 27 O 1.42901 * 109.47761 * 170.75959 * 21 20 19 28 28 N 1.31217 * 108.05323 * 359.73698 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08000 * 126.07088 * 0.02562 * 11 10 9 33 33 H 1.08001 * 126.06566 * 180.13177 * 12 11 10 34 34 H 0.96995 * 120.00350 * 180.02562 * 14 13 12 35 35 H 0.96995 * 120.00132 * 359.97438 * 17 15 14 36 36 H 1.08997 * 109.47469 * 300.00145 * 18 17 15 37 37 H 1.09001 * 109.47152 * 60.00267 * 18 17 15 38 38 H 1.09005 * 109.52673 * 297.49506 * 23 21 20 39 39 H 1.08997 * 109.52539 * 57.68465 * 23 21 20 40 40 H 1.08996 * 109.54261 * 183.15396 * 24 23 21 41 41 H 1.09002 * 109.61365 * 62.93083 * 24 23 21 42 42 H 1.09006 * 109.52352 * 297.07894 * 25 24 23 43 43 H 1.08997 * 109.52477 * 176.88407 * 25 24 23 44 44 H 1.08999 * 109.48482 * 182.41051 * 26 25 24 45 45 H 1.09000 * 109.48402 * 62.37660 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2452 -4.6235 0.8830 12 6 3.2603 -5.4453 0.5317 13 6 3.8689 -4.9120 -0.6157 14 7 4.9655 -5.4594 -1.2963 15 6 5.5297 -6.6016 -0.8564 16 8 5.0875 -7.1574 0.1304 17 7 6.5843 -7.1276 -1.5104 18 6 7.1980 -8.3688 -1.0319 19 6 8.3214 -8.7315 -1.9113 20 6 9.2173 -9.0207 -2.6126 21 6 10.3408 -9.3834 -3.4920 22 1 11.0523 -9.9962 -2.9386 23 6 9.8143 -10.1716 -4.6941 24 6 10.9801 -10.4930 -5.6343 25 6 11.6619 -9.1859 -6.0497 26 6 12.1170 -8.4357 -4.7952 27 8 10.9899 -8.1956 -3.9501 28 7 3.2321 -3.8113 -0.9394 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 1.5838 -4.7547 1.7267 33 1 3.5539 -6.3487 1.0455 34 1 5.3181 -5.0162 -2.0837 35 1 6.9369 -6.6844 -2.2978 36 1 7.5637 -8.2250 -0.0152 37 1 6.4568 -9.1680 -1.0417 38 1 9.3576 -11.0995 -4.3497 39 1 9.0725 -9.5746 -5.2246 40 1 10.6038 -11.0054 -6.5197 41 1 11.6986 -11.1320 -5.1209 42 1 10.9575 -8.5688 -6.6076 43 1 12.5267 -9.4087 -6.6747 44 1 12.5648 -7.4844 -5.0828 45 1 12.8520 -9.0362 -4.2591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354638409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:57 Heat of formation + Delta-G solvation = 34.334519 kcal Electronic energy + Delta-G solvation = -26067.724128 eV Core-core repulsion = 22087.789391 eV Total energy + Delta-G solvation = -3979.934737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21752 -40.91806 -40.42311 -36.90862 -36.08769 -35.27705 -34.66246 -34.45500 -32.78132 -31.64286 -30.90995 -28.82028 -27.93700 -25.86001 -24.96725 -24.57558 -23.04682 -21.95319 -21.38449 -21.25137 -19.65794 -18.70198 -18.56935 -18.13147 -17.37861 -17.23115 -16.94475 -16.55134 -16.37547 -15.95898 -15.87473 -15.63974 -15.54778 -15.03778 -14.86511 -14.58206 -14.47248 -14.19108 -13.78582 -13.76337 -13.64317 -13.61417 -12.94218 -12.72134 -12.64500 -12.27060 -12.23274 -12.08418 -11.83896 -11.73620 -11.62870 -11.43115 -11.39018 -11.23895 -11.06835 -10.70818 -10.47362 -10.17507 -9.71203 -9.04758 -8.31481 -6.45611 0.77708 1.09610 1.38882 1.40809 1.40979 1.49202 1.55217 1.70256 2.21547 2.37840 2.39930 2.67424 2.99970 3.14486 3.35273 3.83070 3.91268 3.92165 3.98984 4.03097 4.19715 4.29893 4.38754 4.50425 4.51722 4.57377 4.68755 4.77855 4.82182 4.87798 4.91809 4.96787 5.03396 5.03968 5.08437 5.11566 5.18169 5.34994 5.37100 5.57786 5.74401 5.86753 5.97724 6.16100 6.31295 6.36743 6.63786 6.71823 7.13588 7.24135 7.35937 8.75651 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.001672 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.363186 B =16744.440226 C =17912.526466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.057 3.943 12 C -0.292 4.292 13 C 0.284 3.716 14 N -0.636 5.636 15 C 0.718 3.282 16 O -0.594 6.594 17 N -0.725 5.725 18 C 0.257 3.743 19 C -0.177 4.177 20 C -0.156 4.156 21 C 0.200 3.800 22 H 0.099 0.901 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.158 4.158 26 C 0.054 3.946 27 O -0.401 6.401 28 N -0.349 5.349 29 H 0.272 0.728 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.202 0.798 33 H 0.170 0.830 34 H 0.421 0.579 35 H 0.413 0.587 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.081 -23.046 -9.835 34.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.091 4.091 12 C -0.323 4.323 13 C 0.028 3.972 14 N -0.288 5.288 15 C 0.418 3.582 16 O -0.472 6.472 17 N -0.382 5.382 18 C 0.135 3.865 19 C -0.178 4.178 20 C -0.158 4.158 21 C 0.143 3.857 22 H 0.117 0.883 23 C -0.180 4.180 24 C -0.158 4.158 25 C -0.196 4.196 26 C -0.022 4.022 27 O -0.321 6.321 28 N -0.180 5.180 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.219 0.781 33 H 0.187 0.813 34 H 0.258 0.742 35 H 0.249 0.751 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.318 -22.221 -9.715 33.644 hybrid contribution 0.446 0.632 -0.318 0.837 sum 23.764 -21.589 -10.033 33.637 Atomic orbital electron populations 1.69990 1.07175 1.28788 1.49891 1.25732 0.95850 1.02675 0.93907 0.85413 0.78289 0.77918 0.78874 1.19924 1.19768 1.19500 1.21392 0.93395 0.91045 1.52880 0.92967 1.19329 0.85673 0.81488 0.98121 1.48815 1.23849 1.20371 1.19642 1.23173 1.00492 0.88779 0.96700 1.21704 1.02181 1.06592 1.01815 1.19069 0.90811 0.93027 0.94252 1.41339 1.30428 1.25121 1.31871 1.15570 0.80269 0.79760 0.82634 1.90850 1.65422 1.62830 1.28096 1.44830 1.32472 1.27634 1.33241 1.17947 0.88794 0.85365 0.94378 1.22121 0.96837 0.99518 0.99346 1.22190 0.96757 0.99900 0.96932 1.18870 0.88571 0.86584 0.91656 0.88327 1.22156 0.99379 1.00723 0.95778 1.21631 0.96987 0.97479 0.99740 1.22224 1.02044 0.97093 0.98193 1.22855 0.86900 1.02131 0.90274 1.87973 1.46112 1.30370 1.67693 1.77251 1.04922 1.18128 1.17694 0.91857 0.92268 0.96077 0.78134 0.81320 0.74229 0.75098 0.88264 0.87929 0.89378 0.91859 0.90135 0.90144 0.91940 0.88760 0.87799 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 13.29 21.45 0.28 -52.19 16 2 C 0.02 1.05 5.46 84.66 0.46 1.51 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -31.32 9.24 25.60 0.24 -31.09 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.31 6.26 85.64 0.54 14.85 16 10 N -0.34 -16.43 3.67 -351.86 -1.29 -17.72 16 11 C 0.06 2.28 11.44 83.52 0.96 3.23 16 12 C -0.29 -11.59 9.61 22.11 0.21 -11.37 16 13 C 0.28 11.55 8.11 133.31 1.08 12.63 16 14 N -0.64 -19.75 5.46 -321.23 -1.75 -21.51 16 15 C 0.72 20.57 8.53 179.05 1.53 22.10 16 16 O -0.59 -20.60 13.47 -3.99 -0.05 -20.65 16 17 N -0.72 -14.58 5.54 -487.68 -2.70 -17.29 16 18 C 0.26 4.51 6.15 84.57 0.52 5.03 16 19 C -0.18 -3.14 13.46 31.13 0.42 -2.72 16 20 C -0.16 -2.74 12.94 31.13 0.40 -2.33 16 21 C 0.20 2.69 3.09 28.82 0.09 2.78 16 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 23 C -0.14 -1.44 5.37 30.68 0.16 -1.27 16 24 C -0.12 -0.76 6.03 30.71 0.19 -0.58 16 25 C -0.16 -1.10 6.14 30.68 0.19 -0.91 16 26 C 0.05 0.50 6.84 72.01 0.49 0.99 16 27 O -0.40 -6.59 10.36 -148.98 -1.54 -8.13 16 28 N -0.35 -16.51 12.42 -54.43 -0.68 -17.18 16 29 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 30 H 0.06 3.02 8.07 -2.38 -0.02 3.00 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.20 6.31 8.06 -2.91 -0.02 6.29 16 33 H 0.17 6.46 5.91 -2.91 -0.02 6.45 16 34 H 0.42 10.62 8.84 -92.71 -0.82 9.80 16 35 H 0.41 6.62 8.46 -92.71 -0.78 5.84 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 43 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -72.91 386.89 1.20 -71.72 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.57 Total: 24.05 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 7.47 Total: 12.85 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -6.14 Total: -125.88 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.60 Total: -28.78 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.91 1.20 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354638409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.051 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds